Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.GTCGGGTTGGGTTGGGAAAATCTCAACCCGTTTATAAATGGGTCGACCTGATTTCGACCCAACCTAACCCATTGCCAGCCTCTAGGATTGATGGTGTAAGCGGATCGTGGGTAACCCGACTCATTGGCCATCGACCGATAAAGACGCTAGAATCCACAATTGGCAACCCATGTGTTTGGTGAGAAATGATTTTCTAATCACACAACAAATTACAACTTATTTATAAACGGACGACCAAATTAAAATACTCAATATTATTAACACACGGATAAAATTCCCGAAAATCCAAAACTTCATTCATACCCACTGAACTCCTGTAACCTTACAACTCACGTGTCTCTCTCTCCTCTTAGCTTCAATCAGTATCAAAAATGGCGATTTCTCCTCATCTCAGCCGCATCATCACCTTCACCGAACTCCGGTTGCCGGAAACTCAATTCCGCCCAAACTTCCACAGGAAGCCTCACCTCTCCGTCCGATGTGTCGCCGGTGAGTCTCCGACGTCTTCATCATCCTCCGCCGTTGATTCCAAATTTGATGCTAAGAAGTTCCATCACAACTTGACGAGGAGTGAGAATTATAATCGCAAGGGTTTTGGACACAAAGAAGAGACTCTCCAGCTTATGAATAGCGAGTATACTAGTTACGTTTCTGTAATTTCTACTCTCTTATTTGTTCAGTTGGTCGAAATTTCTGTGATTTTTCTTTTTTTTTTACAAATATTTGATTGACCGTTGATTTTATTTTGGGAGGCGATGAAATTACTAGTTAGTTTCCTAATTTTCAGATGATTGGACTGTTGATTGAACTTATCTATATCATCAGTTGTTTATAATTTCGAAATAATGTTTTGATGACTGATTTTGATTGTTTTTACCTAGTTTTGTTGAACTTTTAGGCGAGGCCATGTCAATTATTGGCTATAATCGAATTTTGAGAAACTTGGAGCAATTAATTTACTCTGTATGATACACTTGATGTTTTAATTTAGAATTGAGCTCATTTCAATCACTGATTTATAATTTGTGAAATTAGTGATTATTAAGTTCATTTCTGTGTGACTTGGGTAGAAAGGTAGATATGGTGGATTTTTCATGAGTTTTTATGAAAATGAAAAAATTCATTTAGTTTGATGCATGAATGACTGACATTTTTTTTCTTCTTATTATTATTGCATCAGGTGATATAGTAGAGACTTTGAAGAAGAATGGATACGAGTATACTTGGGGCAATGTCACGGTGAAGCTTGCAGAATCCTTTGGATTTTGCTGGGGTGTGGAACGAGCCGTTCAGATTGCATATGAAGCGAGGAAACAGTTTCCCAGTGAGAGAATCTGGATCACTAACGAAATAATTCACAACCCAACTGTTAATAAGGTTTGCAAATTTCTTTCTGATTGATTTCTGTAGGATAATACAGTGGTAGTAGACTAGTAGCATCTTAAGATTTTGGAATGGAATTTGTGATTGATTAGGATCAGGTAGAATATCACTCCACCTCGAAAGTTATCATATGCCGAAAACCTGAGAACCGGGTAAAGTGAGAAATGATGTTGAATTTGCAAGCTGTTATCAAGATGGAGAAGCTTTTACAGAAAGCCAAACCTGTTTTCATGTCAAACCACGAATTCGTTTCTATTACCTTTGGGGTTAATTGATGTGGCTTTAAGTGTAGTTGCTTGACTTATATTTTTTCAGATCAGTTGATGGGATTAAGGTGTGGAGTTGGAAGATTAACAGTTAGTACCTAGAGGGAGTCTGTTAGTTCTTTTTAAATGTTGAGAGCTGTTCATATAATAAGTTAACTGGTACTTCGTATATCTCTTTTACGTGGGTTGGGCATCAGCTAAGCTTGTTAAATTTTGAGGTGTGAAACTTGCAACTTGAGGTTCAAAACCCATCTGCAAAAATTGACCTTGTGGCTCCCTATAACCTGCTTCCCTCAATCCCCAGTCCCCCACCCAACCATCCTCCCACCAAAAAAGAGAGTACTGCTTTTCTTTTCATTTATTTTGTTCTCTTTGTTAGACAATTAAAAGTGCCTCAAAATGAAAATGAATTACTACGGAGTACATTAAATAATTAGTCAGTCAGTTTTCTTCTATTGATCGCACGGCCTGCATTAAATAATTGACCACACCGCCTACATTAAATGATAGGATAGTAGCCCTTTTCTGTGCATGCTACGTTTACCTGAACAGAAAGCAGTCATCAGTAATTTGAAGTAACAGAAGTCTTTTGTTGCAGCGACTGGAAGAAATGGAAGTGCAGAATATCCCTCTTGAGGAAGGAAAGAAGCAATTTGAGGTTGTTGACAAAGGTGATGTTGTGATTTTACCAGCTTTTGGAGCTGCTGTAGATGAAATGTTGACTTTGAGCGAGAAAAATGTACAAATTGTAGATACAACTTGCCCTTGGGTGAGCAAGGTATGAATTCATAACCGATCTGCTGTTCCACTTGCTTCCCTCAGTGAGTATATGTTTGATAACCTTCACTGTCTCTGATTCTTTTCTATGTTCACTAATATTTTTTTTAGGTGTGGAACGTAGTGGAGAAGCACAAGAAAGGAGATTATACTTCAATTATTCATGGGAAATACGCTCATGAAGAGACCGTTGCTACTTCATCTTTTGCTGGGACATACATAATTGTGAAGAATATGAAAGAGGTAGATTACATGTTAATTTATTCCATATACTTCAATTTTCCATCACAGTAATACTGTACATTGCTTCATATCTTCTATGCTTGTGCTTCATCCAGGCAACTTATGTGTGTGATTATATTCTTGGTGGGCAACTTGATGGATCTAGTTCAACCAGAGAGGCGTTTCTAGAGGTAAATCTTCTTCTACTGAACATGATCGTAAATATCTTGGGCTTAAGGGACATCCTTCTCGTCTCTTTTACTCCCTTACTAATGGTATTTTCTTGCAGAAATTCAAATATGCTGTTTCCGATGGGTTTGATCCAGACAGAGACCTAGTAAAAACTGGAATAGCAAACCAAACTACAATGCTTAAGGGAGAAACAGAAGATATCGGTTTGTTGCACTTAGCAGAATAATTTTACTTGTTTTCTTGCAAGACTAGCAATTTAATGACTTCCTTGTCTCCAACTTTGCAGGAAAGCTTGTTGAGAGAACCATGATGCGGAAGTATGGGGTTGAGAACTTAAACAACCACTTCTTGAGTTTCAACACAATTTGCGATGCTACTCAAGTACTTCCACATCTCTTGCAACCTCTGTTCTTTTTTGCTTAAATGCTAGATAAGTAATTTCAGTAGCAATTTTTTTACTATTCTGCTTAATTTCTACCAGCTACCCAAATTAATGTTAGCCCATGGAAATCCTGCTCGATGCAGGGTTCATAGGCTGTAAACCCCAGATCGACGAAGTAATTTAGTACTTGGCTAAAAGTTGGTGATGGAAACAGAGGCCTTTTTGTAATTAGTCAAGTTCCTTCTGTTACAACTTTAGCATCCAAACAAGCATCTTTTCAGCCCCATTATTATAATATAGTGTCACCACGCAGTACATTGCCGTGTGCTACCTAAGTTGATGAAACATTCTTATGAAACTCTGGTGTGCTTACTTACTCTTTCTTCTCCAGGAGCGACAAGATGCAATGTATAAGCTGGTGGAAGAAAAAGTTGATCTTATGCTGGTGGTCGGAGGCTGGAACTCCAGCAACACCTCTCATTTGCAAGAAATAGTCGAGGAGCGTGGGATCCCTTCATATTGGATTGACAGTGAAGAAAGAATAGGCCCCGGAAACAAAATAAGCTACAAGTTGAACGTAAGTATAGAATACAGAAATCTTACTGCTATGTTATATTATCTCAATCTCAATGTTGTTACTCACCATATCATCTGTTCTCAGCATGGGGAGCTAGTTGAGAAAGAAAATTGGCTACCAGAAGGTCCAATCACTATCGGAATAACTTCTGGTGCTTCTACCCCAGATAAGGTATGCACCTAAAACGTTATTTTGGTTTGTGACAGCCCAAACCTTTACTCTGATCTCTTTGCTTTAATACTGCTAGCCTGCTAGCTAGAAACTCATGTGCAATGATTATGATATTATGCAGCACGTATAAGTGTACCACTGTTAACCTGCTAATAGAGATAAACGGGCTTCTGCGCCTCGTTGTTTAATGTTCAGTCCTTCAGGGTCATGTTAATGACAGATTAAAGTTGTTTTTATACCTAATTTTCAGTAATTCAGTGATTGACCCTAGTTATTTCTTTTTCTAGGTTGTGGAAGATGTCTTGGTCAAAGTTTTTGA GTCGGGTTGGGTTGGGAAAATCTCAACCCGTTTATAAATGGGTCGACCTGATTTCGACCCAACCTAACCCATTGCCAGCCTCTAGGATTGATGGTGTAAGCGGATCGTGGGTAACCCGACTCATTGGCCATCGACCGATAAAGACGCTAGAATCCACAATTGGCAACCCATGTGTTTGGTGAGAAATGATTTTCTAATCACACAACAAATTACAACTTATTTATAAACGGACGACCAAATTAAAATACTCAATATTATTAACACACGGATAAAATTCCCGAAAATCCAAAACTTCATTCATACCCACTGAACTCCTGTAACCTTACAACTCACGTGTCTCTCTCTCCTCTTAGCTTCAATCAGTATCAAAAATGGCGATTTCTCCTCATCTCAGCCGCATCATCACCTTCACCGAACTCCGGTTGCCGGAAACTCAATTCCGCCCAAACTTCCACAGGAAGCCTCACCTCTCCGTCCGATGTGTCGCCGGTGAGTCTCCGACGTCTTCATCATCCTCCGCCGTTGATTCCAAATTTGATGCTAAGAAGTTCCATCACAACTTGACGAGGAGTGAGAATTATAATCGCAAGGGTTTTGGACACAAAGAAGAGACTCTCCAGCTTATGAATAGCGAGTATACTAGTGATATAGTAGAGACTTTGAAGAAGAATGGATACGAGTATACTTGGGGCAATGTCACGGTGAAGCTTGCAGAATCCTTTGGATTTTGCTGGGGTGTGGAACGAGCCGTTCAGATTGCATATGAAGCGAGGAAACAGTTTCCCAGTGAGAGAATCTGGATCACTAACGAAATAATTCACAACCCAACTGTTAATAAGCGACTGGAAGAAATGGAAGTGCAGAATATCCCTCTTGAGGAAGGAAAGAAGCAATTTGAGGTTGTTGACAAAGGTGATGTTGTGATTTTACCAGCTTTTGGAGCTGCTGTAGATGAAATGTTGACTTTGAGCGAGAAAAATGTACAAATTGTAGATACAACTTGCCCTTGGGTGAGCAAGGTGTGGAACGTAGTGGAGAAGCACAAGAAAGGAGATTATACTTCAATTATTCATGGGAAATACGCTCATGAAGAGACCGTTGCTACTTCATCTTTTGCTGGGACATACATAATTGTGAAGAATATGAAAGAGGCAACTTATGTGTGTGATTATATTCTTGGTGGGCAACTTGATGGATCTAGTTCAACCAGAGAGGCGTTTCTAGAGAAATTCAAATATGCTGTTTCCGATGGGTTTGATCCAGACAGAGACCTAGTAAAAACTGGAATAGCAAACCAAACTACAATGCTTAAGGGAGAAACAGAAGATATCGGAAAGCTTGTTGAGAGAACCATGATGCGGAAGTATGGGGTTGAGAACTTAAACAACCACTTCTTGAGTTTCAACACAATTTGCGATGCTACTCAAGAGCGACAAGATGCAATGTATAAGCTGGTGGAAGAAAAAGTTGATCTTATGCTGGTGGTCGGAGGCTGGAACTCCAGCAACACCTCTCATTTGCAAGAAATAGTCGAGGAGCGTGGGATCCCTTCATATTGGATTGACAGTGAAGAAAGAATAGGCCCCGGAAACAAAATAAGCTACAAGTTGAACCATGGGGAGCTAGTTGAGAAAGAAAATTGGCTACCAGAAGGTCCAATCACTATCGGAATAACTTCTGGTGCTTCTACCCCAGATAAGTTATTTCTTTTTCTAGGTTGTGGAAGATGTCTTGGTCAAAGTTTTTGA ATGGCGATTTCTCCTCATCTCAGCCGCATCATCACCTTCACCGAACTCCGGTTGCCGGAAACTCAATTCCGCCCAAACTTCCACAGGAAGCCTCACCTCTCCGTCCGATGTGTCGCCGGTGAGTCTCCGACGTCTTCATCATCCTCCGCCGTTGATTCCAAATTTGATGCTAAGAAGTTCCATCACAACTTGACGAGGAGTGAGAATTATAATCGCAAGGGTTTTGGACACAAAGAAGAGACTCTCCAGCTTATGAATAGCGAGTATACTAGTGATATAGTAGAGACTTTGAAGAAGAATGGATACGAGTATACTTGGGGCAATGTCACGGTGAAGCTTGCAGAATCCTTTGGATTTTGCTGGGGTGTGGAACGAGCCGTTCAGATTGCATATGAAGCGAGGAAACAGTTTCCCAGTGAGAGAATCTGGATCACTAACGAAATAATTCACAACCCAACTGTTAATAAGCGACTGGAAGAAATGGAAGTGCAGAATATCCCTCTTGAGGAAGGAAAGAAGCAATTTGAGGTTGTTGACAAAGGTGATGTTGTGATTTTACCAGCTTTTGGAGCTGCTGTAGATGAAATGTTGACTTTGAGCGAGAAAAATGTACAAATTGTAGATACAACTTGCCCTTGGGTGAGCAAGGTGTGGAACGTAGTGGAGAAGCACAAGAAAGGAGATTATACTTCAATTATTCATGGGAAATACGCTCATGAAGAGACCGTTGCTACTTCATCTTTTGCTGGGACATACATAATTGTGAAGAATATGAAAGAGGCAACTTATGTGTGTGATTATATTCTTGGTGGGCAACTTGATGGATCTAGTTCAACCAGAGAGGCGTTTCTAGAGAAATTCAAATATGCTGTTTCCGATGGGTTTGATCCAGACAGAGACCTAGTAAAAACTGGAATAGCAAACCAAACTACAATGCTTAAGGGAGAAACAGAAGATATCGGAAAGCTTGTTGAGAGAACCATGATGCGGAAGTATGGGGTTGAGAACTTAAACAACCACTTCTTGAGTTTCAACACAATTTGCGATGCTACTCAAGAGCGACAAGATGCAATGTATAAGCTGGTGGAAGAAAAAGTTGATCTTATGCTGGTGGTCGGAGGCTGGAACTCCAGCAACACCTCTCATTTGCAAGAAATAGTCGAGGAGCGTGGGATCCCTTCATATTGGATTGACAGTGAAGAAAGAATAGGCCCCGGAAACAAAATAAGCTACAAGTTGAACCATGGGGAGCTAGTTGAGAAAGAAAATTGGCTACCAGAAGGTCCAATCACTATCGGAATAACTTCTGGTGCTTCTACCCCAGATAAGTTATTTCTTTTTCTAGGTTGTGGAAGATGTCTTGGTCAAAGTTTTTGA MAISPHLSRIITFTELRLPETQFRPNFHRKPHLSVRCVAGESPTSSSSSAVDSKFDAKKFHHNLTRSENYNRKGFGHKEETLQLMNSEYTSDIVETLKKNGYEYTWGNVTVKLAESFGFCWGVERAVQIAYEARKQFPSERIWITNEIIHNPTVNKRLEEMEVQNIPLEEGKKQFEVVDKGDVVILPAFGAAVDEMLTLSEKNVQIVDTTCPWVSKVWNVVEKHKKGDYTSIIHGKYAHEETVATSSFAGTYIIVKNMKEATYVCDYILGGQLDGSSSTREAFLEKFKYAVSDGFDPDRDLVKTGIANQTTMLKGETEDIGKLVERTMMRKYGVENLNNHFLSFNTICDATQERQDAMYKLVEEKVDLMLVVGGWNSSNTSHLQEIVEERGIPSYWIDSEERIGPGNKISYKLNHGELVEKENWLPEGPITIGITSGASTPDKLFLFLGCGRCLGQSF Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Homology
BLAST of Spo03335.1 vs. NCBI nr
Match: gi|902186035|gb|KNA10609.1| (hypothetical protein SOVF_142790 [Spinacia oleracea]) HSP 1 Score: 903.3 bits (2333), Expect = 1.800e-259 Identity = 443/444 (99.77%), Postives = 444/444 (100.00%), Query Frame = 1
BLAST of Spo03335.1 vs. NCBI nr
Match: gi|731358793|ref|XP_010690939.1| (PREDICTED: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 803.1 bits (2073), Expect = 2.500e-229 Identity = 391/444 (88.06%), Postives = 416/444 (93.69%), Query Frame = 1
BLAST of Spo03335.1 vs. NCBI nr
Match: gi|747082064|ref|XP_011088335.1| (PREDICTED: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic [Sesamum indicum]) HSP 1 Score: 754.6 bits (1947), Expect = 1.000e-214 Identity = 364/445 (81.80%), Postives = 406/445 (91.24%), Query Frame = 1
BLAST of Spo03335.1 vs. NCBI nr
Match: gi|703097851|ref|XP_010096225.1| (4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Morus notabilis]) HSP 1 Score: 754.2 bits (1946), Expect = 1.300e-214 Identity = 372/444 (83.78%), Postives = 405/444 (91.22%), Query Frame = 1
BLAST of Spo03335.1 vs. NCBI nr
Match: gi|747090179|ref|XP_011092767.1| (PREDICTED: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic-like [Sesamum indicum]) HSP 1 Score: 753.8 bits (1945), Expect = 1.700e-214 Identity = 372/446 (83.41%), Postives = 411/446 (92.15%), Query Frame = 1
BLAST of Spo03335.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QTN2_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_142790 PE=3 SV=1) HSP 1 Score: 903.3 bits (2333), Expect = 1.200e-259 Identity = 443/444 (99.77%), Postives = 444/444 (100.00%), Query Frame = 1
BLAST of Spo03335.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BK59_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_9g217920 PE=3 SV=1) HSP 1 Score: 803.1 bits (2073), Expect = 1.700e-229 Identity = 391/444 (88.06%), Postives = 416/444 (93.69%), Query Frame = 1
BLAST of Spo03335.1 vs. UniProtKB/TrEMBL
Match: W9R118_9ROSA (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Morus notabilis GN=L484_026961 PE=3 SV=1) HSP 1 Score: 754.2 bits (1946), Expect = 9.200e-215 Identity = 372/444 (83.78%), Postives = 405/444 (91.22%), Query Frame = 1
BLAST of Spo03335.1 vs. UniProtKB/TrEMBL
Match: A0A022RCG7_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a005937mg PE=3 SV=1) HSP 1 Score: 752.3 bits (1941), Expect = 3.500e-214 Identity = 368/453 (81.24%), Postives = 409/453 (90.29%), Query Frame = 1
BLAST of Spo03335.1 vs. UniProtKB/TrEMBL
Match: A0A0M4K5E2_MORAL (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Morus alba PE=2 SV=1) HSP 1 Score: 750.7 bits (1937), Expect = 1.000e-213 Identity = 366/445 (82.25%), Postives = 407/445 (91.46%), Query Frame = 1
BLAST of Spo03335.1 vs. ExPASy Swiss-Prot
Match: ISPH_ORYSJ (4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic OS=Oryza sativa subsp. japonica GN=ISPH PE=2 SV=1) HSP 1 Score: 705.7 bits (1820), Expect = 3.400e-202 Identity = 333/416 (80.05%), Postives = 386/416 (92.79%), Query Frame = 1
BLAST of Spo03335.1 vs. ExPASy Swiss-Prot
Match: ISPH_ARATH (4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic OS=Arabidopsis thaliana GN=ISPH PE=2 SV=1) HSP 1 Score: 702.2 bits (1811), Expect = 3.700e-201 Identity = 339/451 (75.17%), Postives = 390/451 (86.47%), Query Frame = 1
BLAST of Spo03335.1 vs. ExPASy Swiss-Prot
Match: ISPH_CYAP4 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=ispH PE=3 SV=1) HSP 1 Score: 531.6 bits (1368), Expect = 8.700e-150 Identity = 256/390 (65.64%), Postives = 311/390 (79.74%), Query Frame = 1
BLAST of Spo03335.1 vs. ExPASy Swiss-Prot
Match: ISPH_CYAA5 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Cyanothece sp. (strain ATCC 51142) GN=ispH PE=3 SV=1) HSP 1 Score: 531.2 bits (1367), Expect = 1.100e-149 Identity = 255/389 (65.55%), Postives = 310/389 (79.69%), Query Frame = 1
BLAST of Spo03335.1 vs. ExPASy Swiss-Prot
Match: ISPH_THEEB (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Thermosynechococcus elongatus (strain BP-1) GN=ispH PE=3 SV=1) HSP 1 Score: 528.1 bits (1359), Expect = 9.600e-149 Identity = 257/389 (66.07%), Postives = 304/389 (78.15%), Query Frame = 1
BLAST of Spo03335.1 vs. TAIR (Arabidopsis)
Match: AT4G34350.1 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase) HSP 1 Score: 702.2 bits (1811), Expect = 2.100e-202 Identity = 339/451 (75.17%), Postives = 390/451 (86.47%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo03335.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo03335.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo03335.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo03335.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 1
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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