Spo03757.1 (mRNA)

Overview
NameSpo03757.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
Locationchr3 : 87891203 .. 87891651 (+)
Sequence length370
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TCAACAGTACAAGTACAACACTATATCAGGCTTCTTCTGCCAAAAAAAGTTTCTTCACACAAGTACAAAATTCATTCAAATGTCTTCTGCAACAGCGAACCCATCGCTCTCTTCTCCTGCACTTTCTCCTTCCTATTTCCCTTCCCATCACTCTCTCCTTCGCCGCCATTTTTCTCTCTCCGTTTCTTCGTTATCATCGAACAAGTTCACCGCTGGTCTCAGACTCGTCTCACTTTGCTGTCAATCTCCTAATCTTGGTGCCATTTCGACTGTTTCTGCCATGTCAGATTCTTCATCTTCGCCTTCACCTTCACCTTCGTCTGCCATTGATTTTCTGACATTGTGTCATAGCCTCAAGGTACTGATCCTACATTGCCTTTTTTGTTTCTTCCAATTTCACTTTTGTTTGCTTTCTGTTTATAAATTAATTGTTCTAGACCTATAATTAG

mRNA sequence

TCAACAGTACAAGTACAACACTATATCAGGCTTCTTCTGCCAAAAAAAGTTTCTTCACACAAGTACAAAATTCATTCAAATGTCTTCTGCAACAGCGAACCCATCGCTCTCTTCTCCTGCACTTTCTCCTTCCTATTTCCCTTCCCATCACTCTCTCCTTCGCCGCCATTTTTCTCTCTCCGTTTCTTCGTTATCATCGAACAAGTTCACCGCTGGTCTCAGACTCGTCTCACTTTGCTGTCAATCTCCTAATCTTGGTGCCATTTCGACTGTTTCTGCCATGTCAGATTCTTCATCTTCGCCTTCACCTTCACCTTCGTCTGCCATTGATTTTCTGACATTGTGTCATAGCCTCAAGACCTATAATTAG

Coding sequence (CDS)

ATGTCTTCTGCAACAGCGAACCCATCGCTCTCTTCTCCTGCACTTTCTCCTTCCTATTTCCCTTCCCATCACTCTCTCCTTCGCCGCCATTTTTCTCTCTCCGTTTCTTCGTTATCATCGAACAAGTTCACCGCTGGTCTCAGACTCGTCTCACTTTGCTGTCAATCTCCTAATCTTGGTGCCATTTCGACTGTTTCTGCCATGTCAGATTCTTCATCTTCGCCTTCACCTTCACCTTCGTCTGCCATTGATTTTCTGACATTGTGTCATAGCCTCAAGACCTATAATTAG

Protein sequence

MSSATANPSLSSPALSPSYFPSHHSLLRRHFSLSVSSLSSNKFTAGLRLVSLCCQSPNLGAISTVSAMSDSSSSPSPSPSSAIDFLTLCHSLKTYN
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo03757Spo03757gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo03757.1Spo03757.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo03757.1.exon.1Spo03757.1.exon.1exon
Spo03757.1.exon.2Spo03757.1.exon.2exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo03757.1.utr5p.1Spo03757.1.utr5p.1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo03757.1.CDS.1Spo03757.1.CDS.1CDS
Spo03757.1.CDS.2Spo03757.1.CDS.2CDS


Homology
[Close]
BLAST of Spo03757.1 vs. NCBI nr
Match: gi|902187999|gb|KNA11037.1| (hypothetical protein SOVF_138840, partial [Spinacia oleracea])

HSP 1 Score: 171.4 bits (433), Expect = 7.700e-40
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 1 

		  

Query: 1  MSSATANPSLSSPALSPSYFPSHHSLLRRHFSLSVSSLSSNKFTAGLRLVSLCCQSPNLG 60
          MSSATANPSLSSPALSPSYFPSHHSLLRRHFSLSVSSLSSNKFTAGLRLVSLCCQSPNLG
Sbjct: 1  MSSATANPSLSSPALSPSYFPSHHSLLRRHFSLSVSSLSSNKFTAGLRLVSLCCQSPNLG 60

Query: 61 AISTVSAMSDSSSSPSPSPSSAIDFLTLCHSLK 94
          AISTVSAMSDSSSSPSPSPSSAIDFLTLCHSLK
Sbjct: 61 AISTVSAMSDSSSSPSPSPSSAIDFLTLCHSLK 93
[Close]
BLAST of Spo03757.1 vs. NCBI nr
Match: gi|731340376|ref|XP_010681364.1| (PREDICTED: HD domain-containing protein 2 homolog [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 81.6 bits (200), Expect = 8.000e-13
Identity = 59/94 (62.77%), Postives = 61/94 (64.89%), Query Frame = 1 

		  

Query: 1  MSSATANPSLSSPALSPSYFPSHHSLLRRHFSLSVSSLSSNKFTAGLRLVSLCCQSPNLG 60
          M S+T NPSLSSPA S       H  L    S S+SS SSN     LRLVS CCQSPNL 
Sbjct: 1  MWSSTTNPSLSSPASSFRRPHFCHPSLSISLSSSLSSFSSNNLIPTLRLVSFCCQSPNLT 60

Query: 61 AISTVSAMSDSSSSPSPSPSSAIDFLTLCHSLKT 95
             TVSAMSD SSS S S SSAIDFLTLCH LKT
Sbjct: 61 TNLTVSAMSDPSSS-SSSSSSAIDFLTLCHRLKT 93
[Close]
BLAST of Spo03757.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QUS0_SPIOL (Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_138840 PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 5.300e-40
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 1 

		  

Query: 1  MSSATANPSLSSPALSPSYFPSHHSLLRRHFSLSVSSLSSNKFTAGLRLVSLCCQSPNLG 60
          MSSATANPSLSSPALSPSYFPSHHSLLRRHFSLSVSSLSSNKFTAGLRLVSLCCQSPNLG
Sbjct: 1  MSSATANPSLSSPALSPSYFPSHHSLLRRHFSLSVSSLSSNKFTAGLRLVSLCCQSPNLG 60

Query: 61 AISTVSAMSDSSSSPSPSPSSAIDFLTLCHSLK 94
          AISTVSAMSDSSSSPSPSPSSAIDFLTLCHSLK
Sbjct: 61 AISTVSAMSDSSSSPSPSPSSAIDFLTLCHSLK 93
[Close]
BLAST of Spo03757.1 vs. UniProtKB/TrEMBL
Match: A0A0J8EYU3_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g140830 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 5.600e-13
Identity = 59/94 (62.77%), Postives = 61/94 (64.89%), Query Frame = 1 

		  

Query: 1  MSSATANPSLSSPALSPSYFPSHHSLLRRHFSLSVSSLSSNKFTAGLRLVSLCCQSPNLG 60
          M S+T NPSLSSPA S       H  L    S S+SS SSN     LRLVS CCQSPNL 
Sbjct: 1  MWSSTTNPSLSSPASSFRRPHFCHPSLSISLSSSLSSFSSNNLIPTLRLVSFCCQSPNLT 60

Query: 61 AISTVSAMSDSSSSPSPSPSSAIDFLTLCHSLKT 95
             TVSAMSD SSS S S SSAIDFLTLCH LKT
Sbjct: 61 TNLTVSAMSDPSSS-SSSSSSAIDFLTLCHRLKT 93
The following BLAST results are available for this feature:
BLAST of Spo03757.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 2
Match NameE-valueIdentityDescription
gi|902187999|gb|KNA11037.1|7.7e-40100.hypothetical protein SOVF_1388... [more]
gi|731340376|ref|XP_010681364.1|8.0e-1362.7PREDICTED: HD domain-containin... [more]
back to top
BLAST of Spo03757.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 2
Match NameE-valueIdentityDescription
A0A0K9QUS0_SPIOL5.3e-40100.Uncharacterized protein (Fragm... [more]
A0A0J8EYU3_BETVU5.6e-1362.7Uncharacterized protein OS=Bet... [more]
back to top
BLAST of Spo03757.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Spo03757.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
back to top