Spo03858.1 (mRNA)

Overview
NameSpo03858.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
Locationchr5 : 7341125 .. 7341827 (+)
Sequence length624
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGAAATTACAACCAAATTTGGCAGCAAAAGCTTTACTAATAATCTTATTCCTATTAGCTAGTCTTGCACCAGATTTTACATTAGCTACACCTACTAACGGTAAATTCCTTTCCCCCTATTGGTATTATTACACTAATTATTTAATTATCTGATGATGTTTGTTTCTATCTTGAATTAGTTGGTTTGCAAGATGCATCATCAGGGTTCTCTTCCACCAATTACAAGGTAAGTAATGGTATCAACAACATAGAAGTAGAGAAGAGAGAAAGAAGGAGAAGAATAAGAGCAGCTCCGCCACCGCCGAAGGCGGGTAAGGAGGTTAGTCCAGTTGCGCCACCACCAATACTACGACCACCACCACCACCACCACCATCAACAGGATGTACACCGGGAGTTCCACCTCCCCCTCCTATTTCCTACCCCCCTCGTCATCTCTGATCTAATAGAGATAAAGTTAATTGGTGTAATTAGTTGCTTTAATTTGGCACAATTACATGTAACATGTTTAACAGTTTAATGTTGAGTTATTGAAAGAGGAAGCTGATAAGGCTCTTGTTATCTCTTGCTATGCTCTATTTTTAAACTTGTGAAAGTAGAGAATTTGAACATAATATACATCCTCCGTTCTGCAAATATCGCACCATTTTTTTTACACTATTCACACTACGACTTTGGCTATTTTTTGTGTTTCGTACTCCG

mRNA sequence

ATGCAGAAATTACAACCAAATTTGGCAGCAAAAGCTTTACTAATAATCTTATTCCTATTAGCTAGTCTTGCACCAGATTTTACATTAGCTACACCTACTAACGTTGGTTTGCAAGATGCATCATCAGGGTTCTCTTCCACCAATTACAAGGTAAGTAATGGTATCAACAACATAGAAGTAGAGAAGAGAGAAAGAAGGAGAAGAATAAGAGCAGCTCCGCCACCGCCGAAGGCGGGTAAGGAGGTTAGTCCAGTTGCGCCACCACCAATACTACGACCACCACCACCACCACCACCATCAACAGGATGTACACCGGGAGTTCCACCTCCCCCTCCTATTTCCTACCCCCCTCGTCATCTCTGATCTAATAGAGATAAAGTTAATTGGTGTAATTAGTTGCTTTAATTTGGCACAATTACATGTAACATGTTTAACAGTTTAATGTTGAGTTATTGAAAGAGGAAGCTGATAAGGCTCTTGTTATCTCTTGCTATGCTCTATTTTTAAACTTGTGAAAGTAGAGAATTTGAACATAATATACATCCTCCGTTCTGCAAATATCGCACCATTTTTTTTACACTATTCACACTACGACTTTGGCTATTTTTTGTGTTTCGTACTCCG

Coding sequence (CDS)

ATGCAGAAATTACAACCAAATTTGGCAGCAAAAGCTTTACTAATAATCTTATTCCTATTAGCTAGTCTTGCACCAGATTTTACATTAGCTACACCTACTAACGTTGGTTTGCAAGATGCATCATCAGGGTTCTCTTCCACCAATTACAAGGTAAGTAATGGTATCAACAACATAGAAGTAGAGAAGAGAGAAAGAAGGAGAAGAATAAGAGCAGCTCCGCCACCGCCGAAGGCGGGTAAGGAGGTTAGTCCAGTTGCGCCACCACCAATACTACGACCACCACCACCACCACCACCATCAACAGGATGTACACCGGGAGTTCCACCTCCCCCTCCTATTTCCTACCCCCCTCGTCATCTCTGA

Protein sequence

MQKLQPNLAAKALLIILFLLASLAPDFTLATPTNVGLQDASSGFSSTNYKVSNGINNIEVEKRERRRRIRAAPPPPKAGKEVSPVAPPPILRPPPPPPPSTGCTPGVPPPPPISYPPRHL
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo03858Spo03858gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo03858.1Spo03858.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo03858.1.exon.1Spo03858.1.exon.1exon
Spo03858.1.exon.2Spo03858.1.exon.2exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo03858.1.CDS.1Spo03858.1.CDS.1CDS
Spo03858.1.CDS.2Spo03858.1.CDS.2CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo03858.1.utr3p.1Spo03858.1.utr3p.1three_prime_UTR


Homology
[Close]
BLAST of Spo03858.1 vs. NCBI nr
Match: gi|902230343|gb|KNA21828.1| (hypothetical protein SOVF_040040 [Spinacia oleracea])

HSP 1 Score: 218.8 bits (556), Expect = 5.200e-54
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 1 

		  

Query: 1   MQKLQPNLAAKALLIILFLLASLAPDFTLATPTNVGLQDASSGFSSTNYKVSNGINNIEV 60
           MQKLQPNLAAKALLIILFLLASLAPDFTLATPTNVGLQDASSGFSSTNYKVSNGINNIEV
Sbjct: 1   MQKLQPNLAAKALLIILFLLASLAPDFTLATPTNVGLQDASSGFSSTNYKVSNGINNIEV 60

Query: 61  EKRERRRRIRAAPPPPKAGKEVSPVAPPPILRPPPPPPPSTGCTPGVPPPPPISYPPRHL 120
           EKRERRRRIRAAPPPPKAGKEVSPVAPPPILRPPPPPPPSTGCTPGVPPPPPISYPPRHL
Sbjct: 61  EKRERRRRIRAAPPPPKAGKEVSPVAPPPILRPPPPPPPSTGCTPGVPPPPPISYPPRHL 120
[Close]
BLAST of Spo03858.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RQS2_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_040040 PE=4 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 3.600e-54
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 1 

		  

Query: 1   MQKLQPNLAAKALLIILFLLASLAPDFTLATPTNVGLQDASSGFSSTNYKVSNGINNIEV 60
           MQKLQPNLAAKALLIILFLLASLAPDFTLATPTNVGLQDASSGFSSTNYKVSNGINNIEV
Sbjct: 1   MQKLQPNLAAKALLIILFLLASLAPDFTLATPTNVGLQDASSGFSSTNYKVSNGINNIEV 60

Query: 61  EKRERRRRIRAAPPPPKAGKEVSPVAPPPILRPPPPPPPSTGCTPGVPPPPPISYPPRHL 120
           EKRERRRRIRAAPPPPKAGKEVSPVAPPPILRPPPPPPPSTGCTPGVPPPPPISYPPRHL
Sbjct: 61  EKRERRRRIRAAPPPPKAGKEVSPVAPPPILRPPPPPPPSTGCTPGVPPPPPISYPPRHL 120
The following BLAST results are available for this feature:
BLAST of Spo03858.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 1
Match NameE-valueIdentityDescription
gi|902230343|gb|KNA21828.1|5.2e-54100.hypothetical protein SOVF_0400... [more]
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BLAST of Spo03858.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0K9RQS2_SPIOL3.6e-54100.Uncharacterized protein OS=Spi... [more]
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BLAST of Spo03858.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo03858.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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