Spo04068.1 (mRNA)

Overview
NameSpo04068.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
Description40S ribosomal protein S24
LocationSpoScf_00092 : 460134 .. 462455 (-)
Sequence length952
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GAGCTCGGGTTAACTTTCGTTCTATGTTCAATAAATTACGCCTTTAAATTTTGGTAAAAAATAAATAAATAAACATAAACCCTAGCTAAGCAGCATTTCCCCCTTCCTTCTCTTTCCAGTCGCGAATCCTCTGAACTTCAAGCAGCAGTAGCTCTAATTCCCTGCTGAGAGGAGAGAGAGATAACAATGGCGGACAAGGCAGTTACTATCAGGACCCGCAAGTTTATGACCAACCGTCTTCTTTCCCGGAAGCAATTCGTGAGTTTTATAATCATATCTCCAATTTGCTGTTTTTAGGGTTTAATCATATGTTTGACGTTTGTTTTGAATTTGTTTCAGGTAATTGATGTTCTTCATCCTGGTCGCGCTAACGTCTCTAAGGTCTCTTGAATAAATTTTTTTGCAAGTGTTGTTTTTTTGTAATGAAAATTTTCCGAATCTGTAAACTCTTCAATCCCAATTGCTTTTAATTTCTTGTGGTCTGCCTATCCATCTCTAATTAAGTATTTATATCTTTGATTTTTACTTCGATTAGAGTTAATGGAGGATATACATCTGTACATAACAAACAATTCCGGATCTACAATTTTTCAAATGGCTTACTAAACGAATAGTGGAATTCGCCGCTATATGCCTATGTGTTTGAGTAATCCTGTTCAATTTATTTCTAAGTGGAAGTTTCCATGAATCATGAACATCCCCACTGTAATATAGTAAGTTGCCTTGCTAAACCAATTTGTAATTTGTCTCTGGACTCCGTTGATGTGTTATACTGTGTACTTCATTTAGTAAATGTTTTGAATTACACTACATATTTTTAAATTTGATGATGGATATATGCCTGAGGTGGGTTTGTCATGGTCATATTCTAGAAACGGAAGAGATGTTTGATTTATAACAACTCTTGCTGATTTTATTGCTGTATATTTAGCTCTTTTTTAACAGATTCAATCACGGGCTCATGGTATTTCCACTTGTATCAGAAGGTTTACATGTCAACTATGTATGTTCAACTTGTTGGTAGAGTTTCTTTGTTATCATTGAAAATAACAAGTGTTCTTGTTTTGATTGTATTATATGATAAATCTTGTGTTTGCGTGGAAATCTAGAGTTTGTGCAACTCACTTTGTTACATGGGGTTTAAGCTGCAAACTTTTTTGCTGGTGGTTTCATATTCAGTGGCTGTGCTATGGTTTGTCCTTTTGCAGTGTTTCCTTTTTCTCAATATTCTGAGCTCTTTCCTGATTGTTTGCTTGTATACTTTTTGATGAACAAATTTCAAGTGTTTCCTGTCGTACCACCGATTGTTACTACTATTCTATTTCTCCCTTACAATCTTACAACTTAAATCTTTAATTTCTCTCATGAAGGCGGAATTGAAGGACAAACTAGCTAGCATATATGATGTGAAAGATCCAAATTCTATCTTTGTGTTCAAGTTCCGTACTCATTTTGGAGGAGGTAAATCAACTGGATTCGGATTGATTTATGATTCTGTTGATAGTGCAAAGAAGTTCGAACCCAAGTACAGGCTGATAAGGGTAAGTATGCTGTTCCATTTGTGATCTTTATACTTGAAATTCCATTTGTGGTGGCAGTAAATGAGTTGCCTGTTTTGAGTTGCTGAGTGATATTACCGCTCCTATTTTTGCTTGGTGCAGAATGGATTGGCTACCAAGATTGAGAAGTCCAGAAAACAAATGAAAGAAAGGAAGAACAGAGCTAAGAAGATCCGTGGTGTTAAGAAGGTAGGAGAATGGACTTGCATTGTTGTTTTGGCTGATGGCTGTGATTGTCTAACTCCGATATGAGCCAACGCTATCAAATGTGGCTGATACTCTTTTTTATTTAAGTCTTTGTAAATCCCTGGCTTCTAAACTTCTCTATTTTATGTTTCTTTAACTTTGTCACATTTATTTCTTTGGCAGACCAAGGCTGCTGAAGCTGGAAAGAAGAAATGAGGAAATGGTGATGTTGAAAATTTTGCTGTTCCCTTTTTGGCGCATCTTCATTTCCTACTGTCCTTGTCCTTGATCTTCTCCCTGTTTTTGTTACTTGTTTACTCTAATTAGTCATAGCAACTTTAGTGAAAGATTATGAGACATCGAGATTTTCAAATGTTGTAAAACTTCATTAAAGAGCTTTATTAAAATTTTGACTGGTAATGGGTTATCTTGACAATTATTCAAGGGGATTCCAAGTGCTAATAGATGAAGCGTAAAGGCTAATCAGAATGGGACTGAGTATTGACAGCATTGCCTCCTGTCCTTGCATGATGCACAGCATGTCAATTTTACCTCTTACAAAACTTAGTAATAGTAG

mRNA sequence

GAGCTCGGGTTAACTTTCGTTCTATGTTCAATAAATTACGCCTTTAAATTTTGGTAAAAAATAAATAAATAAACATAAACCCTAGCTAAGCAGCATTTCCCCCTTCCTTCTCTTTCCAGTCGCGAATCCTCTGAACTTCAAGCAGCAGTAGCTCTAATTCCCTGCTGAGAGGAGAGAGAGATAACAATGGCGGACAAGGCAGTTACTATCAGGACCCGCAAGTTTATGACCAACCGTCTTCTTTCCCGGAAGCAATTCGTAATTGATGTTCTTCATCCTGGTCGCGCTAACGTCTCTAAGGCGGAATTGAAGGACAAACTAGCTAGCATATATGATGTGAAAGATCCAAATTCTATCTTTGTGTTCAAGTTCCGTACTCATTTTGGAGGAGGTAAATCAACTGGATTCGGATTGATTTATGATTCTGTTGATAGTGCAAAGAAGTTCGAACCCAAGTACAGGCTGATAAGGAATGGATTGGCTACCAAGATTGAGAAGTCCAGAAAACAAATGAAAGAAAGGAAGAACAGAGCTAAGAAGATCCGTGGTGTTAAGAAGACCAAGGCTGCTGAAGCTGGAAAGAAGAAATGAGGAAATGGTGATGTTGAAAATTTTGCTGTTCCCTTTTTGGCGCATCTTCATTTCCTACTGTCCTTGTCCTTGATCTTCTCCCTGTTTTTGTTACTTGTTTACTCTAATTAGTCATAGCAACTTTAGTGAAAGATTATGAGACATCGAGATTTTCAAATGTTGTAAAACTTCATTAAAGAGCTTTATTAAAATTTTGACTGGTAATGGGTTATCTTGACAATTATTCAAGGGGATTCCAAGTGCTAATAGATGAAGCGTAAAGGCTAATCAGAATGGGACTGAGTATTGACAGCATTGCCTCCTGTCCTTGCATGATGCACAGCATGTCAATTTTACCTCTTACAAAACTTAGTAATAGTAG

Coding sequence (CDS)

ATGGCGGACAAGGCAGTTACTATCAGGACCCGCAAGTTTATGACCAACCGTCTTCTTTCCCGGAAGCAATTCGTAATTGATGTTCTTCATCCTGGTCGCGCTAACGTCTCTAAGGCGGAATTGAAGGACAAACTAGCTAGCATATATGATGTGAAAGATCCAAATTCTATCTTTGTGTTCAAGTTCCGTACTCATTTTGGAGGAGGTAAATCAACTGGATTCGGATTGATTTATGATTCTGTTGATAGTGCAAAGAAGTTCGAACCCAAGTACAGGCTGATAAGGAATGGATTGGCTACCAAGATTGAGAAGTCCAGAAAACAAATGAAAGAAAGGAAGAACAGAGCTAAGAAGATCCGTGGTGTTAAGAAGACCAAGGCTGCTGAAGCTGGAAAGAAGAAATGA

Protein sequence

MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKDKLASIYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLATKIEKSRKQMKERKNRAKKIRGVKKTKAAEAGKKK
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo04068Spo04068gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo04068.1Spo04068.1-proteinpolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo04068.1.utr5p.1Spo04068.1.utr5p.1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo04068.1.CDS.5Spo04068.1.CDS.5CDS
Spo04068.1.CDS.4Spo04068.1.CDS.4CDS
Spo04068.1.CDS.3Spo04068.1.CDS.3CDS
Spo04068.1.CDS.2Spo04068.1.CDS.2CDS
Spo04068.1.CDS.1Spo04068.1.CDS.1CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo04068.1.utr3p.1Spo04068.1.utr3p.1three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo04068.1.exon.5Spo04068.1.exon.5exon
Spo04068.1.exon.4Spo04068.1.exon.4exon
Spo04068.1.exon.3Spo04068.1.exon.3exon
Spo04068.1.exon.2Spo04068.1.exon.2exon
Spo04068.1.exon.1Spo04068.1.exon.1exon


Homology
[Close]
BLAST of Spo04068.1 vs. NCBI nr
Match: gi|902185865|gb|KNA10566.1| (hypothetical protein SOVF_143160 [Spinacia oleracea])

HSP 1 Score: 253.1 bits (645), Expect = 2.800e-64
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 1 

		  

Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKDKLASIYDVKDPNSIFVF 60
           MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKDKLASIYDVKDPNSIFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKDKLASIYDVKDPNSIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLATKIEKSRKQMKERKNRAKKIR 120
           KFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLATKIEKSRKQMKERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLATKIEKSRKQMKERKNRAKKIR 120

Query: 121 GVKKTKAAEAGKKK 135
           GVKKTKAAEAGKKK
Sbjct: 121 GVKKTKAAEAGKKK 134
[Close]
BLAST of Spo04068.1 vs. NCBI nr
Match: gi|731355201|ref|XP_010689015.1| (PREDICTED: 40S ribosomal protein S24-1-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 242.7 bits (618), Expect = 3.800e-61
Identity = 127/134 (94.78%), Postives = 132/134 (98.51%), Query Frame = 1 

		  

Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKDKLASIYDVKDPNSIFVF 60
           MADKAVT+RTRKFMTNRLLSRKQFVIDVLHPGRANVSK ELK+KLAS+YDVKD NSIFVF
Sbjct: 1   MADKAVTLRTRKFMTNRLLSRKQFVIDVLHPGRANVSKTELKEKLASMYDVKDTNSIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLATKIEKSRKQMKERKNRAKKIR 120
           KFRTHFGGGKSTGFGLIYDSVDSAKK+EPKYRLIRNGLATKIEKSRKQMKERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVDSAKKYEPKYRLIRNGLATKIEKSRKQMKERKNRAKKIR 120

Query: 121 GVKKTKAAEAGKKK 135
           GVKKTKAA+AGKKK
Sbjct: 121 GVKKTKAADAGKKK 134
[Close]
BLAST of Spo04068.1 vs. NCBI nr
Match: gi|567880979|ref|XP_006433048.1| (hypothetical protein CICLE_v10002819mg [Citrus clementina])

HSP 1 Score: 241.1 bits (614), Expect = 1.100e-60
Identity = 126/134 (94.03%), Postives = 131/134 (97.76%), Query Frame = 1 

		  

Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKDKLASIYDVKDPNSIFVF 60
           MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELK+KLA +YDVKDPNSIFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLATKIEKSRKQMKERKNRAKKIR 120
           KFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGL TK+EKSRKQMKERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120

Query: 121 GVKKTKAAEAGKKK 135
           GVKKTKA++A KKK
Sbjct: 121 GVKKTKASDAAKKK 134
[Close]
BLAST of Spo04068.1 vs. NCBI nr
Match: gi|566190013|ref|XP_002315773.2| (hypothetical protein POPTR_0010s09820g [Populus trichocarpa])

HSP 1 Score: 238.0 bits (606), Expect = 9.300e-60
Identity = 121/134 (90.30%), Postives = 132/134 (98.51%), Query Frame = 1 

		  

Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKDKLASIYDVKDPNSIFVF 60
           M+DKAVTIRTRKFMTNRLLSRKQF+IDVLHPGRANVSKAELK+KLAS+Y+VKDPNSIFVF
Sbjct: 1   MSDKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRANVSKAELKEKLASLYEVKDPNSIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLATKIEKSRKQMKERKNRAKKIR 120
           KFRTHFGGGKSTGFGLIYDSV+SAKK+EPKYRLIRNGLATK+EKSRKQ+KERKNRAKK+R
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVESAKKYEPKYRLIRNGLATKVEKSRKQLKERKNRAKKVR 120

Query: 121 GVKKTKAAEAGKKK 135
           GVKKTKA +A KKK
Sbjct: 121 GVKKTKAGDAAKKK 134
[Close]
BLAST of Spo04068.1 vs. NCBI nr
Match: gi|902207101|gb|KNA15623.1| (hypothetical protein SOVF_096550 [Spinacia oleracea])

HSP 1 Score: 238.0 bits (606), Expect = 9.300e-60
Identity = 127/133 (95.49%), Postives = 129/133 (96.99%), Query Frame = 1 

		  

Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKDKLASIYDVKDPNSIFVF 60
           MA+KAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELK+KLA IYDV D NSIFVF
Sbjct: 1   MAEKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARIYDVNDLNSIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLATKIEKSRKQMKERKNRAKKIR 120
           KFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLATKIEKSRKQMKERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLATKIEKSRKQMKERKNRAKKIR 120

Query: 121 GVKKTKAAEAGKK 134
           GVKKTKAAEA KK
Sbjct: 121 GVKKTKAAEAKKK 133
[Close]
BLAST of Spo04068.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QVM4_SPIOL (40S ribosomal protein S24 OS=Spinacia oleracea GN=SOVF_143160 PE=3 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 1.900e-64
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 1 

		  

Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKDKLASIYDVKDPNSIFVF 60
           MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKDKLASIYDVKDPNSIFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKDKLASIYDVKDPNSIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLATKIEKSRKQMKERKNRAKKIR 120
           KFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLATKIEKSRKQMKERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLATKIEKSRKQMKERKNRAKKIR 120

Query: 121 GVKKTKAAEAGKKK 135
           GVKKTKAAEAGKKK
Sbjct: 121 GVKKTKAAEAGKKK 134
[Close]
BLAST of Spo04068.1 vs. UniProtKB/TrEMBL
Match: A0A0J8EHA4_BETVU (40S ribosomal protein S24 OS=Beta vulgaris subsp. vulgaris GN=BVRB_9g204940 PE=3 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 2.600e-61
Identity = 127/134 (94.78%), Postives = 132/134 (98.51%), Query Frame = 1 

		  

Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKDKLASIYDVKDPNSIFVF 60
           MADKAVT+RTRKFMTNRLLSRKQFVIDVLHPGRANVSK ELK+KLAS+YDVKD NSIFVF
Sbjct: 1   MADKAVTLRTRKFMTNRLLSRKQFVIDVLHPGRANVSKTELKEKLASMYDVKDTNSIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLATKIEKSRKQMKERKNRAKKIR 120
           KFRTHFGGGKSTGFGLIYDSVDSAKK+EPKYRLIRNGLATKIEKSRKQMKERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVDSAKKYEPKYRLIRNGLATKIEKSRKQMKERKNRAKKIR 120

Query: 121 GVKKTKAAEAGKKK 135
           GVKKTKAA+AGKKK
Sbjct: 121 GVKKTKAADAGKKK 134
[Close]
BLAST of Spo04068.1 vs. UniProtKB/TrEMBL
Match: A0A067EHB1_CITSI (40S ribosomal protein S24 OS=Citrus sinensis GN=CISIN_1g032760mg PE=3 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 7.700e-61
Identity = 126/134 (94.03%), Postives = 131/134 (97.76%), Query Frame = 1 

		  

Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKDKLASIYDVKDPNSIFVF 60
           MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELK+KLA +YDVKDPNSIFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLATKIEKSRKQMKERKNRAKKIR 120
           KFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGL TK+EKSRKQMKERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120

Query: 121 GVKKTKAAEAGKKK 135
           GVKKTKA++A KKK
Sbjct: 121 GVKKTKASDAAKKK 134
[Close]
BLAST of Spo04068.1 vs. UniProtKB/TrEMBL
Match: V4SF69_9ROSI (40S ribosomal protein S24 OS=Citrus clementina GN=CICLE_v10002819mg PE=3 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 7.700e-61
Identity = 126/134 (94.03%), Postives = 131/134 (97.76%), Query Frame = 1 

		  

Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKDKLASIYDVKDPNSIFVF 60
           MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELK+KLA +YDVKDPNSIFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLATKIEKSRKQMKERKNRAKKIR 120
           KFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGL TK+EKSRKQMKERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120

Query: 121 GVKKTKAAEAGKKK 135
           GVKKTKA++A KKK
Sbjct: 121 GVKKTKASDAAKKK 134
[Close]
BLAST of Spo04068.1 vs. UniProtKB/TrEMBL
Match: A9PC05_POPTR (40S ribosomal protein S24 OS=Populus trichocarpa GN=POPTR_0010s09820g PE=2 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 6.500e-60
Identity = 121/134 (90.30%), Postives = 132/134 (98.51%), Query Frame = 1 

		  

Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKDKLASIYDVKDPNSIFVF 60
           M+DKAVTIRTRKFMTNRLLSRKQF+IDVLHPGRANVSKAELK+KLAS+Y+VKDPNSIFVF
Sbjct: 1   MSDKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRANVSKAELKEKLASLYEVKDPNSIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLATKIEKSRKQMKERKNRAKKIR 120
           KFRTHFGGGKSTGFGLIYDSV+SAKK+EPKYRLIRNGLATK+EKSRKQ+KERKNRAKK+R
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVESAKKYEPKYRLIRNGLATKVEKSRKQLKERKNRAKKVR 120

Query: 121 GVKKTKAAEAGKKK 135
           GVKKTKA +A KKK
Sbjct: 121 GVKKTKAGDAAKKK 134
[Close]
BLAST of Spo04068.1 vs. ExPASy Swiss-Prot
Match: RS241_ARATH (40S ribosomal protein S24-1 OS=Arabidopsis thaliana GN=RPS24A PE=2 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 2.700e-59
Identity = 119/133 (89.47%), Postives = 129/133 (96.99%), Query Frame = 1 

		  

Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKDKLASIYDVKDPNSIFVF 60
           MA+KAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELK+KLA +Y+VKDPN+IFVF
Sbjct: 1   MAEKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLATKIEKSRKQMKERKNRAKKIR 120
           KFRTHFGGGKS+GFGLIYD+V+SAKKFEPKYRLIRNGL TKIEKSRKQ+KERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSSGFGLIYDTVESAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIR 120

Query: 121 GVKKTKAAEAGKK 134
           GVKKTKA +A KK
Sbjct: 121 GVKKTKAGDAKKK 133
[Close]
BLAST of Spo04068.1 vs. ExPASy Swiss-Prot
Match: RS242_ARATH (40S ribosomal protein S24-2 OS=Arabidopsis thaliana GN=RPS24B PE=2 SV=2)

HSP 1 Score: 220.3 bits (560), Expect = 1.300e-56
Identity = 113/133 (84.96%), Postives = 126/133 (94.74%), Query Frame = 1 

		  

Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKDKLASIYDVKDPNSIFVF 60
           MA+KAVTIRTR FMTNRLL+RKQFVIDVLHPGRANVSKAELK+KLA +Y+VKDPN+IF F
Sbjct: 1   MAEKAVTIRTRNFMTNRLLARKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFCF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLATKIEKSRKQMKERKNRAKKIR 120
           KFRTHFGGGKS+G+GLIYD+V++AKKFEPKYRLIRNGL TKIEKSRKQ+KERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSSGYGLIYDTVENAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIR 120

Query: 121 GVKKTKAAEAGKK 134
           GVKKTKA +  KK
Sbjct: 121 GVKKTKAGDTKKK 133
[Close]
BLAST of Spo04068.1 vs. ExPASy Swiss-Prot
Match: RS24_SPOFR (40S ribosomal protein S24 OS=Spodoptera frugiperda GN=RpS24 PE=2 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 1.200e-38
Identity = 85/133 (63.91%), Postives = 103/133 (77.44%), Query Frame = 1 

		  

Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKDKLASIYDVKDPNSIFVF 60
           M +   TIRTRKFMTNRLL+RKQ V DVLHPG+  VSK E+++KLA +Y V  P+ +FVF
Sbjct: 1   MTEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVT-PDVVFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLATKIEKSRKQMKERKNRAKKIR 120
            F+T+FGGGKSTGF LIYD++D AKKFEPK+RL R+GL  K   +RKQ KERKNR KK+R
Sbjct: 61  GFKTNFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVR 120

Query: 121 GVKKTKAAEAGKK 134
           G KK+K   A KK
Sbjct: 121 GTKKSKVGAAAKK 132
[Close]
BLAST of Spo04068.1 vs. ExPASy Swiss-Prot
Match: RS24_PONAB (40S ribosomal protein S24 OS=Pongo abelii GN=RPS24 PE=2 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 3.400e-38
Identity = 88/129 (68.22%), Postives = 101/129 (78.29%), Query Frame = 1 

		  

Query: 6   VTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKDKLASIYDVKDPNSIFVFKFRTH 65
           VTIRTRKFMTNRLL RKQ VIDVLHPG+A V K E+++KLA +Y    P+ IFVF FRTH
Sbjct: 5   VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTT-PDVIFVFGFRTH 64

Query: 66  FGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLATKIEKSRKQMKERKNRAKKIRGVKKT 125
           FGGGK+TGFG+IYDS+D AKK EPK+RL R+GL  K + SRKQ KERKNR KK+RG  K 
Sbjct: 65  FGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRGTAKA 124

Query: 126 KAAEAGKKK 135
               AGKKK
Sbjct: 125 NVG-AGKKK 131
[Close]
BLAST of Spo04068.1 vs. ExPASy Swiss-Prot
Match: RS24_BOVIN (40S ribosomal protein S24 OS=Bos taurus GN=RPS24 PE=2 SV=2)

HSP 1 Score: 159.1 bits (401), Expect = 3.400e-38
Identity = 88/129 (68.22%), Postives = 101/129 (78.29%), Query Frame = 1 

		  

Query: 6   VTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKDKLASIYDVKDPNSIFVFKFRTH 65
           VTIRTRKFMTNRLL RKQ VIDVLHPG+A V K E+++KLA +Y    P+ IFVF FRTH
Sbjct: 5   VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTT-PDVIFVFGFRTH 64

Query: 66  FGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLATKIEKSRKQMKERKNRAKKIRGVKKT 125
           FGGGK+TGFG+IYDS+D AKK EPK+RL R+GL  K + SRKQ KERKNR KK+RG  K 
Sbjct: 65  FGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRGTAKA 124

Query: 126 KAAEAGKKK 135
               AGKKK
Sbjct: 125 NVG-AGKKK 131
[Close]
BLAST of Spo04068.1 vs. TAIR (Arabidopsis)
Match: AT3G04920.1 (Ribosomal protein S24e family protein)

HSP 1 Score: 229.2 bits (583), Expect = 1.500e-60
Identity = 119/133 (89.47%), Postives = 129/133 (96.99%), Query Frame = 1 

		  

Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKDKLASIYDVKDPNSIFVF 60
           MA+KAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELK+KLA +Y+VKDPN+IFVF
Sbjct: 1   MAEKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLATKIEKSRKQMKERKNRAKKIR 120
           KFRTHFGGGKS+GFGLIYD+V+SAKKFEPKYRLIRNGL TKIEKSRKQ+KERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSSGFGLIYDTVESAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIR 120

Query: 121 GVKKTKAAEAGKK 134
           GVKKTKA +A KK
Sbjct: 121 GVKKTKAGDAKKK 133
[Close]
BLAST of Spo04068.1 vs. TAIR (Arabidopsis)
Match: AT5G28060.1 (Ribosomal protein S24e family protein)

HSP 1 Score: 220.3 bits (560), Expect = 7.100e-58
Identity = 113/133 (84.96%), Postives = 126/133 (94.74%), Query Frame = 1 

		  

Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKDKLASIYDVKDPNSIFVF 60
           MA+KAVTIRTR FMTNRLL+RKQFVIDVLHPGRANVSKAELK+KLA +Y+VKDPN+IF F
Sbjct: 1   MAEKAVTIRTRNFMTNRLLARKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFCF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLATKIEKSRKQMKERKNRAKKIR 120
           KFRTHFGGGKS+G+GLIYD+V++AKKFEPKYRLIRNGL TKIEKSRKQ+KERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSSGYGLIYDTVENAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIR 120

Query: 121 GVKKTKAAEAGKK 134
           GVKKTKA +  KK
Sbjct: 121 GVKKTKAGDTKKK 133
The following BLAST results are available for this feature:
BLAST of Spo04068.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902185865|gb|KNA10566.1|2.8e-64100.hypothetical protein SOVF_1431... [more]
gi|731355201|ref|XP_010689015.1|3.8e-6194.7PREDICTED: 40S ribosomal prote... [more]
gi|567880979|ref|XP_006433048.1|1.1e-6094.0hypothetical protein CICLE_v10... [more]
gi|566190013|ref|XP_002315773.2|9.3e-6090.3hypothetical protein POPTR_001... [more]
gi|902207101|gb|KNA15623.1|9.3e-6095.4hypothetical protein SOVF_0965... [more]
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BLAST of Spo04068.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9QVM4_SPIOL1.9e-64100.40S ribosomal protein S24 OS=S... [more]
A0A0J8EHA4_BETVU2.6e-6194.740S ribosomal protein S24 OS=B... [more]
A0A067EHB1_CITSI7.7e-6194.040S ribosomal protein S24 OS=C... [more]
V4SF69_9ROSI7.7e-6194.040S ribosomal protein S24 OS=C... [more]
A9PC05_POPTR6.5e-6090.340S ribosomal protein S24 OS=P... [more]
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BLAST of Spo04068.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RS241_ARATH2.7e-5989.440S ribosomal protein S24-1 OS... [more]
RS242_ARATH1.3e-5684.940S ribosomal protein S24-2 OS... [more]
RS24_SPOFR1.2e-3863.940S ribosomal protein S24 OS=S... [more]
RS24_PONAB3.4e-3868.240S ribosomal protein S24 OS=P... [more]
RS24_BOVIN3.4e-3868.240S ribosomal protein S24 OS=B... [more]
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BLAST of Spo04068.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2
Match NameE-valueIdentityDescription
AT3G04920.11.5e-6089.4Ribosomal protein S24e family ... [more]
AT5G28060.17.1e-5884.9Ribosomal protein S24e family ... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001976Ribosomal protein S24ePRODOMPD006052coord: 14..86
score: 4.0
IPR001976Ribosomal protein S24eHAMAPMF_00545Ribosomal_S24ecoord: 4..106
score: 19
IPR001976Ribosomal protein S24ePANTHERPTHR1049640S RIBOSOMAL PROTEIN S24coord: 1..134
score: 8.8E
IPR001976Ribosomal protein S24ePFAMPF01282Ribosomal_S24ecoord: 25..103
score: 4.1
IPR012677Nucleotide-binding alpha-beta plait domainGENE3D3.30.70.330coord: 6..108
score: 6.5
IPR012678Ribosomal protein L23/L15e core domainunknownSSF54189Ribosomal proteins S24e, L23 and L15ecoord: 6..108
score: 6.04
IPR018098Ribosomal S24e conserved sitePROSITEPS00529RIBOSOMAL_S24Ecoord: 66..88
scor
NoneNo IPR availableunknownCoilCoilcoord: 99..119
scor

GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
biological_process GO:0042254 ribosome biogenesis
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0003735 structural constituent of ribosome