Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGCATCGCGTCGCGCAGCACGTAGCTCCCGAGGCCTCGAAGGACCCCAAGTTGTCTCCCTTAACCGGGACGGCAAAACCGTTGCGACCCCAGGTCAGGCGGGGCTACCCGCTGAGTTTAAGCATATCAATAAGCGGAGGAGAAGAAACTTACAAGGATTCCCCTAGTAACGGCGAGCGAACCGGGAACAGCCCAGCTTTAGAATCGGGCGGCTTCGCCGTCCGAATTGTAGTCTGGAGAAGCGTCCTCTGCGGCGGACCGGGCCCAAGTCCCCTGGAAAGGGGCGCCAGAGAGGGTGAGAGCCCCGTCGTGCCCGGACCCTGTCGCACCACGAGGCGCTGTCGCCGAGTCGGGTTGTTTGGGAATGCAGCCCTAAGTGGGCGGTAAATTCCGTCCAAGGCTAAATACTGGCGAGAGACCGATAGCGAACAAGTACCGCGAGGGAAAGATGAAAAGGACTTTGAAAAGAGAGTCAAAGAGTGCTTGAAATTGTCGGGAGGGAAGCGGATGGGGGCCGGCGATGCGCCCCGGTCGGATGTGGAACGGCCAAAAGCCGATCCGCCGATCGGCTCGGGGCGCGGACCGACGTGGATTGGGAGGGCGGCAGAACCCCGGCTTGCCGGGAGCGTCGTCCTCTCGATTGTGGTAGGCAGCGCGCGCCGTCACGGCGTGCTTCGGCACCTGCGCGCTCTAGGCGTCGGCCTGCGGGCCCCCCATTCGGCCCGTCTTGAAACACGGACCAAGNGGCCTGCGGGCCCCCCATTCGGCCCGTCTTGAAACACGGACCAAGGAGTCTGACATGTGTGCATACGCCTCTATTTATATTACAAAAGATATCCTACACTTTGTAGGATTCCTAAGTCCTATAGACTTCAATCTCATATCATATAACATAACCCTATCTCATATGATATTCTATCCTCTGGGATAACTACGTTATCCTTAACATGTTTGAAGGCTGAGTTTGTTTGTTGGTGGCTACTGCTGTGTATGTGTTCAGGCTGCTGCAGTCATTCTGCAGGTTCTGGTCTGTTCAGGTTCTCTGCAAGCTGCTCCCTTTCTGCTTGCTGCTGCTGTGCAGAGTTGTGGTGTGTGTATCACGTGTTTGACCTGGTTCTGGTTTTGCTGCTGTTGTGCAGTTTGTGTGTGTTTAGTTAAGGCTGGTCTTGATCAAATAGTAAGTGTAAAGAATTGATGATTATTATAGACGCCCGATACAAAATTTGGAGTGATGTCAAACTTTGGCAACATAAACTGAATAGGAGAGTAGGAGACAAATAAACAATGTTCTTTTAGGAAAAGGTTTTAATTTTTAATAATTTGATTTTAACTTATTTTTCCCATCCAATCTGATTTAGGATATACTACCTGTGCTTTCAAAAGATCTTTACACTTACTATTTGTACGGACTCCGGTGTAATGTTTGACCGTTAATATATCTAATTTTGTACGATAAAAATTTGATATTTATAAAATACATTTTGAGACGAACCTAACAAGATATTTCATTATAGTTTTTGATAGATATAATAGTGAGAATTTACGGTCAAAGTTTTCATATTTTGGACACATTTTTCAGAGCGAAAAGAACTTTCAGAAACCGAGGTAATAGTATTCTTTGTACCTTATTTTATTATGGCAAATTTGTCAAAAAGAACCTTTTAAAACTCAAATTTTGCGAGAAAGCTAGGACCTTATATAATTTTTTTTGTGAAATCACACCTTAATGTAAATTTTTTGCGAGAAAGGACCTTAGGGAAGTTTCCGGCATTGACTGAGCTTTTTCGGCCATTGACTTGCACGTGAGCAGCACGTGTGGCTTAAGTTGGCTAAAGACAGTGATTTTTCCGAGTCTTGAATTTCCATACTTGATTTTATTTTGAATTTTTTTCAACTTTAGGTTTTAAAGCTTAGAATTTTGGAGGAAAATTGGGTGTGGTTAGCAAAATAAAGCCACACGTGCTTCTCATGTACAAGTCAATGGTCGTAAAAGCTCAGTCAATGCCGGAAACTTACTTTTGGTTGTCTTTTGCAAAAAAAATTACATTAAGGTGTTATTTCACAACAAAATAATTATATAAGGTCCTTTTTCGCAAAAAAAATTTACATTAAGGTGTGATTTCACAAAAAAAAATTATATAAGGTACTTTCTCGCAAAATTTGGGTTATAAAAGGTCATTTTTAGCAAATTTGTCTTTTATTATTTACGTCTATTGGATAAAGCTACTCCCTCCGGTGCAAGTATTAAGGAACGTCCCGAAAAGAAAAGCGCTACAATTATTAACGGACAGAGGGAGTACAAAACTTTAAGTGTTTGAAATCTAATTAAGGGCAAATTATATGTACCAATGAGTCTTGACCTATTGGTTAAGAAAGAGGGCAAATAATCTCTCTTATATAAGTAAAGAGTTGAGGTTATCAAATCCACTTTAGGTGTCCCCCTACGACTAGACTAAATTACTCTCTACATAAAATAATTAAATTCAATTACGAAAGGTTATTATTTATTGATTTAAACCGTTGCTTAGTAATTGATTGAAAAGGCATATTAATTATCAACACTGATGTAATTGATGTAAATGTTGTAGTATTAGTCAACATCCATATTTAGTTAGCGTAATTGACGTAATTGATTGGCATAACAATTGCCATATCATTCTCATATTAATTCACTTTTGGTGTCCCCTAGATTAATTCCGGACATTATATATTCTACTTAACTTAGCTTGTACATGGAATTAAAATTTATGTGCATCATTTTTCTCGCAGCGTTGTCGCAGTCTATATGCGGATGTTCTTTTTTGGTGTAGAGAGAGCTATAAAGGGCAAGGCAACAACTGATATAGACGGGATTAGATCCCAGGTCTCGGGTACCTCAAAACTTTATCAACTAAGCTAG ATGCATCGCGTCGCGCAGCACGTAGCTCCCGAGGCCTCGAAGGACCCCAAGTTGTCTCCCTTAACCGGGACGGCAAAACCGTTGCGACCCCAGGTCAGGCGGGGCTACCCGCTGAGTTTAAGCATATCAATAAGCGGAGGAGAAGAAACTTACAAGGATTCCCCTAGTAACGGCGAGCGAACCGGGAACAGCCCAGCTTTAGAATCGGGCGGCTTCGCCGTCCGAATTGTAGTCTGGAGAAGCGTCCTCTGCGGCGGACCGGGCCCAAGTCCCCTGGAAAGGGGCGCCAGAGAGGGTGAGAGCCCCGTCGTGCCCGGACCCTGTCGCACCACGAGGCGCTGTCGCCGAGTCGGGTTGTTTGGGAATGCAGCCCTAAGTGGGCGCGAACAAGTACCGCGAGGGAAAGATGAAAAGGACTTTGAAAAGAGAGTCAAAGAGTGCTTGAAATTGTCGGGAGGGAAGCGGATGGGGGCCGGCGATGCGCCCCGGTCGGATGTGGAACGGCCAAAAGCCGATCCGCCGATCGGCTCGGGGCGCGGACCGACGTGGATTGGGAGGGCGGCAGAACCCCGGCTTGCCGGGAGCGTCGTCCTCTCGATTGTGGTAGGCAGCGCGCGCCGTCACGGCGTGCTTCGGCACCTGCGCGCTCTAGGCGTCGGCCTGCGGGCCCCCCATTCGGCCCGTTCTCTGCAAGCTGCTCCCTTTCTGCTTGCTGCTGCTGTGCAGAGTTGTGAGAGAGCTATAAAGGGCAAGGCAACAACTGATATAGACGGGATTAGATCCCAGGTCTCGGGTACCTCAAAACTTTATCAACTAAGCTAG ATGCATCGCGTCGCGCAGCACGTAGCTCCCGAGGCCTCGAAGGACCCCAAGTTGTCTCCCTTAACCGGGACGGCAAAACCGTTGCGACCCCAGGTCAGGCGGGGCTACCCGCTGAGTTTAAGCATATCAATAAGCGGAGGAGAAGAAACTTACAAGGATTCCCCTAGTAACGGCGAGCGAACCGGGAACAGCCCAGCTTTAGAATCGGGCGGCTTCGCCGTCCGAATTGTAGTCTGGAGAAGCGTCCTCTGCGGCGGACCGGGCCCAAGTCCCCTGGAAAGGGGCGCCAGAGAGGGTGAGAGCCCCGTCGTGCCCGGACCCTGTCGCACCACGAGGCGCTGTCGCCGAGTCGGGTTGTTTGGGAATGCAGCCCTAAGTGGGCGCGAACAAGTACCGCGAGGGAAAGATGAAAAGGACTTTGAAAAGAGAGTCAAAGAGTGCTTGAAATTGTCGGGAGGGAAGCGGATGGGGGCCGGCGATGCGCCCCGGTCGGATGTGGAACGGCCAAAAGCCGATCCGCCGATCGGCTCGGGGCGCGGACCGACGTGGATTGGGAGGGCGGCAGAACCCCGGCTTGCCGGGAGCGTCGTCCTCTCGATTGTGGTAGGCAGCGCGCGCCGTCACGGCGTGCTTCGGCACCTGCGCGCTCTAGGCGTCGGCCTGCGGGCCCCCCATTCGGCCCGTTCTCTGCAAGCTGCTCCCTTTCTGCTTGCTGCTGCTGTGCAGAGTTGTGAGAGAGCTATAAAGGGCAAGGCAACAACTGATATAGACGGGATTAGATCCCAGGTCTCGGGTACCTCAAAACTTTATCAACTAAGCTAG MHRVAQHVAPEASKDPKLSPLTGTAKPLRPQVRRGYPLSLSISISGGEETYKDSPSNGERTGNSPALESGGFAVRIVVWRSVLCGGPGPSPLERGAREGESPVVPGPCRTTRRCRRVGLFGNAALSGREQVPRGKDEKDFEKRVKECLKLSGGKRMGAGDAPRSDVERPKADPPIGSGRGPTWIGRAAEPRLAGSVVLSIVVGSARRHGVLRHLRALGVGLRAPHSARSLQAAPFLLAAAVQSCERAIKGKATTDIDGIRSQVSGTSKLYQLS Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Homology
BLAST of Spo03315.1 vs. NCBI nr
Match: gi|870767542|gb|KMS65341.1| (hypothetical protein BVRB_036970, partial [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 140.6 bits (353), Expect = 4.100e-30 Identity = 79/121 (65.29%), Postives = 87/121 (71.90%), Query Frame = 1
BLAST of Spo03315.1 vs. NCBI nr
Match: gi|902148572|gb|KNA05259.1| (hypothetical protein SOVF_192120, partial [Spinacia oleracea]) HSP 1 Score: 114.0 bits (284), Expect = 4.100e-22 Identity = 52/57 (91.23%), Postives = 53/57 (92.98%), Query Frame = 1
BLAST of Spo03315.1 vs. NCBI nr
Match: gi|870866061|gb|KMT17080.1| (hypothetical protein BVRB_2g041350 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 110.9 bits (276), Expect = 3.500e-21 Identity = 53/65 (81.54%), Postives = 57/65 (87.69%), Query Frame = 1
BLAST of Spo03315.1 vs. NCBI nr
Match: gi|658035496|ref|XP_008353279.1| (PREDICTED: zinc finger MYM-type protein 1-like [Malus domestica]) HSP 1 Score: 109.4 bits (272), Expect = 1.000e-20 Identity = 58/74 (78.38%), Postives = 60/74 (81.08%), Query Frame = 1
BLAST of Spo03315.1 vs. NCBI nr
Match: gi|902159193|gb|KNA06308.1| (hypothetical protein SOVF_182180, partial [Spinacia oleracea]) HSP 1 Score: 95.9 bits (237), Expect = 1.200e-16 Identity = 53/80 (66.25%), Postives = 55/80 (68.75%), Query Frame = 1
BLAST of Spo03315.1 vs. UniProtKB/TrEMBL
Match: M1D9E9_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400034963 PE=4 SV=1) HSP 1 Score: 181.0 bits (458), Expect = 1.900e-42 Identity = 90/100 (90.00%), Postives = 91/100 (91.00%), Query Frame = 1
BLAST of Spo03315.1 vs. UniProtKB/TrEMBL
Match: M1DS60_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400043107 PE=4 SV=1) HSP 1 Score: 169.9 bits (429), Expect = 4.400e-39 Identity = 92/142 (64.79%), Postives = 102/142 (71.83%), Query Frame = 1
BLAST of Spo03315.1 vs. UniProtKB/TrEMBL
Match: A0A0J7YP30_BETVU (Uncharacterized protein (Fragment) OS=Beta vulgaris subsp. vulgaris GN=BVRB_036970 PE=4 SV=1) HSP 1 Score: 140.6 bits (353), Expect = 2.900e-30 Identity = 79/121 (65.29%), Postives = 87/121 (71.90%), Query Frame = 1
BLAST of Spo03315.1 vs. UniProtKB/TrEMBL
Match: M0ZZR9_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400004552 PE=4 SV=1) HSP 1 Score: 121.3 bits (303), Expect = 1.800e-24 Identity = 60/83 (72.29%), Postives = 65/83 (78.31%), Query Frame = 1
BLAST of Spo03315.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QDA8_SPIOL (Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_192120 PE=4 SV=1) HSP 1 Score: 114.0 bits (284), Expect = 2.900e-22 Identity = 52/57 (91.23%), Postives = 53/57 (92.98%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo03315.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo03315.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo03315.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 0
BLAST of Spo03315.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 0
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
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