Spo03560.1 (mRNA) | SpinachBase

Overview


Name	Spo03560.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	(Peroxiredoxin, putative) (1.11.1.15)
Location	chr3 : 22780441 .. 22781376 (-)
Sequence length	443

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CCCAAAAGTCCAAAACCCAACTATAAACAATCCCTCTAAGAGCTAAAACGACCACAATTGCAGAACAAGAAGAGTGACTTCCTTCAAAAACGCCATTTCCTTTCAATTTGATCAACTGTAAAAAGCTTAAAGACTCGAATCTTTAGCTTCTTTCAATATCAGTTCCTTGCTTGCATAAAAAAAAAAGCTTAAAGAATAAAATGGCATCAACGCTGATTAAGCAATCGTCAATTCTGAAAACGCTAACTGGAGGGCTGAGATTCTTTGCATCAAAGGAGCTTATATCGTCTATAGTGGGATCTGACATAGTCTCGGCTGCACCTGATGTTTCCCTCCCTAAGGCTTGCTCATACGATGAAGGTGTCTCTTCCAAATTCGCCACCACCCCTTTGCACGACATTTTTAAGGTTTATTTCAAAATTAATTATTTGTTTTTTCAATTTAGTTTCTTTAATTTTTGGAAATGATCTTAATTTCATTTAATTATTTCTTCAGGGGAAGAAAGTTGTCATCTTTGGCATCCCTGTAAGTCAATATTTATCTATTCTATGATTTTTTATTGGTGTGATGATTACTTTAATGTTCACTATATAATTTTTTAATTCAAATTTCTGGGTTTTTCTGGGGTTTGCTGTGTTCTTGACTGAATTCATGTTATTGTGGAACTTAGATTAATATAATTGAATATTGTTATGCAAATTTTAGCTGTGATTATTGAGATTTTATAACATGAAGATGTTTAGCAAGATAGCTTGATTTGCTGTGTTCTACTTTAAGTCATGCATATAAAATTTGAATTTGAAGATGTCACGGCCGCGGTGCATTATGTTGTACGGAGTACTTGTGAACATTGATCCTGTAATTGTTATTGTGGAGGTTTTACTGCAACGAATACGATGGTGTATAACTGTATATGTTGGTATTTTACAGGTGTAA

mRNA sequence

CCCAAAAGTCCAAAACCCAACTATAAACAATCCCTCTAAGAGCTAAAACGACCACAATTGCAGAACAAGAAGAGTGACTTCCTTCAAAAACGCCATTTCCTTTCAATTTGATCAACTGTAAAAAGCTTAAAGACTCGAATCTTTAGCTTCTTTCAATATCAGTTCCTTGCTTGCATAAAAAAAAAAGCTTAAAGAATAAAATGGCATCAACGCTGATTAAGCAATCGTCAATTCTGAAAACGCTAACTGGAGGGCTGAGATTCTTTGCATCAAAGGAGCTTATATCGTCTATAGTGGGATCTGACATAGTCTCGGCTGCACCTGATGTTTCCCTCCCTAAGGCTTGCTCATACGATGAAGGTGTCTCTTCCAAATTCGCCACCACCCCTTTGCACGACATTTTTAAGGGGAAGAAAGTTGTCATCTTTGGCATCCCTGTGTAA

Coding sequence (CDS)

ATGGCATCAACGCTGATTAAGCAATCGTCAATTCTGAAAACGCTAACTGGAGGGCTGAGATTCTTTGCATCAAAGGAGCTTATATCGTCTATAGTGGGATCTGACATAGTCTCGGCTGCACCTGATGTTTCCCTCCCTAAGGCTTGCTCATACGATGAAGGTGTCTCTTCCAAATTCGCCACCACCCCTTTGCACGACATTTTTAAGGGGAAGAAAGTTGTCATCTTTGGCATCCCTGTGTAA

Protein sequence

MASTLIKQSSILKTLTGGLRFFASKELISSIVGSDIVSAAPDVSLPKACSYDEGVSSKFATTPLHDIFKGKKVVIFGIPV

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo03560	Spo03560	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo03560.1	Spo03560.1-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo03560.1.utr5p.1	Spo03560.1.utr5p.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo03560.1.CDS.3	Spo03560.1.CDS.3	CDS
Spo03560.1.CDS.2	Spo03560.1.CDS.2	CDS
Spo03560.1.CDS.1	Spo03560.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo03560.1.exon.3	Spo03560.1.exon.3	exon
Spo03560.1.exon.2	Spo03560.1.exon.2	exon
Spo03560.1.exon.1	Spo03560.1.exon.1	exon

Homology

[Close]

BLAST of Spo03560.1 vs. NCBI nr
Match: gi|902197147|gb|KNA13340.1| (hypothetical protein SOVF_117800 [Spinacia oleracea])

HSP 1 Score: 152.1 bits (383), Expect = 4.000e-34
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 1


		  
Query: 1  MASTLIKQSSILKTLTGGLRFFASKELISSIVGSDIVSAAPDVSLPKACSYDEGVSSKFA 60
          MASTLIKQSSILKTLTGGLRFFASKELISSIVGSDIVSAAPDVSLPKACSYDEGVSSKFA
Sbjct: 1  MASTLIKQSSILKTLTGGLRFFASKELISSIVGSDIVSAAPDVSLPKACSYDEGVSSKFA 60

Query: 61 TTPLHDIFKGKKVVIFGIP 80
          TTPLHDIFKGKKVVIFGIP
Sbjct: 61 TTPLHDIFKGKKVVIFGIP 79

[Close]

BLAST of Spo03560.1 vs. NCBI nr
Match: gi|731366824|ref|XP_010695279.1| (PREDICTED: peroxiredoxin-2F, mitochondrial isoform X1 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 114.0 bits (284), Expect = 1.200e-22
Identity = 58/78 (74.36%), Postives = 68/78 (87.18%), Query Frame = 1


		  
Query: 2  ASTLIKQSSILKTLTGGLRFFASKELISSIVGSDIVSAAPDVSLPKACSYDEGVSSKFAT 61
          +S +IK+SS+LK+LTGGLR  AS+   S  VGSDIVSAAPD+SL KA +YDEGVSSKF+T
Sbjct: 3  SSMVIKRSSVLKSLTGGLRVAASRAYASVAVGSDIVSAAPDISLQKARTYDEGVSSKFST 62

Query: 62 TPLHDIFKGKKVVIFGIP 80
          TPLHDIFKGKKVVIFG+P
Sbjct: 63 TPLHDIFKGKKVVIFGLP 80

[Close]

BLAST of Spo03560.1 vs. NCBI nr
Match: gi|731366826|ref|XP_010695280.1| (PREDICTED: peroxiredoxin-2F, mitochondrial isoform X2 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 114.0 bits (284), Expect = 1.200e-22
Identity = 58/78 (74.36%), Postives = 68/78 (87.18%), Query Frame = 1


		  
Query: 2  ASTLIKQSSILKTLTGGLRFFASKELISSIVGSDIVSAAPDVSLPKACSYDEGVSSKFAT 61
          +S +IK+SS+LK+LTGGLR  AS+   S  VGSDIVSAAPD+SL KA +YDEGVSSKF+T
Sbjct: 3  SSMVIKRSSVLKSLTGGLRVAASRAYASVAVGSDIVSAAPDISLQKARTYDEGVSSKFST 62

Query: 62 TPLHDIFKGKKVVIFGIP 80
          TPLHDIFKGKKVVIFG+P
Sbjct: 63 TPLHDIFKGKKVVIFGLP 80

[Close]

BLAST of Spo03560.1 vs. NCBI nr
Match: gi|719972652|ref|XP_010278123.1| (PREDICTED: peroxiredoxin-2F, mitochondrial [Nelumbo nucifera])

HSP 1 Score: 94.0 bits (232), Expect = 1.300e-16
Identity = 51/81 (62.96%), Postives = 63/81 (77.78%), Query Frame = 1


		  
Query: 1  MASTLIKQSSI--LKTLTGGLRFFASKELISSIVGSDIVSAAPDVSLPKACSYDEGVSSK 60
          MAS ++K+S+   +K++ GGLR   S+   S  VG+DIVSAAP VSL KA S+DEGVSSK
Sbjct: 1  MASAMLKRSNCFSMKSIVGGLRIAVSRAFASVSVGTDIVSAAPGVSLQKARSWDEGVSSK 60

Query: 61 FATTPLHDIFKGKKVVIFGIP 80
          F+TTPL DIFK KKVVIFG+P
Sbjct: 61 FSTTPLKDIFKDKKVVIFGLP 81

[Close]

BLAST of Spo03560.1 vs. NCBI nr
Match: gi|384236168|gb|AFH74409.1| (type II peroxiredoxin [Tamarix hispida])

HSP 1 Score: 91.7 bits (226), Expect = 6.400e-16
Identity = 50/77 (64.94%), Postives = 61/77 (79.22%), Query Frame = 1


		  
Query: 3  STLIKQSSILKTLTGGLRFFASKELISSIVGSDIVSAAPDVSLPKACSYDEGVSSKFATT 62
          S L+K+SS +  + G LR  AS+   S  VGSDIVSAAPDV+L KA S+DEGVSSKF+TT
Sbjct: 2  SALLKRSSSM-AIIGSLRAAASRAYASIAVGSDIVSAAPDVALQKARSWDEGVSSKFSTT 61

Query: 63 PLHDIFKGKKVVIFGIP 80
          PL D+FKG+KVVIFG+P
Sbjct: 62 PLSDLFKGRKVVIFGLP 77

[Close]

BLAST of Spo03560.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R1E4_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_117800 PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 2.800e-34
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 1


		  
Query: 1  MASTLIKQSSILKTLTGGLRFFASKELISSIVGSDIVSAAPDVSLPKACSYDEGVSSKFA 60
          MASTLIKQSSILKTLTGGLRFFASKELISSIVGSDIVSAAPDVSLPKACSYDEGVSSKFA
Sbjct: 1  MASTLIKQSSILKTLTGGLRFFASKELISSIVGSDIVSAAPDVSLPKACSYDEGVSSKFA 60

Query: 61 TTPLHDIFKGKKVVIFGIP 80
          TTPLHDIFKGKKVVIFGIP
Sbjct: 61 TTPLHDIFKGKKVVIFGIP 79

[Close]

BLAST of Spo03560.1 vs. UniProtKB/TrEMBL
Match: A0A0J8B8Y7_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g123970 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 8.400e-23
Identity = 58/78 (74.36%), Postives = 68/78 (87.18%), Query Frame = 1


		  
Query: 2  ASTLIKQSSILKTLTGGLRFFASKELISSIVGSDIVSAAPDVSLPKACSYDEGVSSKFAT 61
          +S +IK+SS+LK+LTGGLR  AS+   S  VGSDIVSAAPD+SL KA +YDEGVSSKF+T
Sbjct: 3  SSMVIKRSSVLKSLTGGLRVAASRAYASVAVGSDIVSAAPDISLQKARTYDEGVSSKFST 62

Query: 62 TPLHDIFKGKKVVIFGIP 80
          TPLHDIFKGKKVVIFG+P
Sbjct: 63 TPLHDIFKGKKVVIFGLP 80

[Close]

BLAST of Spo03560.1 vs. UniProtKB/TrEMBL
Match: I0CC96_9CARY (Type II peroxiredoxin OS=Tamarix hispida GN=Prx4 PE=2 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 4.500e-16
Identity = 50/77 (64.94%), Postives = 61/77 (79.22%), Query Frame = 1


		  
Query: 3  STLIKQSSILKTLTGGLRFFASKELISSIVGSDIVSAAPDVSLPKACSYDEGVSSKFATT 62
          S L+K+SS +  + G LR  AS+   S  VGSDIVSAAPDV+L KA S+DEGVSSKF+TT
Sbjct: 2  SALLKRSSSM-AIIGSLRAAASRAYASIAVGSDIVSAAPDVALQKARSWDEGVSSKFSTT 61

Query: 63 PLHDIFKGKKVVIFGIP 80
          PL D+FKG+KVVIFG+P
Sbjct: 62 PLSDLFKGRKVVIFGLP 77

[Close]

BLAST of Spo03560.1 vs. UniProtKB/TrEMBL
Match: B9RTW9_RICCO (Peroxiredoxin, putative OS=Ricinus communis GN=RCOM_0913560 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 1.300e-15
Identity = 52/82 (63.41%), Postives = 63/82 (76.83%), Query Frame = 1


		  
Query: 1  MASTLIKQ--SSILKTLTGGLRFFASKELISSI-VGSDIVSAAPDVSLPKACSYDEGVSS 60
          MAS +++Q  SS LK++   LR   S    + + VG+DIVSAAPDVSL KA S+DEGVSS
Sbjct: 1  MASAILRQTRSSALKSMFDNLRMGGSSMSYAKLAVGTDIVSAAPDVSLQKARSWDEGVSS 60

Query: 61 KFATTPLHDIFKGKKVVIFGIP 80
          KF+TTPL DIFKGKKVVIFG+P
Sbjct: 61 KFSTTPLKDIFKGKKVVIFGLP 82

[Close]

BLAST of Spo03560.1 vs. UniProtKB/TrEMBL
Match: A0A059D204_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B01112 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 2.900e-15
Identity = 51/79 (64.56%), Postives = 60/79 (75.95%), Query Frame = 1


		  
Query: 1  MASTLIKQSSILKTLTGGLRFFASKELISSIVGSDIVSAAPDVSLPKACSYDEGVSSKFA 60
          MAS L K+SS   ++ GGL   A++   S  VG DIVSAAP VSL KA S+DEGVSSKFA
Sbjct: 1  MASLLAKRSS--SSVLGGLWTGAARTYASVAVGGDIVSAAPGVSLQKARSWDEGVSSKFA 60

Query: 61 TTPLHDIFKGKKVVIFGIP 80
          TTP+ DIF+GKKVVIFG+P
Sbjct: 61 TTPVKDIFEGKKVVIFGLP 77

[Close]

BLAST of Spo03560.1 vs. ExPASy Swiss-Prot
Match: PRX2F_ORYSJ (Peroxiredoxin-2F, mitochondrial OS=Oryza sativa subsp. japonica GN=PRXIIF PE=2 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 7.100e-15
Identity = 44/79 (55.70%), Postives = 58/79 (73.42%), Query Frame = 1


		  
Query: 1  MASTLIKQSSILKTLTGGLRFFASKELISSIVGSDIVSAAPDVSLPKACSYDEGVSSKFA 60
          MAS L++++++  +       +AS+ L S   GSDIVSAAP VSL KA S+DEGV++ F+
Sbjct: 1  MASALLRKATVGGSAAAAAARWASRGLASVGSGSDIVSAAPGVSLQKARSWDEGVATNFS 60

Query: 61 TTPLHDIFKGKKVVIFGIP 80
          TTPL DIF GKKVVIFG+P
Sbjct: 61 TTPLKDIFHGKKVVIFGLP 79

[Close]

BLAST of Spo03560.1 vs. ExPASy Swiss-Prot
Match: PRX2F_ARATH (Peroxiredoxin-2F, mitochondrial OS=Arabidopsis thaliana GN=PRXIIF PE=1 SV=2)

HSP 1 Score: 78.2 bits (191), Expect = 4.600e-14
Identity = 44/80 (55.00%), Postives = 54/80 (67.50%), Query Frame = 1


		  
Query: 1  MASTLIKQSSILKTLTGGLRFFASKELISSIV-GSDIVSAAPDVSLPKACSYDEGVSSKF 60
          M+   ++  S L++     R   S    S +  G+DI SAAP VSL KA S+DEGVSSKF
Sbjct: 3  MSILKLRNLSALRSAANSARIGVSSRGFSKLAEGTDITSAAPGVSLQKARSWDEGVSSKF 62

Query: 61 ATTPLHDIFKGKKVVIFGIP 80
          +TTPL DIFKGKKVVIFG+P
Sbjct: 63 STTPLSDIFKGKKVVIFGLP 82

[Close]

BLAST of Spo03560.1 vs. TAIR (Arabidopsis)
Match: AT3G06050.1 (peroxiredoxin IIF)

HSP 1 Score: 78.2 bits (191), Expect = 2.600e-15
Identity = 44/80 (55.00%), Postives = 54/80 (67.50%), Query Frame = 1


		  
Query: 1  MASTLIKQSSILKTLTGGLRFFASKELISSIV-GSDIVSAAPDVSLPKACSYDEGVSSKF 60
          M+   ++  S L++     R   S    S +  G+DI SAAP VSL KA S+DEGVSSKF
Sbjct: 3  MSILKLRNLSALRSAANSARIGVSSRGFSKLAEGTDITSAAPGVSLQKARSWDEGVSSKF 62

Query: 61 ATTPLHDIFKGKKVVIFGIP 80
          +TTPL DIFKGKKVVIFG+P
Sbjct: 63 STTPLSDIFKGKKVVIFGLP 82

The following BLAST results are available for this feature:

BLAST of Spo03560.1 vs. NCBI nr
BLAST of Spo03560.1 vs. UniProtKB/TrEMBL
BLAST of Spo03560.1 vs. ExPASy Swiss-Prot
BLAST of Spo03560.1 vs. TAIR (Arabidopsis)

BLAST of Spo03560.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902197147\|gb\|KNA13340.1\|	4.0e-34	100.	hypothetical protein SOVF_1178...	[more]
gi\|731366824\|ref\|XP_010695279.1\|	1.2e-22	74.3	PREDICTED: peroxiredoxin-2F, m...	[more]
gi\|731366826\|ref\|XP_010695280.1\|	1.2e-22	74.3	PREDICTED: peroxiredoxin-2F, m...	[more]
gi\|719972652\|ref\|XP_010278123.1\|	1.3e-16	62.9	PREDICTED: peroxiredoxin-2F, m...	[more]
gi\|384236168\|gb\|AFH74409.1\|	6.4e-16	64.9	type II peroxiredoxin [Tamarix...	[more]

BLAST of Spo03560.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9R1E4_SPIOL	2.8e-34	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8B8Y7_BETVU	8.4e-23	74.3	Uncharacterized protein OS=Bet...	[more]
I0CC96_9CARY	4.5e-16	64.9	Type II peroxiredoxin OS=Tamar...	[more]
B9RTW9_RICCO	1.3e-15	63.4	Peroxiredoxin, putative OS=Ric...	[more]
A0A059D204_EUCGR	2.9e-15	64.5	Uncharacterized protein OS=Euc...	[more]

BLAST of Spo03560.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 2


Match Name	E-value	Identity	Description
PRX2F_ORYSJ	7.1e-15	55.7	Peroxiredoxin-2F, mitochondria...	[more]
PRX2F_ARATH	4.6e-14	55.0	Peroxiredoxin-2F, mitochondria...	[more]

BLAST of Spo03560.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1


Match Name	E-value	Identity	Description
AT3G06050.1	2.6e-15	55.0	peroxiredoxin IIF	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012336	Thioredoxin-like fold	GENE3D	3.40.30.10		coord: 39..79 score: 9.
None	No IPR available	PANTHER	PTHR10430	PEROXIREDOXIN	coord: 32..79 score: 1.4
None	No IPR available	PANTHER	PTHR10430:SF7	PEROXIREDOXIN-2F, MITOCHONDRIAL	coord: 32..79 score: 1.4

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009987	cellular process
biological_process	GO:0006091	generation of precursor metabolites and energy
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0006950	response to stress
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0016209	antioxidant activity
molecular_function	GO:0016684	oxidoreductase activity, acting on peroxide as acceptor