Spo04254.1 (mRNA)

Overview
NameSpo04254.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
LocationSuper_scaffold_150 : 1625330 .. 1629547 (-)
Sequence length1071
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCAACATCCAACACCTCTAGTACCCAAGTATTTCTCAAAATTTTAAATTGGTGAAATAAAAATACAATCGTATTAATTCACTGTATGAAATACGAATATCTTTGTTTCCAAATATTGTGTAATGTCAACACCTACTAGTTGTTGCATACAAATTAGTACTCCATAATAGGAGAAAGAACGTGTAAAAATCGGACAACATATGCAATGACATTAATCACCCAATAATATAAGTGGCCATTAAAATATTATAAGTATTCCATGGAATTGAAGTGACAAATTTTGCAAAAAAAAAAAAAAAGTGACAAATTTTTGCGGACTAAATGTGGGTCTTCATGCAAAGATTTATGAACACAAATAAAATAAAGTTGAAATGTTAACAATTTTATATAACAGACTAATTAATACGAAGTATTCGATTAGGAAAGAAAAACTATAATAAGAAAATAGAGATGGGGCATTCCGAGAATTGAACTCGGGACCTCTCGCACCCTAAGCGAGAATCATACCACTAGACCAAATGCCCATTGTTGAATCCTGAAGAAACTTATAGTTATATAAATTGTTGTAATTAGAATGGGCCTGAATGCCTAACACGGTTCCTAGGACTACTCGAAAACAAATCAAACATAGTAATTGTGACCCAAATCAATTAATCAATCAAACATACAAAACTGCAATTCATTTTTAGGGTTCTTTCAGAAATCGGATCAAAAGAGGAGAGAGAAAAAGGAGAGCATTGAAAAAATGGTAGGAGCATCATCAACAGGAATGTTCAAGTTTTTGAAGCCAACGATGCGACCTCAAACAACCGATATTAAAGCCGCCGTTGGTTGGGGTGTCGCCGCCGCCACCGGAGGCCTTTATCTCGTCCAGGTTTTTTTTTCCTCTCCTCCCCCATTTTCAAACTTGTAGCTTGATTCAAATTTCATATTTTGCTTATTATTTCAATTTGTCTTTTAGATTGAATGGGATTTATTTGAGGGATGATGAACCCCTTTTAATTTTGATTTGAAAAAAACTTGGGATTAGATCTGTCGGATGTGAATTGATGTGATATGATTTTTTTGCATGTGGTTTTTGGGTTTCTGTTGATTTACATCTATAAAACGTGGGTGGTTGGGTAGGAATGAAAGGTTGACTGAGTTGTTGAAGGGTATTAATTGCATAATTTGATGAATTTATGTGTTGCTGTTTATGGGTTTAAATCAGTGGGATAGTAGAAGATTTTAATGATGATATTGGTGAGGAACCGTGAATTGCTTGAATTATGTGGTTGTTTTTTTCGGGTTCAATTCATGTTATTCAGATTGTTCCTTACATCTCAATTGCCTGTGCCGTATCCTCGGTATTCTGACATGTGTATGGATTCTTTGATGCTTCATTTTGGATAAAGAAACTTGGAACTCTGGTATAAAATTGTCATGTCTATTGCTTAGACATATATTTGTGTCTGATATGAGTTTGAGAGTCTAAATAATGTAGTTTATACCCATCTTGTTGGGTAATACATGGGATTTGGGAATTTGGATCAGATATAATAACCCAAAAGAATTGCACTCGGATGGATGAAGTCTAGATGTGCCGGCTTGTTTTTGGAGTTTTTCTTTTCAATCAAAGCACATAGGTTGAAACTTTAGCTTACCGGTTGATCAGTTGAATCAAATGGTTTTTTTTATTCTTAACCTTTAGTATCGTTAGATACTACATTTACTGGTTTATGATAGTTTGCAATTGTTTCACTCATTCCTTTGATGCAATGCTGCTATGTGTTGGCAAACACTTGAGCAGTAAATTTTGTAATATTTTTGAAATTCAGTGTACTCCTTTGTCTAATTAGGATTCTAATGACATTATTTGTGATAAATGAAGCAGTGATGAGTAAATACAAACCTGTAATGACCTGCAGCTCATTTATGAACTTCTAAGGGACTGAGAGTTTTTTTCACCAGTTTGTTTTTACTTTGTAAATAGTTCCGTGGAACTTATTAGTTGCTTTTTTGGGCTACTGTACCACTCTCCACTTTTTTTTCTTTTTTATTTTGACAGCGGCGCTATACAACCATTTTATTAATGTTGTTGAATAATCTTTTGAGATTCAAGAGATTTCAAAATTCCATAAGTCGGAACTGCTCTTGAGGATGCAGAAAACATCTTCGTATTTGAAAAGTTTGACACAAGTTTTGATGCATGGAAACCTCTTGAGTCTTGATGTACATACAATATTGCATTTCTGGTTGGGGTTTCGTATTTCCGATTCTTTGTTTTCATTAATTAATAAACAGGTGGGAGGAGACTAAGCCTTAGAGAGATGTAAGCTTCGTTTTCCTAATTCTTATTGTGAAAATATAAGTTCAAATAATTTAAGGTCATGGGCTCATTTCTGATACCAGTGATAAGTTTAAATAAGTTAAGTTTAGGGTCATTAAGTTCAAATTGGTCAAGTGCAGGGCTAATGCGTTAAGATAAGTTCAGGTAAGTTAACTTTAGGGCTTATAGGTTAAGATAAGTTCATGTAAGAGAAGAGAACATGCCCATTGGGGAAAAGGTGCTGGTCAGATATTTGTGTAAAGCATTGATGACACCAAGTCACCAAGTATGCTGTTGGTTTATGTAGGATCTCACAAATGATTTCTAATCTTAGTTACAATTCCAGTTAGGAACTCCGTTGTTGTTTGAAGCTGGTGATGTTTACTCATAAATCCTGCTTTGAAGTGTGCATATTTGTTGTTTTTAGTTTAATTTCTTTTACATAAAAGCGAATTAAATGTACGTGATTTTCTTTTCAGTCTTGGATATCCAAAACAAATTTATTACAATGTGTGTTGGTGTGTATACACTATCTGGAGTTGTTCTGCACATCTTTAGTTTGAATAGGGTTCAAGCGGAGGGGATTCCTCTGATAATGAATTTGATTGGTGTTTTAAGACTAATTATGCATGGAACTTGGACATGGATAGTAACAACATCGTTTAGCTGTAGGAGGTGTATAACAGATTCATTGGATTGGAATTCAGTAATATTTGGCACCTCAGCGTGATTGCATATTTTAATTTGCTGATAATGGAATGTTATAGGTACATTGCATGCTTTCATTGTAGCCTTATACCAATGAGGTTGCTTTATTACTGAGGAAAGGAACATCATGTAGTTTAAATCTGTCTTGTTTTTTTGAAGTTGGTTTGAATCTGTCTTAATAAATGCTGTTGTGTGAGATTTTCTGGCATGGACTAACCCAAGTAATTATATTTTAGATGGAAACTTGCCAGTCTGAATTTTTAGGTGATGATGATTAAGAATTCTGTTCCATGTTATGGTTGATTCCTACGTTGTATACATATGATCTCATTTGTTGGTATATGGGCATGAGTTAATTTTGTCACTTTACATGAATATTAGTTAACATGCCATTTTGACCTTATTTAACTTATTTGTGTTGTTTGTGACAGCCCTGGGGTTGGATCAAGAGGACTTTTATTGACAAGCCAGAAGAGGAGAATAAATGAAGTTGAAGCTTTGCCAAAATCCTCCTTGTGGTCTTGGAAGAATATTGTACCCAGCCTTGAAATCTAATAATACGTTATGGTTTTTACTATTTCCTGTCTAAGAGATGGCGAGGCTTTTTGGTGTTAGTTTTTGCAATCAACATTGAAACTAATTTAGACGGATTACAGTTATATCCTTTCAATGATTCATTTCATTTTTGCAAATTGCAATAAGCACTCTCAACACTATTGGAGATGGGTTTCTGGTTTAAATCTAAAGCTAAATGTATGATGTATTTAGTTTAGCCGATTTTGTTAAAGTTTGAGAGACTGTTTCATTTCAGTTGTGTCCTACTAGTAAGTGTCTGTTTTAGAGCTGTGTTGCACGTATTAGGATTCGACTCTTTCTGGAAGGCCTTGTGTTGCCCTCACGTTTCTCTACTAGTAACTAGTAAGTGTTGCTGTGTTGTCGGTTTTCAACAATCATTTGTGGTGGCTCGGGGATTGATTTCAGCACAGGGGAACTACTTTTTAATCTGTCATAACCTCAAATCATGTCCGCAAATCTTAGCTGAAAAGGTCAAGTTGAGTCCACCATACACCCACCACTCCACCACCGTTGTCCTGACTCCTGCTGCTACTCAAAAGGATTGACAAAATTTAAGGGATAAGAAAAATACGATTAAGTACTTTTGAGTCCTCTATTATGAGTTGATAAATACTTATACTTGAC

mRNA sequence

ATGTCAACATCCAACACCTCTAGGTTCTTTCAGAAATCGGATCAAAAGAGGAGAGAGAAAAAGGAGAGCATTGAAAAAATGGTAGGAGCATCATCAACAGGAATGTTCAAGTTTTTGAAGCCAACGATGCGACCTCAAACAACCGATATTAAAGCCGCCGTTGGTTGGGGTGTCGCCGCCGCCACCGGAGGCCTTTATCTCGTCCAGGAGGTGTATAACAGATTCATTGGATTGGAATTCAGTAATATTTGGCACCTCAGCGTGATTGCATATTTTAATTTGCTGATAATGGAATGTTATAGCCCTGGGGTTGGATCAAGAGGACTTTTATTGACAAGCCAGAAGAGGAGAATAAATGAAGTTGAAGCTTTGCCAAAATCCTCCTTGTGGTCTTGGAAGAATATTGTACCCAGCCTTGAAATCTAATAATACGTTATGGTTTTTACTATTTCCTGTCTAAGAGATGGCGAGGCTTTTTGGTGTTAGTTTTTGCAATCAACATTGAAACTAATTTAGACGGATTACAGTTATATCCTTTCAATGATTCATTTCATTTTTGCAAATTGCAATAAGCACTCTCAACACTATTGGAGATGGGTTTCTGGTTTAAATCTAAAGCTAAATGTATGATGTATTTAGTTTAGCCGATTTTGTTAAAGTTTGAGAGACTGTTTCATTTCAGTTGTGTCCTACTAGTAAGTGTCTGTTTTAGAGCTGTGTTGCACGTATTAGGATTCGACTCTTTCTGGAAGGCCTTGTGTTGCCCTCACGTTTCTCTACTAGTAACTAGTAAGTGTTGCTGTGTTGTCGGTTTTCAACAATCATTTGTGGTGGCTCGGGGATTGATTTCAGCACAGGGGAACTACTTTTTAATCTGTCATAACCTCAAATCATGTCCGCAAATCTTAGCTGAAAAGGTCAAGTTGAGTCCACCATACACCCACCACTCCACCACCGTTGTCCTGACTCCTGCTGCTACTCAAAAGGATTGACAAAATTTAAGGGATAAGAAAAATACGATTAAGTACTTTTGAGTCCTCTATTATGAGTTGATAAATACTTATACTTGAC

Coding sequence (CDS)

ATGTCAACATCCAACACCTCTAGGTTCTTTCAGAAATCGGATCAAAAGAGGAGAGAGAAAAAGGAGAGCATTGAAAAAATGGTAGGAGCATCATCAACAGGAATGTTCAAGTTTTTGAAGCCAACGATGCGACCTCAAACAACCGATATTAAAGCCGCCGTTGGTTGGGGTGTCGCCGCCGCCACCGGAGGCCTTTATCTCGTCCAGGAGGTGTATAACAGATTCATTGGATTGGAATTCAGTAATATTTGGCACCTCAGCGTGATTGCATATTTTAATTTGCTGATAATGGAATGTTATAGCCCTGGGGTTGGATCAAGAGGACTTTTATTGACAAGCCAGAAGAGGAGAATAAATGAAGTTGAAGCTTTGCCAAAATCCTCCTTGTGGTCTTGGAAGAATATTGTACCCAGCCTTGAAATCTAA

Protein sequence

MSTSNTSRFFQKSDQKRREKKESIEKMVGASSTGMFKFLKPTMRPQTTDIKAAVGWGVAAATGGLYLVQEVYNRFIGLEFSNIWHLSVIAYFNLLIMECYSPGVGSRGLLLTSQKRRINEVEALPKSSLWSWKNIVPSLEI
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo04254Spo04254gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo04254.1Spo04254.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo04254.1.CDS.4Spo04254.1.CDS.4CDS
Spo04254.1.CDS.3Spo04254.1.CDS.3CDS
Spo04254.1.CDS.2Spo04254.1.CDS.2CDS
Spo04254.1.CDS.1Spo04254.1.CDS.1CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo04254.1.utr3p.1Spo04254.1.utr3p.1three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo04254.1.exon.4Spo04254.1.exon.4exon
Spo04254.1.exon.3Spo04254.1.exon.3exon
Spo04254.1.exon.2Spo04254.1.exon.2exon
Spo04254.1.exon.1Spo04254.1.exon.1exon


Homology
[Close]
BLAST of Spo04254.1 vs. NCBI nr
Match: gi|902160354|gb|KNA06435.1| (hypothetical protein SOVF_181170 [Spinacia oleracea])

HSP 1 Score: 89.7 bits (221), Expect = 4.300e-15
Identity = 43/43 (100.00%), Postives = 43/43 (100.00%), Query Frame = 1 

		  

Query: 27 MVGASSTGMFKFLKPTMRPQTTDIKAAVGWGVAAATGGLYLVQ 70
          MVGASSTGMFKFLKPTMRPQTTDIKAAVGWGVAAATGGLYLVQ
Sbjct: 1  MVGASSTGMFKFLKPTMRPQTTDIKAAVGWGVAAATGGLYLVQ 43
[Close]
BLAST of Spo04254.1 vs. NCBI nr
Match: gi|870866446|gb|KMT17428.1| (hypothetical protein BVRB_2g038800 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 77.0 bits (188), Expect = 2.900e-11
Identity = 35/43 (81.40%), Postives = 40/43 (93.02%), Query Frame = 1 

		  

Query: 27 MVGASSTGMFKFLKPTMRPQTTDIKAAVGWGVAAATGGLYLVQ 70
          M GAS++GMFKFLKP+MRPQ +DIKAAVGWGVAAAT G+YLVQ
Sbjct: 1  MAGASASGMFKFLKPSMRPQPSDIKAAVGWGVAAATAGIYLVQ 43
[Close]
BLAST of Spo04254.1 vs. NCBI nr
Match: gi|1351365|sp|P48505.2|UCR11_SOLTU (RecName: Full=Ubiquinol-cytochrome c reductase complex 6.7 kDa protein; Short=CR6)

HSP 1 Score: 61.2 bits (147), Expect = 1.600e-6
Identity = 25/40 (62.50%), Postives = 34/40 (85.00%), Query Frame = 1 

		  

Query: 30 ASSTGMFKFLKPTMRPQTTDIKAAVGWGVAAATGGLYLVQ 70
          A+  G+FKFL+P +RPQ+TDI+AA GWGVAA TG L+++Q
Sbjct: 6  AAGNGLFKFLRPKLRPQSTDIQAAAGWGVAAVTGALWVIQ 45
[Close]
BLAST of Spo04254.1 vs. NCBI nr
Match: gi|293336024|ref|NP_001169741.1| (uncharacterized LOC100383622 [Zea mays])

HSP 1 Score: 60.1 bits (144), Expect = 3.700e-6
Identity = 28/45 (62.22%), Postives = 33/45 (73.33%), Query Frame = 1 

		  

Query: 30 ASSTGMFKFLKPTMRPQTTDIKAAVGWGVAAATGGLYLVQEVYNR 75
          ASS+G+F+F+ P  RPQ+TDI AA  WGV A T GLYLVQ   NR
Sbjct: 5  ASSSGLFRFVSPRSRPQSTDIVAAASWGVFAGTAGLYLVQVRINR 49
[Close]
BLAST of Spo04254.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QGT9_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_181170 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 3.000e-15
Identity = 43/43 (100.00%), Postives = 43/43 (100.00%), Query Frame = 1 

		  

Query: 27 MVGASSTGMFKFLKPTMRPQTTDIKAAVGWGVAAATGGLYLVQ 70
          MVGASSTGMFKFLKPTMRPQTTDIKAAVGWGVAAATGGLYLVQ
Sbjct: 1  MVGASSTGMFKFLKPTMRPQTTDIKAAVGWGVAAATGGLYLVQ 43
[Close]
BLAST of Spo04254.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CZV4_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g038800 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 2.000e-11
Identity = 35/43 (81.40%), Postives = 40/43 (93.02%), Query Frame = 1 

		  

Query: 27 MVGASSTGMFKFLKPTMRPQTTDIKAAVGWGVAAATGGLYLVQ 70
          M GAS++GMFKFLKP+MRPQ +DIKAAVGWGVAAAT G+YLVQ
Sbjct: 1  MAGASASGMFKFLKPSMRPQPSDIKAAVGWGVAAATAGIYLVQ 43
[Close]
BLAST of Spo04254.1 vs. UniProtKB/TrEMBL
Match: A0A0V0GX45_SOLCH (Putative ubiquinol-cytochrome c reductase complex 6.7 kDa protein-like OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.100e-6
Identity = 25/40 (62.50%), Postives = 34/40 (85.00%), Query Frame = 1 

		  

Query: 30 ASSTGMFKFLKPTMRPQTTDIKAAVGWGVAAATGGLYLVQ 70
          A+  G+FKFL+P +RPQ+TDI+AA GWGVAA TG L+++Q
Sbjct: 6  AAGNGLFKFLRPKLRPQSTDIQAAAGWGVAAVTGALWVIQ 45
[Close]
BLAST of Spo04254.1 vs. UniProtKB/TrEMBL
Match: M1BUD9_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400020601 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.500e-6
Identity = 25/40 (62.50%), Postives = 34/40 (85.00%), Query Frame = 1 

		  

Query: 30 ASSTGMFKFLKPTMRPQTTDIKAAVGWGVAAATGGLYLVQ 70
          A+  G+FKFL+P +RPQ+TDI+AA GWGVAA TG L+++Q
Sbjct: 6  AAGNGIFKFLRPKLRPQSTDIQAAAGWGVAAVTGALWVIQ 45
[Close]
BLAST of Spo04254.1 vs. UniProtKB/TrEMBL
Match: K4BIZ6_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.500e-6
Identity = 26/43 (60.47%), Postives = 33/43 (76.74%), Query Frame = 1 

		  

Query: 27 MVGASSTGMFKFLKPTMRPQTTDIKAAVGWGVAAATGGLYLVQ 70
          M  A+  G+FKFL P  RPQ+TDI+AA GWGVAA TG L+++Q
Sbjct: 1  MTTAAGNGLFKFLSPKRRPQSTDIQAAAGWGVAAVTGALWVIQ 43
[Close]
BLAST of Spo04254.1 vs. ExPASy Swiss-Prot
Match: UCR11_SOLTU (Ubiquinol-cytochrome c reductase complex 6.7 kDa protein OS=Solanum tuberosum PE=1 SV=2)

HSP 1 Score: 61.2 bits (147), Expect = 1.000e-8
Identity = 25/40 (62.50%), Postives = 34/40 (85.00%), Query Frame = 1 

		  

Query: 30 ASSTGMFKFLKPTMRPQTTDIKAAVGWGVAAATGGLYLVQ 70
          A+  G+FKFL+P +RPQ+TDI+AA GWGVAA TG L+++Q
Sbjct: 6  AAGNGLFKFLRPKLRPQSTDIQAAAGWGVAAVTGALWVIQ 45
The following BLAST results are available for this feature:
BLAST of Spo04254.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 4
Match NameE-valueIdentityDescription
gi|902160354|gb|KNA06435.1|4.3e-15100.hypothetical protein SOVF_1811... [more]
gi|870866446|gb|KMT17428.1|2.9e-1181.4hypothetical protein BVRB_2g03... [more]
gi|1351365|sp|P48505.2|UCR11_SOLTU1.6e-662.5RecName: Full=Ubiquinol-cytoch... [more]
gi|293336024|ref|NP_001169741.1|3.7e-662.2uncharacterized LOC100383622 [... [more]
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BLAST of Spo04254.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9QGT9_SPIOL3.0e-15100.Uncharacterized protein OS=Spi... [more]
A0A0J8CZV4_BETVU2.0e-1181.4Uncharacterized protein OS=Bet... [more]
A0A0V0GX45_SOLCH1.1e-662.5Putative ubiquinol-cytochrome ... [more]
M1BUD9_SOLTU1.5e-662.5Uncharacterized protein OS=Sol... [more]
K4BIZ6_SOLLC1.5e-660.4Uncharacterized protein OS=Sol... [more]
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BLAST of Spo04254.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
UCR11_SOLTU1.0e-862.5Ubiquinol-cytochrome c reducta... [more]
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BLAST of Spo04254.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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