Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AGTACATGATTAAGAGGAACTTTCCGCTCCATACACATACAAGTGTCTCTAATAAAAATCAAACAAATTATTAAGTCAAAACTTGTGCCCTACAATTCCACACAAAAATAGAAATAAATAAATAAATATATATATAATTCGAACCTCCACTCAAATAAAACTTTCTTCTTCAGTTGACACCAGGGTAGGCTCTTTCTCCCATTTCCCCTAGATGTTCTTTTGCAGCATCTATATATCATTGAATCAATCCAAAGTCCAAACACATAAAACCAATTAAATATCATTACCATTTACCACCAATAGTTATCAATGTCACCCACTACCGAACCTTTTCAAGGTACGTACATTCTCCCTCTCGGCCTTGCCTCTTTAATTGTCCGTTTAAAATAATCCTTAAAATCGAACTAGGCCGAGTCGATCTAATAAAAATAGGGTATATTATATACTATATTATAGTCGTGCGATACATGTTCAACCCCTCTATTGTTTTCGTAATTAATACAGCAATTAGGATTGACTTGTAAGTTGTTTTTCGGTTTGTTTTTGGGAAATGATGGATTCAGTTGAGACAACGCAGCACCTACTAGTTAGCATCGAAGATGATAACGAAAGTGGGAATAATACTGTGAATGGTGAAAAGAAAATCGAAATTAAGAATTTGAGGAAAGTATCAGATAAGGGAGTGAGCATACTAGATGGGGTGGACCTGCAGATTTCAAGGGGCATGATTGTAGGGATCATAGGGCCTAGTGGTAGTGGGAAGTCAACGCTGCTAAGAGCGTTGAATCGGTTATGGGAACCACCTGCCGGAACGGTGTTTTTGGATGGCCGTGATATTTGTCATCTTGATGTGCTCTCCGTTCGTCGTCGTGTTGGTATGCTCTTCCAACTCCCTGCGCTTTTTCAAGGTATCCCTTAATCATTTCTTTTTCTTGGCTTTAATTTTATTTTTATGGTTATAAGTTATATCTAGTTGGTTGCAAGTTGGAAGTGTAGGTAGATTCATATAAAGATAGGCCGTTGTCTATATGCACTTTCTTGCTTTTTTCAGTCCTATGATTAGAAATTTATTACTCTGCTTAGAAAATCCAAGTTTGTGGACTGAATTATAATCTCTCTGTCAGTCTAACTTGTGCAAGAGTCGATTATGTTCCAAATTATCGAATTAACTAGTTTATAAATGGGATCTTGAGACATCACATGAGTCTTAGGGGGTTTGTTAGCATATGAATTCCAAATGGAGCTTTGAAGTTTACAAATTACTGTCATCCAAACAAGCATAGTGTACTGCGATCGAAACAGAGGAAGTATATGCCACATACCTGCAGGCTGTAGCTCTTTTTGTTTGAATCTTAAATTAACCTTAGATGGATGTTGCATATTGCATATTGCATATTGCATATTGCATATTGCAGGAACTGTGGGAGATAATATACGTTATGGTCCAAAATTAAAGGGACAGAAGCTAAGTGATCAGGAAGTTGAAAGATTGTTAAGTGCTGCTGATCTTGATGCCTCTTTCATCAACCAGAATGCGAACCAACTATCTGTCGGACAACAGCAACGAGTTGCACTCGCAAGGACCCTTGCCAATGAACCCGAGGTAATCACAATGTTCTTTTCACCTTATTTTTATGGCTTAGTATTACTTATTCTCTTAAAGTCAGATCAGATAACAAAAATTCAGACCATACCAGAAATTATCACAAGGGAAAAATCAAACCAAACTAGACCTACGTTTTACTTTATACAAATACTAAGATTTTGAGTGTTACATTGTTCAAAGGTTTTGCTGCTAGATGAACCTACAAGCGCGTTAGATCCAATATCGACTCAAAACATAGAGGAAGCACTTGTCAAGTTGAACACGACACAGGGGATCACAGTGATCATGGTTTCCCATAGCATAAGGCAAGTGCAAAGAATAGCTGATATTGTTTGCCTCTTGGTAAATGGCACCGTCGTTGAAGTTTTGCCACCTAATCAACTTTCCCACGCTAAGCATCCCATGGCTAAAAGATTTCTCGAGCTCAGTTCCTGATACTACCTTCAGTTTTACCAATTAAGCCGAAAATCCACTTCTTCCTCATCTGAATATCAACAAGGTTTGTACCAAACATATATAGAATTGAAGGAAGTTTGTCTGATATAGATGTAAAAGACCTACTTCATGTAATTGTTACATGCTAGTACCCAATAACAGGTTAGTCTGTGTGTACACTTTGGATAATATCGAATATATGCATCTAACTGAATGAAACGTGTGTTAATTAAGTCAACAAGGCTTTGTGGCTGTGTTCGGGGGTAAACCCCCGTGTCTAAGGTGGTCCTCCTATTGAGGATCACCACAAAAATCCACATGTCACATTATGGTTGGCTTATTTTGTGGTCCCTGCCTCCTCCATAGACATTATTTTCTGAAAATGATTGAAATAATATTTGCTTATTAGTTATAACTAACTAAAACGTAATTAGCTTAATAATTAAATATGTTAAACAAATCAATCCTCCGGCCCTCTGCCGCCGCAAACCACTACCTCGAGAACCGGCGGTCACTTGCGGTATCACTTTTTAATTATCCTTGTCTTTATGCGGGAGCGACCCGCATTTGCTAAGTATCTGCTAACAACAGATGCCGTGCACTTGCGGTATCACTTTTTAATTCATTGGGACCATGTACATATTTAATTTAGTTCTCTCCTTTTTTTAGGGTTCTTCATTAGTTTAGAGAGAGAAAAGTGAGAAATTATGAATGAAATTAGGGGTTTGATAATCAAGGGTGCAATTTGGTTTAAAGATTC AGTACATGATTAAGAGGAACTTTCCGCTCCATACACATACAAGTGTCTCTAATAAAAATCAAACAAATTATTAAGTCAAAACTTGTGCCCTACAATTCCACACAAAAATAGAAATAAATAAATAAATATATATATAATTCGAACCTCCACTCAAATAAAACTTTCTTCTTCAGTTGACACCAGGGTAGGCTCTTTCTCCCATTTCCCCTAGATGTTCTTTTGCAGCATCTATATATCATTGAATCAATCCAAAGTCCAAACACATAAAACCAATTAAATATCATTACCATTTACCACCAATAGTTATCAATGTCACCCACTACCGAACCTTTTCAAGTTGAGACAACGCAGCACCTACTAGTTAGCATCGAAGATGATAACGAAAGTGGGAATAATACTGTGAATGGTGAAAAGAAAATCGAAATTAAGAATTTGAGGAAAGTATCAGATAAGGGAGTGAGCATACTAGATGGGGTGGACCTGCAGATTTCAAGGGGCATGATTGTAGGGATCATAGGGCCTAGTGGTAGTGGGAAGTCAACGCTGCTAAGAGCGTTGAATCGGTTATGGGAACCACCTGCCGGAACGGTGTTTTTGGATGGCCGTGATATTTGTCATCTTGATGTGCTCTCCGTTCGTCGTCGTGTTGGTATGCTCTTCCAACTCCCTGCGCTTTTTCAAGGAACTGTGGGAGATAATATACGTTATGGTCCAAAATTAAAGGGACAGAAGCTAAGTGATCAGGAAGTTGAAAGATTGTTAAGTGCTGCTGATCTTGATGCCTCTTTCATCAACCAGAATGCGAACCAACTATCTGTCGGACAACAGCAACGAGTTGCACTCGCAAGGACCCTTGCCAATGAACCCGAGGTTTTGCTGCTAGATGAACCTACAAGCGCGTTAGATCCAATATCGACTCAAAACATAGAGGAAGCACTTGTCAAGTTGAACACGACACAGGGGATCACAGTGATCATGGTTTCCCATAGCATAAGGCAAGTGCAAAGAATAGCTGATATTGTTTGCCTCTTGGTAAATGGCACCGTCGTTGAAGTTTTGCCACCTAATCAACTTTCCCACGCTAAGCATCCCATGGCTAAAAGATTTCTCGAGCTCAGTTCCTGATACTACCTTCAGTTTTACCAATTAAGCCGAAAATCCACTTCTTCCTCATCTGAATATCAACAAGGTTTGTACCAAACATATATAGAATTGAAGGAAGTTTGTCTGATATAGATGTAAAAGACCTACTTCATGTAATTGTTACATGCTAGTACCCAATAACAGGTTAGTCTGTGTGTACACTTTGGATAATATCGAATATATGCATCTAACTGAATGAAACGTGTGTTAATTAAGTCAACAAGGCTTTGTGGCTGTGTTCGGGGGTAAACCCCCGTGTCTAAGGTGGTCCTCCTATTGAGGATCACCACAAAAATCCACATGTCACATTATGGTTGGCTTATTTTGTGGTCCCTGCCTCCTCCATAGACATTATTTTCTGAAAATGATTGAAATAATATTTGCTTATTAGTTATAACTAACTAAAACGTAATTAGCTTAATAATTAAATATGTTAAACAAATCAATCCTCCGGCCCTCTGCCGCCGCAAACCACTACCTCGAGAACCGGCGGTCACTTGCGGTATCACTTTTTAATTATCCTTGTCTTTATGCGGGAGCGACCCGCATTTGCTAAGTATCTGCTAACAACAGATGCCGTGCACTTGCGGTATCACTTTTTAATTCATTGGGACCATGTACATATTTAATTTAGTTCTCTCCTTTTTTTAGGGTTCTTCATTAGTTTAGAGAGAGAAAAGTGAGAAATTATGAATGAAATTAGGGGTTTGATAATCAAGGGTGCAATTTGGTTTAAAGATTC ATGTCACCCACTACCGAACCTTTTCAAGTTGAGACAACGCAGCACCTACTAGTTAGCATCGAAGATGATAACGAAAGTGGGAATAATACTGTGAATGGTGAAAAGAAAATCGAAATTAAGAATTTGAGGAAAGTATCAGATAAGGGAGTGAGCATACTAGATGGGGTGGACCTGCAGATTTCAAGGGGCATGATTGTAGGGATCATAGGGCCTAGTGGTAGTGGGAAGTCAACGCTGCTAAGAGCGTTGAATCGGTTATGGGAACCACCTGCCGGAACGGTGTTTTTGGATGGCCGTGATATTTGTCATCTTGATGTGCTCTCCGTTCGTCGTCGTGTTGGTATGCTCTTCCAACTCCCTGCGCTTTTTCAAGGAACTGTGGGAGATAATATACGTTATGGTCCAAAATTAAAGGGACAGAAGCTAAGTGATCAGGAAGTTGAAAGATTGTTAAGTGCTGCTGATCTTGATGCCTCTTTCATCAACCAGAATGCGAACCAACTATCTGTCGGACAACAGCAACGAGTTGCACTCGCAAGGACCCTTGCCAATGAACCCGAGGTTTTGCTGCTAGATGAACCTACAAGCGCGTTAGATCCAATATCGACTCAAAACATAGAGGAAGCACTTGTCAAGTTGAACACGACACAGGGGATCACAGTGATCATGGTTTCCCATAGCATAAGGCAAGTGCAAAGAATAGCTGATATTGTTTGCCTCTTGGTAAATGGCACCGTCGTTGAAGTTTTGCCACCTAATCAACTTTCCCACGCTAAGCATCCCATGGCTAAAAGATTTCTCGAGCTCAGTTCCTGA MSPTTEPFQVETTQHLLVSIEDDNESGNNTVNGEKKIEIKNLRKVSDKGVSILDGVDLQISRGMIVGIIGPSGSGKSTLLRALNRLWEPPAGTVFLDGRDICHLDVLSVRRRVGMLFQLPALFQGTVGDNIRYGPKLKGQKLSDQEVERLLSAADLDASFINQNANQLSVGQQQRVALARTLANEPEVLLLDEPTSALDPISTQNIEEALVKLNTTQGITVIMVSHSIRQVQRIADIVCLLVNGTVVEVLPPNQLSHAKHPMAKRFLELSS Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Homology
BLAST of Spo03421.1 vs. NCBI nr
Match: gi|902186177|gb|KNA10635.1| (hypothetical protein SOVF_142150 [Spinacia oleracea]) HSP 1 Score: 521.5 bits (1342), Expect = 8.500e-145 Identity = 271/271 (100.00%), Postives = 271/271 (100.00%), Query Frame = 1
BLAST of Spo03421.1 vs. NCBI nr
Match: gi|731329118|ref|XP_010675422.1| (PREDICTED: ABC transporter I family member 17 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 436.0 bits (1120), Expect = 4.700e-119 Identity = 232/276 (84.06%), Postives = 253/276 (91.67%), Query Frame = 1
BLAST of Spo03421.1 vs. NCBI nr
Match: gi|950930085|ref|XP_014503504.1| (PREDICTED: ABC transporter I family member 17 [Vigna radiata var. radiata]) HSP 1 Score: 362.5 bits (929), Expect = 6.600e-97 Identity = 179/240 (74.58%), Postives = 217/240 (90.42%), Query Frame = 1
BLAST of Spo03421.1 vs. NCBI nr
Match: gi|590568576|ref|XP_007010833.1| (Non-intrinsic ABC protein 3 [Theobroma cacao]) HSP 1 Score: 359.8 bits (922), Expect = 4.300e-96 Identity = 178/260 (68.46%), Postives = 221/260 (85.00%), Query Frame = 1
BLAST of Spo03421.1 vs. NCBI nr
Match: gi|965656200|dbj|BAT72619.1| (hypothetical protein VIGAN_01004100 [Vigna angularis var. angularis]) HSP 1 Score: 358.6 bits (919), Expect = 9.500e-96 Identity = 178/240 (74.17%), Postives = 215/240 (89.58%), Query Frame = 1
BLAST of Spo03421.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QTS1_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_142150 PE=4 SV=1) HSP 1 Score: 521.5 bits (1342), Expect = 5.900e-145 Identity = 271/271 (100.00%), Postives = 271/271 (100.00%), Query Frame = 1
BLAST of Spo03421.1 vs. UniProtKB/TrEMBL
Match: A0A0J8FBI2_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g086170 PE=4 SV=1) HSP 1 Score: 436.0 bits (1120), Expect = 3.300e-119 Identity = 232/276 (84.06%), Postives = 253/276 (91.67%), Query Frame = 1
BLAST of Spo03421.1 vs. UniProtKB/TrEMBL
Match: A0A061FRX8_THECC (Non-intrinsic ABC protein 3 OS=Theobroma cacao GN=TCM_044780 PE=4 SV=1) HSP 1 Score: 359.8 bits (922), Expect = 3.000e-96 Identity = 178/260 (68.46%), Postives = 221/260 (85.00%), Query Frame = 1
BLAST of Spo03421.1 vs. UniProtKB/TrEMBL
Match: A0A0S3QWB0_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.01G004100 PE=4 SV=1) HSP 1 Score: 358.6 bits (919), Expect = 6.700e-96 Identity = 178/240 (74.17%), Postives = 215/240 (89.58%), Query Frame = 1
BLAST of Spo03421.1 vs. UniProtKB/TrEMBL
Match: V7CTD9_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G330700g PE=4 SV=1) HSP 1 Score: 357.1 bits (915), Expect = 1.900e-95 Identity = 179/240 (74.58%), Postives = 213/240 (88.75%), Query Frame = 1
BLAST of Spo03421.1 vs. ExPASy Swiss-Prot
Match: AB17I_ARATH (ABC transporter I family member 17 OS=Arabidopsis thaliana GN=ABCI17 PE=2 SV=1) HSP 1 Score: 338.2 bits (866), Expect = 8.400e-92 Identity = 166/238 (69.75%), Postives = 203/238 (85.29%), Query Frame = 1
BLAST of Spo03421.1 vs. ExPASy Swiss-Prot
Match: STAR1_ORYSJ (Protein STAR1 OS=Oryza sativa subsp. japonica GN=STAR1 PE=1 SV=1) HSP 1 Score: 335.5 bits (859), Expect = 5.400e-91 Identity = 174/271 (64.21%), Postives = 218/271 (80.44%), Query Frame = 1
BLAST of Spo03421.1 vs. ExPASy Swiss-Prot
Match: PSTB1_CALS4 (Phosphate import ATP-binding protein PstB 1 OS=Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) GN=pstB1 PE=3 SV=1) HSP 1 Score: 181.8 bits (460), Expect = 1.000e-44 Identity = 98/213 (46.01%), Postives = 142/213 (66.67%), Query Frame = 1
BLAST of Spo03421.1 vs. ExPASy Swiss-Prot
Match: PSTB2_CALS4 (Phosphate import ATP-binding protein PstB 2 OS=Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) GN=pstB2 PE=3 SV=1) HSP 1 Score: 166.0 bits (419), Expect = 5.700e-40 Identity = 103/243 (42.39%), Postives = 156/243 (64.20%), Query Frame = 1
BLAST of Spo03421.1 vs. ExPASy Swiss-Prot
Match: PSTB_THEMA (Phosphate import ATP-binding protein PstB OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) GN=pstB PE=3 SV=1) HSP 1 Score: 159.5 bits (402), Expect = 5.300e-38 Identity = 99/248 (39.92%), Postives = 153/248 (61.69%), Query Frame = 1
BLAST of Spo03421.1 vs. TAIR (Arabidopsis)
Match: AT1G67940.1 (non-intrinsic ABC protein 3) HSP 1 Score: 338.2 bits (866), Expect = 4.700e-93 Identity = 166/238 (69.75%), Postives = 203/238 (85.29%), Query Frame = 1
BLAST of Spo03421.1 vs. TAIR (Arabidopsis)
Match: AT5G46540.1 (P-glycoprotein 7) HSP 1 Score: 134.8 bits (338), Expect = 7.900e-32 Identity = 79/228 (34.65%), Postives = 130/228 (57.02%), Query Frame = 1
BLAST of Spo03421.1 vs. TAIR (Arabidopsis)
Match: AT1G27940.1 (P-glycoprotein 13) HSP 1 Score: 132.5 bits (332), Expect = 3.900e-31 Identity = 87/243 (35.80%), Postives = 141/243 (58.02%), Query Frame = 1
BLAST of Spo03421.1 vs. TAIR (Arabidopsis)
Match: AT4G25960.1 (P-glycoprotein 2) HSP 1 Score: 132.5 bits (332), Expect = 3.900e-31 Identity = 87/231 (37.66%), Postives = 130/231 (56.28%), Query Frame = 1
BLAST of Spo03421.1 vs. TAIR (Arabidopsis)
Match: AT1G28010.1 (P-glycoprotein 14) HSP 1 Score: 130.6 bits (327), Expect = 1.500e-30 Identity = 75/209 (35.89%), Postives = 127/209 (60.77%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo03421.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo03421.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo03421.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo03421.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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