Spo03285.1 (mRNA)

Overview
NameSpo03285.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
LocationSpoScf_02353 : 8747 .. 14841 (+)
Sequence length544
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTACCTATTTCAAAAGTGTTACCGTAAATTGTTACCTATTTAAAAAGTGTTACCATAATGTGTTACCTATTTTAAAAACTGTTACCATAAAATGTTACCTATGTTAAAGGTGTTACCTTGAGTGTTACATTTTAAAAAAAATGTTACCAAAGTGTTACTTAATAATCTAGTTAACACCTTTATTAAGTAACACTTTGGTAACACTGTCGCCTCATTTTCATTTAAGGATGACCAGAAGTCCCAGATCGAGGTACTAGACATTTCATTTTCATTTAAGGATGACCAGAAGTCCCAGATCGAGGTACTAGACGCCTCATTTTCATTTAAGGATGATTAGAAGTCCCATATCGAGGTTACCAGATGCCTCATTTTCTTTTTAGGATGACCAGAAGTCCCAAATCGAGGTTACCAGACGCCTCACTTAAGGATGACCAGAAGTCCCAAATCGAGGTTACCAGACGCCTCATTTAAGGATGACCAGAAGTCCCAGATCAAGATACTAGACGCCTCATTTTCATTTAAGGATTACCAAAAGTCCCATATCGAGGTTACTAGATATCTCATTTTCATTGAAGGATTACCAGAAGTCACAGATCGAGGTTACCAGACCCCTCATTTTCATTTAAGGATAACTAGAGTCCCAGTTAGAGGTCACCAGATTTCTCATTTCCAGTTTAAAAGACCATCCAAAACTATAACTGTTAGAAATAGTAAAAGATCAGAAATGAAGACATGTAATGAAAAACGACCCTCAACTGACTAAAAAGACCATCCAAAACAGTAACTATTAAATATAGTAACTTCCATAAATAGAAAGCCTCCTAAAATAGACTGGATACATATTTAGTCGCATTTGCATCCCGGTACGGCTTAATATGTGGTTACATCGATAGAAAGATAGAATATCATTGTCCGCATCACAACACACCTATACATGCCACAATGTTCTAGTGCTTGCCTTCAGGCTCTAGAATAACATAGCTCAAACAAAAAGCACTTCTTAAACTCATACTTATTGGGCACAAGACATGTAAATGTTAACCCAATTCACTTAAAAATGCTTACGAGTGCCTAGAATACGTTGGTTAGCCCGTTTAGCAAGTGATACGTCCTTACAAAGTCAAAGTTATAAATTATGATTTGGTTCATGCATATCACATGATTTAATATGCCTTGGAATAAGATTTCCATATACATATCATAAGCCCAAATCCGATTAAAAACGAATAAGTTATAAGGCTTTTACTTGGGCTTCGCCAAAACGGACCGACCTCCACTCTTTTGGCCATAACACGATATTTACGAAGCCCATTAATGCAAAACTGGCGGCATTGGAAAGCTGGATTCAATACCTTTCCAACAAGATATTATTTTCAAGAATCCAAGTTGATATGAAGAAGTTATGAGCTGTTAGAGATCGAGTTTTCTGGAATTCCGCAGATCTGCATGCGCTGGAATTTTCTAGCGGTGGCATAGCATGCGTTGGAAAATTCCAGCGCTCTCAATTTCAATGCCTACTTTTCTAGCGCTACTATATGATTCTGACTAAAACTCAAACTCTTCAAATCCTACCGTATGCGCGCTAGAAATTTCCAGTGCTCCCATGTCGAGCGCTACTTTTTTCTGGCGCTCGAACTCTTCAAATATCTATCTTATTTCGACTACCTACACTATAAATACATCCCTTCTACACCCCGTTTTCAATCATCAATTCAGTCTCACTCCTCTGATATTCTGAATTCTCTCTTCCCCATCTGGTATACTAAAATTCTGTTGACGTCCCGCCCCGTTTTCGTAATAGTTCTCCCGTATTTACTCTTGTTTAGAAGAACTTGTTAGGGGGGAAAATACCCTCTTGGTGACATGTCCAAATGTGCCACCATGGAGCACACGTGGTTGCCAACATAGCAGGACGATACATCACTAGTACATAATTGAGTTTATGTAACACGCGTTGATAACACTTTTTGAAATGCAAAAATTCTAGATTTATAAGTAACACCTTGGTAACATTTTTTTTAGAATGTTACACTTAATGTAACACTTTTAACAAAGTAACATTATAAAGTAACACTTTTAAAATAGGTAACGTTTAAAGGTAACACTAAAAGGTGTTACCTTATTTTTAAGAAGAAATTAAATATTTACAATTAAAAAAAGTAAGCACTATCCCAAAAGTCTCAATTTTCCTTATTTGCCGTCAAAGAAAAAAAAATGAATTTGGGTTTAACTTTGTGAAATCTGTGAAACCGCCAAAGACCAAAAGAAAAAAAAAAGGAAAAAGTTAGAAAAAGTCGTATTACAAAACTTCCTTTTCCCAAATAGAGGCAACTATTCATCCTTAGGTTTAATTTATCAGAAAATCGTCGTCTCGATCCCAAGTTCTATCGAATGCGCACTTTCAAATTCAGGTTTCATCGAATTCGCGATTCCAATTTTCTGGTCTTAATCGTCGTCTCCATCGTGGTGTTGATCGGGATTTATCGAATTCACGGGCTTCCAATTGTAGGTATTTTCTGATTTAATTTGTGGTGGGTTTTCTTAATTTTTTTTTTTTGTTATTTTATCTTGATTTTCAAGATTTCTATGTATTGTTGCATTCTCTATTGTAGTGTTTTATTTGTTTTGATTGGATTCTGAACATTAATTATTTTGTGTTTGATGCAATGTTATTTTTTTTTTTTGATTTTTTGATTAGATATTTCGAATGTCTTCACCTTGAATTGGGTATTTCGAATTTCTTCACCTTGGATTGAGTATTCGAGATGGTATAATTTGTGGGTTCTTCTTCAAAATTACATTTCCTGGTATAATTTGAGGATGAGTATAGTTCGTGGGTTCACTTTTCCCGGTTGCTGACTGTGAGTCTGTGTTTTGGTATGTTCTGATTGATGAATGTGAGTCTGTGTGTTTGGTTTTGCAACTGCTATTTCAAGATTTTTAGGTTGATGTATGTATGATGTTCCTTCTCTATGCTTGGGGTTTTTTTTTCTGTTTCTTAAAAGATATATTTCAAAGATGAAGATATTGTCCGATGACAAGTGATCAATGGACTTGAAACATTGGGGATGTTCCAGGAAGAATAGTAGCGTATTTACCAGTAAGTGTATTTTCAGATGTACTTAGTTTTCTAAGATGCAATATGCATACTTTTTCTTACTGACTTATTGGTGGGTTTGAGGCAAAGACAATGGTAAATATCCCTACTAAAGGCACCCTGCACCTGTGTCTTTATCAACCACCACACCCTTATGTTATTCACGGTTGCCAACATAACAAACATTTTCTGAGAGAACTGTGAAGGGAAGCTCAATGTATTTTCTAAGAGAAACACAAACTGCTTGTATTAAATTATGTTAGCAAATGATTCTACTGATCATAAATTACCCTTCAAATTCCCGCTTAAATGGAAGGATCCCAAGTGGAAATTAAGCGATTTTGATTTCAGATGTCTTGAATTTAAAACTTAATTAATTTTGGTATTTCTAGATTAATGTGAAATTATGAACAAGGTATAGAATTTGTAGAGTTTTTAGTGTGTTGAATTGTGATGGAGAAGTTGTTAGGGTTTAAAATTGCGTGTTTGATAATCTTTTTAATTGATGAAAAGGCAGTTTGTTGGGTGGACAACAGATTGGTGGCGTAGTTTATAAGTAAGATAATGATAAACTTGATGAAAATATTGATGATGATTAACATCGATTTTGTTCGAAACTGCACTGTAATTGTGCTTTTAGCAACATTGAATTGGAGCTGCATAAACAAATACGTACGGAATTGAGATGAGGGATGTAAATGTTGCAAATTAGAGGAGTTTAGAGTTTGAATTGCTTTTTCTTAGGCCAAATGAACTGGGTCAGTGTAGAGTGCGCTCATACAGAGGTATTCACTTCATGTAGTTCTGGTGATATGCTATAGATATTGTTGGATGCATTCTTGTTTGGTGTGTTGTATAATTAGTTGGAATCCCTAAAATTTGGACATAAGGATGTGAAAATGCCTCCTAATTACACTTCTAATCAGCTTCACAAATGTGGTCATATTTGATAAACTATAGTGAGTAATAGTTCACGTTTTTATAGTAGTTTTCTATTATGTGATCTCATCCTTAGTTAAATGCACAAAGGACTTTCATCTGCTTCTTACAGACTTTCTTAAAGAGCATCATCTTGTTCTGACTTGGTGTTTTTACCTTACAATTTTAACCAAATGCATAACTTCCTCTTCGCTTTGTTGTTTCTGGGTACTACGCAGGAATGCGGCTTGTGGTTTGTTCACTGGATTGACTCGTGTTAGGAGATTCCAGCAGGTACCTTTTAACTATTCTGCTACTTTATGGTGTTAGGGTGAAGGAATTGAGTTCCCACTAAGTTGGGTGTTTCACAACTGAATGTTATGTTAAAGGCTGTCAAGTTTGCAAGATATAGGTTAGTATGCATATATAATAGAAATGCGTTCTCATTTCTTCGTGGTGGCTGGAAAAGGCATCCTAACACTTGTGAATGTTGCTTGTATTATAATATGCTTTAATTTCTTATCAATTTGTTTCTCGTGCGTTATTTTAGCACTTGTGTAGGATCCTTTGTATGATTATCAGCTCATGAATACATGAGCTGCTTTGAGCTCCGGTTGACTTCTGTTAATTTTCTGACTCAAAAGAACTATGCTGCTAGTTTGTTTATTTCAGTATGTGATTTATGTCAGTCATTGGTAGTCAAAATGACTGAAGATACGTTGTTTCTTATGTGAATGGCTGACTGATTTTGATGTTGACGTAAATAGCAGCTAGAGACCGGAGATAAAAGATATTTTGGTCGAAGGTTCTTTGGAAGATTGGGTAGTTTCAAATTGGGCTGACATATAGGTGTAAGAAACTAAGCATGCTTATGACATTGTCTTCTTACCTAGTTTGATGTTTACATGTTCTATAATAATAGATCGATGATTCATGAAGCAGAACACTGAAGGTTCGCTTTTACTTCTGAATCTGCTGCTCCTAGCTGTCTGAATGGTTATCAAGATGCGAAAATATCCTTTAGAGACAAAACCTTAAGGACAGAAATGGGTAACCAATGAAAGAAGTTTCAAGATGTTAAGGCATATGAATAATCTGTATATTTTCTTGAGTTGTCTTTGTTAATCTAACCTTATTGTTTTTGTTGTTATATATTCACAAATTTGATATAACCATAGACTACAGGTGACTAGACGGGACGATTTGTTGCCTTCTTTTCAGGGTTTATGCTCAACACTTACTCTAAGTTCCTGGACTAGATAAACAAACATGAAATAAACTACCTTTGTGACATTGATGACATTTGATAAATGTTGCTTATTTTAGATTTTGCTTGATATGTTGGTTTTTAATTTGTACCCAAGTATTGGTTGAAATTCATAAGAAGACCTATTGTTTACAGGAGCTTCTCAAATACCCAAGTGTTGGTTGAAAGTCATAAGAAGATCTATTTGTTCATTGTAGAGTTTTTTTACAAAATACTTTTGAAGTTGCAGGGTCTATTTTCTGGTTGTCGCTAATGTCGTGTTTATATTTTATACCATAATCTTCTTTGGTTTTCTCTACTTATTTTTTTTGTTTTATAGAAATATCTTTTATTCGACATGTTTTTTAATTAATTTTTTGTAGGAGTAAGGTCAAGGTGTCAGAGAATAGAAGACTTAACGCAAAAAAGGATATAAGATAATTACTCTTAAGAATTATATTTTTTTTGCTTTTCTTGATTATGGATATTAGATCTTACTAATTTTATACTTTTTATAGGATCAAGATGACGGATCAGATTTGATAGGAAATGAAGATTGAGTTGACATTGAGAATCATGCGCATATAAGGGAAAACAGATGAAGATGGAAACATAGAAGACATTGAGTTTTGGATTTACATTTTATTTTTATATACAACCAGTTGGTTTTATTTTGAACGAATGTAATTTTCATAGACCGTACATCAAATACATTAGAATGTTAGATTTACCATCAAAATGACATTGGCATATTCGTGTAACTAACAATTTCGGATTCCAATTATTATCACTATTCTTCTTTTATGGTTAATAAATTTTTTTCTTATAATA

mRNA sequence

ATGTTACCTATTTCAAAAGTGTTACCAAAATCGTCGTCTCGATCCCAAGTTCTATCGAATGCGCACTTTCAAATTCAGGTTTCATCGAATTCGCGATTCCAATTTTCTGGTCTTAATCGTCGTCTCCATCGTGGTGTTGATCGGGATTTATCGAATTCACGGGCTTCCAATTGTAGGAATGCGGCTTGTGGTTTGTTCACTGGATTGACTCGTGTTAGGAGATTCCAGCAGGATCAAGATGACGGATCAGATTTGATAGGAAATGAAGATTGAGTTGACATTGAGAATCATGCGCATATAAGGGAAAACAGATGAAGATGGAAACATAGAAGACATTGAGTTTTGGATTTACATTTTATTTTTATATACAACCAGTTGGTTTTATTTTGAACGAATGTAATTTTCATAGACCGTACATCAAATACATTAGAATGTTAGATTTACCATCAAAATGACATTGGCATATTCGTGTAACTAACAATTTCGGATTCCAATTATTATCACTATTCTTCTTTTATGGTTAATAAATTTTTTTCTTATAATA

Coding sequence (CDS)

ATGTTACCTATTTCAAAAGTGTTACCAAAATCGTCGTCTCGATCCCAAGTTCTATCGAATGCGCACTTTCAAATTCAGGTTTCATCGAATTCGCGATTCCAATTTTCTGGTCTTAATCGTCGTCTCCATCGTGGTGTTGATCGGGATTTATCGAATTCACGGGCTTCCAATTGTAGGAATGCGGCTTGTGGTTTGTTCACTGGATTGACTCGTGTTAGGAGATTCCAGCAGGATCAAGATGACGGATCAGATTTGATAGGAAATGAAGATTGA

Protein sequence

MLPISKVLPKSSSRSQVLSNAHFQIQVSSNSRFQFSGLNRRLHRGVDRDLSNSRASNCRNAACGLFTGLTRVRRFQQDQDDGSDLIGNED
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo03285Spo03285gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo03285.1Spo03285.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo03285.1.exon.1Spo03285.1.exon.1exon
Spo03285.1.exon.2Spo03285.1.exon.2exon
Spo03285.1.exon.3Spo03285.1.exon.3exon
Spo03285.1.exon.4Spo03285.1.exon.4exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo03285.1.CDS.1Spo03285.1.CDS.1CDS
Spo03285.1.CDS.2Spo03285.1.CDS.2CDS
Spo03285.1.CDS.3Spo03285.1.CDS.3CDS
Spo03285.1.CDS.4Spo03285.1.CDS.4CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo03285.1.utr3p.1Spo03285.1.utr3p.1three_prime_UTR


Homology
[Close]
BLAST of Spo03285.1 vs. NCBI nr
Match: gi|902212585|gb|KNA17021.1| (hypothetical protein SOVF_083470 isoform A, partial [Spinacia oleracea])

HSP 1 Score: 134.0 bits (336), Expect = 1.300e-28
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 1 

		  

Query: 10 KSSSRSQVLSNAHFQIQVSSNSRFQFSGLNRRLHRGVDRDLSNSRASNCRNAACGLFTGL 69
          KSSSRSQVLSNAHFQIQVSSNSRFQFSGLNRRLHRGVDRDLSNSRASNCRNAACGLFTGL
Sbjct: 1  KSSSRSQVLSNAHFQIQVSSNSRFQFSGLNRRLHRGVDRDLSNSRASNCRNAACGLFTGL 60

Query: 70 TRVRRFQQ 78
          TRVRRFQQ
Sbjct: 61 TRVRRFQQ 68
[Close]
BLAST of Spo03285.1 vs. NCBI nr
Match: gi|902203089|gb|KNA14469.1| (hypothetical protein SOVF_107270 isoform A [Spinacia oleracea])

HSP 1 Score: 92.4 bits (228), Expect = 4.200e-16
Identity = 48/54 (88.89%), Postives = 49/54 (90.74%), Query Frame = 1 

		  

Query: 10  KSSSRSQVLSNAHFQIQVSSNSRFQFSGLNRRLHRGVDRDLSNSRASNCRNAAC 64
           KS SRSQV SNAHFQIQVSSNSRFQFSGLNRRLHRGVDRDLSNS+ASNCR   C
Sbjct: 251 KSPSRSQVPSNAHFQIQVSSNSRFQFSGLNRRLHRGVDRDLSNSQASNCRYFEC 304
[Close]
BLAST of Spo03285.1 vs. NCBI nr
Match: gi|902203090|gb|KNA14470.1| (hypothetical protein SOVF_107270 isoform B [Spinacia oleracea])

HSP 1 Score: 85.9 bits (211), Expect = 4.000e-14
Identity = 45/48 (93.75%), Postives = 46/48 (95.83%), Query Frame = 1 

		  

Query: 10  KSSSRSQVLSNAHFQIQVSSNSRFQFSGLNRRLHRGVDRDLSNSRASN 58
           KS SRSQV SNAHFQIQVSSNSRFQFSGLNRRLHRGVDRDLSNS+ASN
Sbjct: 251 KSPSRSQVPSNAHFQIQVSSNSRFQFSGLNRRLHRGVDRDLSNSQASN 298
[Close]
BLAST of Spo03285.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RC02_SPIOL (Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_083470 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 8.800e-29
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 1 

		  

Query: 10 KSSSRSQVLSNAHFQIQVSSNSRFQFSGLNRRLHRGVDRDLSNSRASNCRNAACGLFTGL 69
          KSSSRSQVLSNAHFQIQVSSNSRFQFSGLNRRLHRGVDRDLSNSRASNCRNAACGLFTGL
Sbjct: 1  KSSSRSQVLSNAHFQIQVSSNSRFQFSGLNRRLHRGVDRDLSNSRASNCRNAACGLFTGL 60

Query: 70 TRVRRFQQ 78
          TRVRRFQQ
Sbjct: 61 TRVRRFQQ 68
[Close]
BLAST of Spo03285.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R6A0_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_107270 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 3.000e-16
Identity = 48/54 (88.89%), Postives = 49/54 (90.74%), Query Frame = 1 

		  

Query: 10  KSSSRSQVLSNAHFQIQVSSNSRFQFSGLNRRLHRGVDRDLSNSRASNCRNAAC 64
           KS SRSQV SNAHFQIQVSSNSRFQFSGLNRRLHRGVDRDLSNS+ASNCR   C
Sbjct: 251 KSPSRSQVPSNAHFQIQVSSNSRFQFSGLNRRLHRGVDRDLSNSQASNCRYFEC 304
[Close]
BLAST of Spo03285.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R4N8_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_107270 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 2.800e-14
Identity = 45/48 (93.75%), Postives = 46/48 (95.83%), Query Frame = 1 

		  

Query: 10  KSSSRSQVLSNAHFQIQVSSNSRFQFSGLNRRLHRGVDRDLSNSRASN 58
           KS SRSQV SNAHFQIQVSSNSRFQFSGLNRRLHRGVDRDLSNS+ASN
Sbjct: 251 KSPSRSQVPSNAHFQIQVSSNSRFQFSGLNRRLHRGVDRDLSNSQASN 298
The following BLAST results are available for this feature:
BLAST of Spo03285.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 3
Match NameE-valueIdentityDescription
gi|902212585|gb|KNA17021.1|1.3e-28100.hypothetical protein SOVF_0834... [more]
gi|902203089|gb|KNA14469.1|4.2e-1688.8hypothetical protein SOVF_1072... [more]
gi|902203090|gb|KNA14470.1|4.0e-1493.7hypothetical protein SOVF_1072... [more]
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BLAST of Spo03285.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 3
Match NameE-valueIdentityDescription
A0A0K9RC02_SPIOL8.8e-29100.Uncharacterized protein (Fragm... [more]
A0A0K9R6A0_SPIOL3.0e-1688.8Uncharacterized protein OS=Spi... [more]
A0A0K9R4N8_SPIOL2.8e-1493.7Uncharacterized protein OS=Spi... [more]
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BLAST of Spo03285.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo03285.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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