Spo03987.1 (mRNA) | SpinachBase

Overview


Name	Spo03987.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	SecE/sec61-gamma subunit of protein translocation complex protein
Location	chr1 : 47294319 .. 47298013 (-)
Sequence length	1077

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCATTGTGCCACATTTAAGGAACGGAGGAATTAAGTACAAATTACCATTTCTACCCTTATATCACATCCCCTCCTCAGTCCCTCACTCAGTTAACTCCACCCAGACCACAACCATAACGACCAGGCCCACCCTACCCCCACTTAAATTTCCCGGCCACCACCACTACCACAGCCACTCACCCGAAGCCCTAAATTAGGAAATTGAATATGATTATACTTTATTAACCTAAATTAGGTTTTCAATTAGTAACGATTAACTGTTTGTTGTTGCTATTTCCAGGGAATTTCAATTAATTTGGTTTGTTGCTGATAGAAATGGCTACTTTTTCTGGGTTGTCGTCAAATTCTTCAGGTACCAACCTCATTTACTCTACAAATCACTGAAATTTCTGAATATTGTGAATAGTTGTATGGAAGACATTGAAAAATTTCTCACTGCGCTTTTTATTTAATGTAGTTTTGGGTTATAATAATGGCAACCCAATGCTTTCATTTCGATATCGAATGTCGATTGAAGCCAACACTAGAGGCTTGGTTACTTGTAAATTTGTACCAAAATGGGTAAAATATTTGTCTAATTGTTCTATTGATTATGATTTCTCTAAGCATATTAGTGTTTTGTATTGATTTTTTAAATTGCCTATTTTTATATATTGCTAGGATTTAAGGTCAGAGATCCATTATTCTCACAAGAAGCAGGTTCAACCTCGGTTTTCGATGTCTCGGGGAGGAAATTATGGTTTAAAGTTTGATGATGAGTGTGCTGAGGACCCATTTTGGCTACGTTTCTCTAAGGAAACAATCAGGTATTAAGATTAGAAGCAATTGTGTGGATTCTGGTTTCACATTGGGGTACTAGTAGCCTGTAATTGTACTGAGTTGTTTGTTGTGCCATATTCTTTTCAGGGGTTTGAAATCATTGGTTAGGTTCCTTGTTCAACAACCTGGGCAGCTGAAGTACATAGAATGGCCGAGTTTTAACGACACGGTACAATCCTTGCCTAAATAATGGATACATCTTTGTTTATTGCATTTTATTTGCTTCTGTAGAATAGTTTAGGCCTTGTTCAGTTTGAACAGATACTTGTCTGAATTGTGGTAGTATGATTGCCTATGTTATTTAACTTTAAACAGAAATCGTCGAATAAGAATATGTCAATCATCAGGTCATTGTGCGAACAAGATGCATACTACTTCTGTTTTAACATAGTCTAGTCTCTTAGTACTCGTAAATGAAAGTCCATAGATGAATTGATGGAGTTTCTAGGACATCGTATCTCTTGAAACCTTTGGCAAAGTTTCTATGTAATTTTGCTATATATGGAGCATACTACAATTAGATGCTGCAGTTGAATGATTAGACCTTGCTGGGGTTGAACTTGTTGTAAAATTTGTTTGAATGTGTTCTTGAAATATATTGACAAAAGACTTAGAATGCAAACTTGGGAGCTCTAATAACTTGGTTTTTTTTTTGGGTGCAAACCTACAAAGTTTTGCTATTTATCTCATTGGCGCTTTTAGTGTAATTTCCCATGGAAACTATCCTGGTAGACTGGTAGTTTGTTTGAGATCTACAGGACATCATCTCATCATATTGCCTTAGACTCGTGAGTCTAAGAACAGCACTGTAAGTGCCTTATTGATTATATTTCATTTCTTTCTTCCAAACCAAGCCCTTATCGAAGAGCATGATTTCAATTTAATTGTAACAACTTGATGTGTCTGGAACATGTCGATTAGGTATAGTAACAACGTTGATTTGGTTACAGAGATGCATAATATTTATACGGAGTACATAACAGTCTTGTGTATTTTCTTTTTTCTCCCCTCTTCTCTCCCAATAATGGCGCTGGGCCTGGACATGCTTGCAATATTATTTGGGTTATTTTCTATGATGTTTTAAATCCTTTCTGTTGTTAGAAAGCATTATTGTATGACTCTGACTGAACAAAGGGACCCTAGATTGCCTATCAAAAAACCTGTATGTTTAATGCTAAGTGTAAGGGTAGTTTGGGTATTATATTAAAGGTGAGGGCATTTGGTGAATTTTGTGAAAATTGAGGGGCATTTCATGACAAATCCGTATTTTTTTAATAGTTTGTAAAATGACATCCATTTTGCTATACTTTGAACATGTTTAAATTTTAGTAATCATTTACTTGATGAAAGAGTGGAAAATGGGTGAGGAATTGATGAGTGTTTTTTTGGGGTGAGGGAACCAGGAGAATGCAAATCACTACTCTGTTTAGCTTTTTGGTGAACGCCTCAAGTTATTTGATGAAATTAGTCTGACCAAGATAATAAGGAGAAAAAAATTTAGAAATAAAAGAGATCAAATATGTACGAGTTTTCCACAAGGGCAATACAAATTAGTGAAATTACAAATGGGGAAATATGATAGCTCTGCTAATGGGGCTAGGTTATGACTTTTGAGTGGGGGGTTTGGAGAGAGGATATACTAAAATCATGTAAATGAATTAGAATTACTTCCATCGACTCAGATATCATACAGGATATACTGTTCTGTTTATTTAATCGGTCTTCACTTACTGGTTACATAAAGCAGTTCTAGATCAGAAGATAGTGACCTCGAGTGTTTGGTTTAGAGATCTGTGGAACTTTACTGTGTACTGTCAATTAGTTGTAGCTCAGACGCCTAAGGATTCAAGAAGATTAAGTTGAGTCGGCTGTAGGTGGTGAAGAGCAGGTTGGTTTTGAGTCAGCTGGTGGTGGAGCACCTAGCTGAAAATAGCATGGTTTAAAAGTCAAATTGATTTGATGCTCCTGGTTCACTTGAATAGTTAAATCTGCCGAAGAAGTTGGGGTTTTGATTGATTTAAAACTTGGGCAGATTGAAGCTTAATACTAAAATCTGTGAAGTATTCACCTTAGTAACAACTAACAAGGTAGTTGATTTCTTTGCTTGCAGCTGATGGCTAATTCTGTTTAAGAAAACAGGTTTGTTTGATTGATTTATTGCATAGGCTGCCTTAGATGAAACTAATCTAGCCTTTGCTAAGGTCCAATTGGGTAACTTTGCCAGAGATTACACAAAGTAGTTTTGACAACAGGGTTAGGGGAGTAGAGGCAGAAGAAAGAATGTTTAGCACATTAATGCTGTGTGCCATAGAAAGCAGTAAAGTGGTGCATATAAAAAGTCCGAAACCTAACCTAGCCTGACATAACCTTTGGTGCCTGATGTATTGATTAAGAATTAAGATGCTTGATTGCTTGTTTGTGTCAAAAGCATGCGTTTTGTGAGGGGGAATCTAATAGTTTTCTCCTTTTGTTTTTGGTTGCAGCTGCGAACTGCCACCCTCACCCTTGTACTTGTAGCCGGGCTTATTGTTGCTTTGTCTTCAATTGATGCTGGACTTTCTTATGTGTTGGCACTACTTCTGCGAAAACCTGCATGACACAACCTGTTTTGGTCTCGGCTCTAGCTTTTCTGACAGACAACACTGATTTTACCAGTAGCGTCGACAGAATTTCATCTTTGGAGGCTCAACTTGATAGATTTAAGATCAGTGTACATTGTAAACTAGTCAACTAGGACAAAGGGCTTTGGTAAAAGTATGCTGTAAGTTTGATCTTGTCTATAACATAGTACTTTGTATTTCCTTACCATTAAAGTATGTTGATCATATAATTGTTTTACCATTAAATGGCAAGTAACTAAACATTTTCCGTTATAA

mRNA sequence

CCATTGTGCCACATTTAAGGAACGGAGGAATTAAGTACAAATTACCATTTCTACCCTTATATCACATCCCCTCCTCAGTCCCTCACTCAGTTAACTCCACCCAGACCACAACCATAACGACCAGGCCCACCCTACCCCCACTTAAATTTCCCGGCCACCACCACTACCACAGCCACTCACCCGAAGCCCTAAATTAGGAAATTGAATATGATTATACTTTATTAACCTAAATTAGGTTTTCAATTAGTAACGATTAACTGTTTGTTGTTGCTATTTCCAGGGAATTTCAATTAATTTGGTTTGTTGCTGATAGAAATGGCTACTTTTTCTGGGTTGTCGTCAAATTCTTCAGTTTTGGGTTATAATAATGGCAACCCAATGCTTTCATTTCGATATCGAATGTCGATTGAAGCCAACACTAGAGGCTTGGTTACTTGTAAATTTGTACCAAAATGGGATTTAAGGTCAGAGATCCATTATTCTCACAAGAAGCAGGTTCAACCTCGGTTTTCGATGTCTCGGGGAGGAAATTATGGTTTAAAGTTTGATGATGAGTGTGCTGAGGACCCATTTTGGCTACGTTTCTCTAAGGAAACAATCAGGGGTTTGAAATCATTGGTTAGGTTCCTTGTTCAACAACCTGGGCAGCTGAAGTACATAGAATGGCCGAGTTTTAACGACACGCTGCGAACTGCCACCCTCACCCTTGTACTTGTAGCCGGGCTTATTGTTGCTTTGTCTTCAATTGATGCTGGACTTTCTTATGTGTTGGCACTACTTCTGCGAAAACCTGCATGACACAACCTGTTTTGGTCTCGGCTCTAGCTTTTCTGACAGACAACACTGATTTTACCAGTAGCGTCGACAGAATTTCATCTTTGGAGGCTCAACTTGATAGATTTAAGATCAGTGTACATTGTAAACTAGTCAACTAGGACAAAGGGCTTTGGTAAAAGTATGCTGTAAGTTTGATCTTGTCTATAACATAGTACTTTGTATTTCCTTACCATTAAAGTATGTTGATCATATAATTGTTTTACCATTAAATGGCAAGTAACTAAACATTTTCCGTTATAA

Coding sequence (CDS)

ATGGCTACTTTTTCTGGGTTGTCGTCAAATTCTTCAGTTTTGGGTTATAATAATGGCAACCCAATGCTTTCATTTCGATATCGAATGTCGATTGAAGCCAACACTAGAGGCTTGGTTACTTGTAAATTTGTACCAAAATGGGATTTAAGGTCAGAGATCCATTATTCTCACAAGAAGCAGGTTCAACCTCGGTTTTCGATGTCTCGGGGAGGAAATTATGGTTTAAAGTTTGATGATGAGTGTGCTGAGGACCCATTTTGGCTACGTTTCTCTAAGGAAACAATCAGGGGTTTGAAATCATTGGTTAGGTTCCTTGTTCAACAACCTGGGCAGCTGAAGTACATAGAATGGCCGAGTTTTAACGACACGCTGCGAACTGCCACCCTCACCCTTGTACTTGTAGCCGGGCTTATTGTTGCTTTGTCTTCAATTGATGCTGGACTTTCTTATGTGTTGGCACTACTTCTGCGAAAACCTGCATGA

Protein sequence

MATFSGLSSNSSVLGYNNGNPMLSFRYRMSIEANTRGLVTCKFVPKWDLRSEIHYSHKKQVQPRFSMSRGGNYGLKFDDECAEDPFWLRFSKETIRGLKSLVRFLVQQPGQLKYIEWPSFNDTLRTATLTLVLVAGLIVALSSIDAGLSYVLALLLRKPA

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo03987	Spo03987	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo03987.1	Spo03987.1-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo03987.1.utr5p.1	Spo03987.1.utr5p.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo03987.1.CDS.5	Spo03987.1.CDS.5	CDS
Spo03987.1.CDS.4	Spo03987.1.CDS.4	CDS
Spo03987.1.CDS.3	Spo03987.1.CDS.3	CDS
Spo03987.1.CDS.2	Spo03987.1.CDS.2	CDS
Spo03987.1.CDS.1	Spo03987.1.CDS.1	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo03987.1.utr3p.1	Spo03987.1.utr3p.1	three_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo03987.1.exon.5	Spo03987.1.exon.5	exon
Spo03987.1.exon.4	Spo03987.1.exon.4	exon
Spo03987.1.exon.3	Spo03987.1.exon.3	exon
Spo03987.1.exon.2	Spo03987.1.exon.2	exon
Spo03987.1.exon.1	Spo03987.1.exon.1	exon

Homology

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BLAST of Spo03987.1 vs. NCBI nr
Match: gi|902228858|gb|KNA21289.1| (hypothetical protein SOVF_044480 [Spinacia oleracea])

HSP 1 Score: 322.0 bits (824), Expect = 5.800e-85
Identity = 160/160 (100.00%), Postives = 160/160 (100.00%), Query Frame = 1

		  
Query: 1   MATFSGLSSNSSVLGYNNGNPMLSFRYRMSIEANTRGLVTCKFVPKWDLRSEIHYSHKKQ 60
           MATFSGLSSNSSVLGYNNGNPMLSFRYRMSIEANTRGLVTCKFVPKWDLRSEIHYSHKKQ
Sbjct: 1   MATFSGLSSNSSVLGYNNGNPMLSFRYRMSIEANTRGLVTCKFVPKWDLRSEIHYSHKKQ 60

Query: 61  VQPRFSMSRGGNYGLKFDDECAEDPFWLRFSKETIRGLKSLVRFLVQQPGQLKYIEWPSF 120
           VQPRFSMSRGGNYGLKFDDECAEDPFWLRFSKETIRGLKSLVRFLVQQPGQLKYIEWPSF
Sbjct: 61  VQPRFSMSRGGNYGLKFDDECAEDPFWLRFSKETIRGLKSLVRFLVQQPGQLKYIEWPSF 120

Query: 121 NDTLRTATLTLVLVAGLIVALSSIDAGLSYVLALLLRKPA 161
           NDTLRTATLTLVLVAGLIVALSSIDAGLSYVLALLLRKPA
Sbjct: 121 NDTLRTATLTLVLVAGLIVALSSIDAGLSYVLALLLRKPA 160

[Close]

BLAST of Spo03987.1 vs. NCBI nr
Match: gi|902203878|gb|KNA14718.1| (hypothetical protein SOVF_105000 [Spinacia oleracea])

HSP 1 Score: 292.0 bits (746), Expect = 6.500e-76
Identity = 145/160 (90.62%), Postives = 150/160 (93.75%), Query Frame = 1

		  
Query: 1   MATFSGLSSNSSVLGYNNGNPMLSFRYRMSIEANTRGLVTCKFVPKWDLRSEIHYSHKKQ 60
           MATFSG+ SNSSVLGYNNGNPMLSFR RMSIEANT GLVTCKFVPKWDLR+EIHYSHKKQ
Sbjct: 1   MATFSGMLSNSSVLGYNNGNPMLSFRNRMSIEANTGGLVTCKFVPKWDLRAEIHYSHKKQ 60

Query: 61  VQPRFSMSRGGNYGLKFDDECAEDPFWLRFSKETIRGLKSLVRFLVQQPGQLKYIEWPSF 120
           V+PRFSMSRGG YGLKFDDEC +DPFWL FSKETIRGLKSLV FLV QPGQLKYIEWPSF
Sbjct: 61  VRPRFSMSRGGKYGLKFDDECDDDPFWLHFSKETIRGLKSLVAFLVHQPGQLKYIEWPSF 120

Query: 121 NDTLRTATLTLVLVAGLIVALSSIDAGLSYVLALLLRKPA 161
            DTLRTATLTLVLVAGLIVALSSIDA LSYVLALLL+KPA
Sbjct: 121 KDTLRTATLTLVLVAGLIVALSSIDAALSYVLALLLQKPA 160

[Close]

BLAST of Spo03987.1 vs. NCBI nr
Match: gi|731357645|ref|XP_010690322.1| (PREDICTED: uncharacterized protein LOC104903888 isoform X2 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 222.6 bits (566), Expect = 4.800e-55
Identity = 114/160 (71.25%), Postives = 130/160 (81.25%), Query Frame = 1

		  
Query: 1   MATFSGLSSNSSVLGYNNGNPMLSFRYRMSIEANTRGLVTCKFVPKWDLRSEIHYSHKKQ 60
           MAT SGL SNSSVL   N NPMLSF Y MS EA T GL+T KFVPKW  R +I     + 
Sbjct: 62  MATVSGLLSNSSVLSLKNDNPMLSFGYSMSTEATTTGLITVKFVPKWKSRCKIRSLRMEW 121

Query: 61  VQPRFSMSRGGNYGLKFDDECAEDPFWLRFSKETIRGLKSLVRFLVQQPGQLKYIEWPSF 120
           V+P F+MSRGG+YGLKFD+E  EDPFW+ +SKETIRGLK+L+ FLVQQPGQLKYIEWPSF
Sbjct: 122 VRPLFAMSRGGSYGLKFDNEDDEDPFWVHYSKETIRGLKTLLAFLVQQPGQLKYIEWPSF 181

Query: 121 NDTLRTATLTLVLVAGLIVALSSIDAGLSYVLALLLRKPA 161
            DTL TA+LTLVLVA LIVALSS+D+ LS+VLALL+RKPA
Sbjct: 182 QDTLWTASLTLVLVAALIVALSSLDSALSFVLALLVRKPA 221

[Close]

BLAST of Spo03987.1 vs. NCBI nr
Match: gi|870849088|gb|KMT01351.1| (hypothetical protein BVRB_9g213650 isoform B [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 222.6 bits (566), Expect = 4.800e-55
Identity = 114/160 (71.25%), Postives = 130/160 (81.25%), Query Frame = 1

		  
Query: 1   MATFSGLSSNSSVLGYNNGNPMLSFRYRMSIEANTRGLVTCKFVPKWDLRSEIHYSHKKQ 60
           MAT SGL SNSSVL   N NPMLSF Y MS EA T GL+T KFVPKW  R +I     + 
Sbjct: 1   MATVSGLLSNSSVLSLKNDNPMLSFGYSMSTEATTTGLITVKFVPKWKSRCKIRSLRMEW 60

Query: 61  VQPRFSMSRGGNYGLKFDDECAEDPFWLRFSKETIRGLKSLVRFLVQQPGQLKYIEWPSF 120
           V+P F+MSRGG+YGLKFD+E  EDPFW+ +SKETIRGLK+L+ FLVQQPGQLKYIEWPSF
Sbjct: 61  VRPLFAMSRGGSYGLKFDNEDDEDPFWVHYSKETIRGLKTLLAFLVQQPGQLKYIEWPSF 120

Query: 121 NDTLRTATLTLVLVAGLIVALSSIDAGLSYVLALLLRKPA 161
            DTL TA+LTLVLVA LIVALSS+D+ LS+VLALL+RKPA
Sbjct: 121 QDTLWTASLTLVLVAALIVALSSLDSALSFVLALLVRKPA 160

[Close]

BLAST of Spo03987.1 vs. NCBI nr
Match: gi|731357643|ref|XP_010690320.1| (PREDICTED: uncharacterized protein LOC104903888 isoform X1 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 222.6 bits (566), Expect = 4.800e-55
Identity = 114/160 (71.25%), Postives = 130/160 (81.25%), Query Frame = 1

		  
Query: 1   MATFSGLSSNSSVLGYNNGNPMLSFRYRMSIEANTRGLVTCKFVPKWDLRSEIHYSHKKQ 60
           MAT SGL SNSSVL   N NPMLSF Y MS EA T GL+T KFVPKW  R +I     + 
Sbjct: 70  MATVSGLLSNSSVLSLKNDNPMLSFGYSMSTEATTTGLITVKFVPKWKSRCKIRSLRMEW 129

Query: 61  VQPRFSMSRGGNYGLKFDDECAEDPFWLRFSKETIRGLKSLVRFLVQQPGQLKYIEWPSF 120
           V+P F+MSRGG+YGLKFD+E  EDPFW+ +SKETIRGLK+L+ FLVQQPGQLKYIEWPSF
Sbjct: 130 VRPLFAMSRGGSYGLKFDNEDDEDPFWVHYSKETIRGLKTLLAFLVQQPGQLKYIEWPSF 189

Query: 121 NDTLRTATLTLVLVAGLIVALSSIDAGLSYVLALLLRKPA 161
            DTL TA+LTLVLVA LIVALSS+D+ LS+VLALL+RKPA
Sbjct: 190 QDTLWTASLTLVLVAALIVALSSLDSALSFVLALLVRKPA 229

[Close]

BLAST of Spo03987.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RQX4_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_044480 PE=3 SV=1)

HSP 1 Score: 322.0 bits (824), Expect = 4.100e-85
Identity = 160/160 (100.00%), Postives = 160/160 (100.00%), Query Frame = 1

		  
Query: 1   MATFSGLSSNSSVLGYNNGNPMLSFRYRMSIEANTRGLVTCKFVPKWDLRSEIHYSHKKQ 60
           MATFSGLSSNSSVLGYNNGNPMLSFRYRMSIEANTRGLVTCKFVPKWDLRSEIHYSHKKQ
Sbjct: 1   MATFSGLSSNSSVLGYNNGNPMLSFRYRMSIEANTRGLVTCKFVPKWDLRSEIHYSHKKQ 60

Query: 61  VQPRFSMSRGGNYGLKFDDECAEDPFWLRFSKETIRGLKSLVRFLVQQPGQLKYIEWPSF 120
           VQPRFSMSRGGNYGLKFDDECAEDPFWLRFSKETIRGLKSLVRFLVQQPGQLKYIEWPSF
Sbjct: 61  VQPRFSMSRGGNYGLKFDDECAEDPFWLRFSKETIRGLKSLVRFLVQQPGQLKYIEWPSF 120

Query: 121 NDTLRTATLTLVLVAGLIVALSSIDAGLSYVLALLLRKPA 161
           NDTLRTATLTLVLVAGLIVALSSIDAGLSYVLALLLRKPA
Sbjct: 121 NDTLRTATLTLVLVAGLIVALSSIDAGLSYVLALLLRKPA 160

[Close]

BLAST of Spo03987.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R5D4_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_105000 PE=3 SV=1)

HSP 1 Score: 292.0 bits (746), Expect = 4.500e-76
Identity = 145/160 (90.62%), Postives = 150/160 (93.75%), Query Frame = 1

		  
Query: 1   MATFSGLSSNSSVLGYNNGNPMLSFRYRMSIEANTRGLVTCKFVPKWDLRSEIHYSHKKQ 60
           MATFSG+ SNSSVLGYNNGNPMLSFR RMSIEANT GLVTCKFVPKWDLR+EIHYSHKKQ
Sbjct: 1   MATFSGMLSNSSVLGYNNGNPMLSFRNRMSIEANTGGLVTCKFVPKWDLRAEIHYSHKKQ 60

Query: 61  VQPRFSMSRGGNYGLKFDDECAEDPFWLRFSKETIRGLKSLVRFLVQQPGQLKYIEWPSF 120
           V+PRFSMSRGG YGLKFDDEC +DPFWL FSKETIRGLKSLV FLV QPGQLKYIEWPSF
Sbjct: 61  VRPRFSMSRGGKYGLKFDDECDDDPFWLHFSKETIRGLKSLVAFLVHQPGQLKYIEWPSF 120

Query: 121 NDTLRTATLTLVLVAGLIVALSSIDAGLSYVLALLLRKPA 161
            DTLRTATLTLVLVAGLIVALSSIDA LSYVLALLL+KPA
Sbjct: 121 KDTLRTATLTLVLVAGLIVALSSIDAALSYVLALLLQKPA 160

[Close]

BLAST of Spo03987.1 vs. UniProtKB/TrEMBL
Match: A0A0J8EEG3_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_9g213650 PE=4 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 3.400e-55
Identity = 114/160 (71.25%), Postives = 130/160 (81.25%), Query Frame = 1

		  
Query: 1   MATFSGLSSNSSVLGYNNGNPMLSFRYRMSIEANTRGLVTCKFVPKWDLRSEIHYSHKKQ 60
           MAT SGL SNSSVL   N NPMLSF Y MS EA T GL+T KFVPKW  R +I     + 
Sbjct: 1   MATVSGLLSNSSVLSLKNDNPMLSFGYSMSTEATTTGLITVKFVPKWKSRCKIRSLRMEW 60

Query: 61  VQPRFSMSRGGNYGLKFDDECAEDPFWLRFSKETIRGLKSLVRFLVQQPGQLKYIEWPSF 120
           V+P F+MSRGG+YGLKFD+E  EDPFW+ +SKETIRGLK+L+ FLVQQPGQLKYIEWPSF
Sbjct: 61  VRPLFAMSRGGSYGLKFDNEDDEDPFWVHYSKETIRGLKTLLAFLVQQPGQLKYIEWPSF 120

Query: 121 NDTLRTATLTLVLVAGLIVALSSIDAGLSYVLALLLRKPA 161
            DTL TA+LTLVLVA LIVALSS+D+ LS+VLALL+RKPA
Sbjct: 121 QDTLWTASLTLVLVAALIVALSSLDSALSFVLALLVRKPA 160

[Close]

BLAST of Spo03987.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BIT5_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_9g213650 PE=4 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 3.400e-55
Identity = 114/160 (71.25%), Postives = 130/160 (81.25%), Query Frame = 1

		  
Query: 1   MATFSGLSSNSSVLGYNNGNPMLSFRYRMSIEANTRGLVTCKFVPKWDLRSEIHYSHKKQ 60
           MAT SGL SNSSVL   N NPMLSF Y MS EA T GL+T KFVPKW  R +I     + 
Sbjct: 70  MATVSGLLSNSSVLSLKNDNPMLSFGYSMSTEATTTGLITVKFVPKWKSRCKIRSLRMEW 129

Query: 61  VQPRFSMSRGGNYGLKFDDECAEDPFWLRFSKETIRGLKSLVRFLVQQPGQLKYIEWPSF 120
           V+P F+MSRGG+YGLKFD+E  EDPFW+ +SKETIRGLK+L+ FLVQQPGQLKYIEWPSF
Sbjct: 130 VRPLFAMSRGGSYGLKFDNEDDEDPFWVHYSKETIRGLKTLLAFLVQQPGQLKYIEWPSF 189

Query: 121 NDTLRTATLTLVLVAGLIVALSSIDAGLSYVLALLLRKPA 161
            DTL TA+LTLVLVA LIVALSS+D+ LS+VLALL+RKPA
Sbjct: 190 QDTLWTASLTLVLVAALIVALSSLDSALSFVLALLVRKPA 229

[Close]

BLAST of Spo03987.1 vs. UniProtKB/TrEMBL
Match: A0A061DZS8_THECC (Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_006567 PE=3 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 4.700e-25
Identity = 65/102 (63.73%), Postives = 78/102 (76.47%), Query Frame = 1

		  
Query: 58  KKQVQPRFSMSRGGN-YGLKFDDECAEDPFWLRFSKETIRGLKSLVRFLVQQPGQLKYIE 117
           +K    R  MS G N + L FDDE  E+PFWL   +++I G++SL  FLV+QPGQLKYIE
Sbjct: 54  RKPYMSRHVMSVGSNRHQLSFDDELPEEPFWLSLIRDSIWGVRSLFAFLVEQPGQLKYIE 113

Query: 118 WPSFNDTLRTATLTLVLVAGLIVALSSIDAGLSYVLALLLRK 159
           WPSF  TL+TATLTLVLVA LIVALSS+D+ L YVLALLLR+
Sbjct: 114 WPSFQSTLKTATLTLVLVAMLIVALSSVDSVLCYVLALLLRR 155

[Close]

BLAST of Spo03987.1 vs. TAIR (Arabidopsis)
Match: AT4G38490.1 (unknown protein)

HSP 1 Score: 92.4 bits (228), Expect = 2.700e-19
Identity = 44/76 (57.89%), Postives = 58/76 (76.32%), Query Frame = 1

		  
Query: 83  EDPFWLRFSKETIRGLKSLVRFLVQQPGQLKYIEWPSFNDTLRTATLTLVLVAGLIVALS 142
           E+P WL   ++ +   +SL+ F+ +QP QLKYIEWP+F  TL+TATL+L LVA  IVALS
Sbjct: 76  EEPLWLSLLRDMVWSTRSLLSFMAEQPSQLKYIEWPTFASTLKTATLSLCLVAVFIVALS 135

Query: 143 SIDAGLSYVLALLLRK 159
           S+DA L Y+LAL+LRK
Sbjct: 136 SVDAALCYILALILRK 151

The following BLAST results are available for this feature:

BLAST of Spo03987.1 vs. NCBI nr
BLAST of Spo03987.1 vs. UniProtKB/TrEMBL
BLAST of Spo03987.1 vs. ExPASy Swiss-Prot
BLAST of Spo03987.1 vs. TAIR (Arabidopsis)

BLAST of Spo03987.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

Zoom :

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Match Name	E-value	Identity	Description
gi\|902228858\|gb\|KNA21289.1\|	5.8e-85	100.	hypothetical protein SOVF_0444...	[more]
gi\|902203878\|gb\|KNA14718.1\|	6.5e-76	90.6	hypothetical protein SOVF_1050...	[more]
gi\|731357645\|ref\|XP_010690322.1\|	4.8e-55	71.2	PREDICTED: uncharacterized pro...	[more]
gi\|870849088\|gb\|KMT01351.1\|	4.8e-55	71.2	hypothetical protein BVRB_9g21...	[more]
gi\|731357643\|ref\|XP_010690320.1\|	4.8e-55	71.2	PREDICTED: uncharacterized pro...	[more]

BLAST of Spo03987.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

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Match Name	E-value	Identity	Description
A0A0K9RQX4_SPIOL	4.1e-85	100.	Uncharacterized protein OS=Spi...	[more]
A0A0K9R5D4_SPIOL	4.5e-76	90.6	Uncharacterized protein OS=Spi...	[more]
A0A0J8EEG3_BETVU	3.4e-55	71.2	Uncharacterized protein OS=Bet...	[more]
A0A0J8BIT5_BETVU	3.4e-55	71.2	Uncharacterized protein OS=Bet...	[more]
A0A061DZS8_THECC	4.7e-25	63.7	Uncharacterized protein isofor...	[more]

BLAST of Spo03987.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0

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Match Name	E-value	Identity	Description

BLAST of Spo03987.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1

Position :

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Match Name	E-value	Identity	Description
AT4G38490.1	2.7e-19	57.8	unknown protein	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001901	Protein translocase complex, SecE/Sec61-gamma subunit	PFAM	PF00584	SecE	coord: 104..155 score: 1.
IPR022943	Preprotein translocase subunit SecE	HAMAP	MF_00422	SecE	coord: 99..154 score: 1
None	No IPR available	GENE3D	1.20.5.1030		coord: 99..156 score: 4.
None	No IPR available	PANTHER	PTHR37247	FAMILY NOT NAMED	coord: 69..160 score: 3.2
None	No IPR available	PANTHER	PTHR37247:SF1	SUBFAMILY NOT NAMED	coord: 69..160 score: 3.2

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006886	intracellular protein transport
biological_process	GO:0006605	protein targeting
cellular_component	GO:0016020	membrane