Spo04524.1 (mRNA)

Overview
NameSpo04524.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
LocationSpoScf_01869 : 44272 .. 48222 (-)
Sequence length525
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGGAAAAAGAGAAAAGCATTTGACACGTCATCAGTGTACAAAATCTGACAGACGAGATGTTGTTCCGTGCAAGGAAAAACAGTACTATGTGCGATGCATCAGACAATGGTAAGAAGATACTGCAATTGCGCTGTGCATTTTGCTACACTTACAAACTCGATTATTGTGCAACTATGTTTCTGTTTTTTTTTTAAATAAGGTGTTTTCTTCGGCGAGTAGTTATCCTCGTGCTTCTGAAGTGGAACTTGCACAAGCCTTTCCCTTCTGTCGAATTTTTTTGATTGCAATGAGAGCAATTTGACTGTGCAAGCCTGCCCATGTATTGTTAGATTCTTATGTTTCTTTGAAGATGAATAGAGTAGGATGATATACCTGGGTGTCTAATTGGAGATAGTGAGATACTTGGCATGTTTCCTTGATTTCTCCGAACAACTGAAATTTCTTGGAACTATGAGGTAAAAAGCTGGTTTTTGTCTTGATGTTATCTATTTGCCAGTGTTCATTTGGCTCACTTTCTTAACCTCTTTGCTGCTTATATTGTAGTGTGTAGGCTGTTTTTCTGTTTGGTAAAGAGTGATAAAGATAGTAAGTTTTCCTGATAGTTTTTTCAAGTATGTTCTGTAACACCACTGCAGTATTAATGTGAAGGCGAGAAGCTGTTTTCGAAGTGTGGCAGAGACAAAGCAAGAGCAGAAGAAACATGAACCAAATAAAGTGACAACTTAGATATTGCTCAAATTACTCGTCTACCAAGATTTCAGAGCCTGAGAACTATCCAGCTACAGGTATTTTTGTTCCTTGTGATCTCCTTTTCTCTCTTGTTTTTTTCCTGAATTCATTTGTTGTAGCGATTGCTTTTAAGCTATTCTTAGACATAGATAACTGATGTTTTGTGATGCATTCATACTATGTGGTAAATGGATGTGTGAGATTGCCGATCATATGAAATTTGATGACGACCCTTAAGAAATAAGTGGGCTTCACAGTCCTAATTACATAATACTTAGATACAAACTCTTATGTTAGTGCTTTATGATAAGTTGCATTGTCATGTCTATTAGGTTCTCGTAATCAATTATAATTCTACATTCCTGCTTAATGGGAGGGAAATGGTATGAATTGAGATGGGCAACTACTTGAACTTGCAGTTTACTTCTAAAGAATAGAGTAGATCAACTTGTGCATCTGTGATATTCTTGCAAATTGTGTTTGCCAATCTTGGGATGTTAAGGATATAACCTCATTTATAAAATTGTGTTTACATGAGTAGAAGTTGGGTAGCTGTGCTTGGTAGGAATTCATGGATGGCCATCCAGTAAGCTTTTGAAAATTTTGACTATCTTCGTGAATGAAGAGTTAAAACGAGATGCCTGTTTGTTCCTCCATTGGCTAAGGACATAATTTTTCAGTGCCCATTGTAGGTTTACCTCAGTTGGAACTATGTATCTAGAAGTGGCAGCTTGGGTTGTGATGAACATTCTCAGTGGCTGTGATATTTTTTTTTGGACCCTGTTTCCCGTCAATTTTCTGAGGAATATCGTTATGGAACTCATGTTTTCAGCTCAATAAGATCATATGCTAGGTTTATCTGTTTTCTTTCCCTTGTTTAGGTGTGGAATTAGGGGCTCATTAGCATGGGTTCCACTTCCCCACCCCCTTCCTTCCACCACATATGTTTGGGAAATGATAAATCCAAGAAAGAATTTTACTTCATCCAAGGAAATCAACTTTAAAATAATGTGGATTTCCTTGGAAGAAGTAAAATTTTCCTTGGATTTATCACTTCCCCATATGTTTAATTCTATGCCACCATTAATTTTGAATTTTAGTGTAATAGGAATATTCGAGTAATGAAAGAAGTGGAGTACTACACATTCAATGATTCAAAGATATAAAGAAGTATTACTCGTCCTTCAATGACCTTGTTGTAACAATAGACAAATTTTGAGGCATTAGTGGTACTTCAATATTTCTAATTTTCTCGTCTTTTGTGACATTGACGGAGATCGTAGTTGTCAAATATTAAAGTTTGTTGTTATTTGTGATGTAGGAAGAGGATGTTGCTCCTTTGGAGAGCATGTTTGGCGAAAGATAATTTTAACGCAAAATTAGTAATTATCGTCTTCAAATTCAGATCAAGAAGGGTGAAGCACGGAAGAAGGATGTAAAATTTAGTAATTTTATTAGTTTGCCGGAAAAAATACTTAATTATTTATAAGTAAGAATAATTCTTTAAAATAGTAGTTTGAAAACAACTTAGTGTATATATTAAACTTTTGTGGACAAAAAGGAGAAGGTAGTAACATTGATATACTACCAAACATCATGTATCCTAAAGTTGTCTAAACTTGAAAGCTTCATTTTTCTTTTCATGGCCATAAAACCTTAAATGATACATTATGATATTCTCAATGCAGACTTATCCTCCAAAGATGAACTCAATGGCAATTCTCCCTCTTAACCAAGTGAATGGCTGAATAACGTTGACAGAGGATAGCTTATCATTGACGTGTTTTTATTTATTTCATAAGCATTTTTTGTTGCTGTTACAAATATAGCAACTCTTTAAGCTCATGTCAAAAAAAAAAAAACAAATATAGCAATTAAGAAAATTATAANTCTTTAAGCTCATGTCAAAAAAAAAAAAACAAATATAGCAATTAAGAAAATTATAATTTCACAAAATATGATTATTCATATTTTAATAAAATCAATTTCAATACCTTGGGGGACGGCCAACAACTAGTTAACACAAAAACTTAAAATATGACGGTGTTAATATCTTACCATATCACCTTATTTTGGTTATACATTTTCTGTTTGATTAGGATAAACAATAATGCCTACATCATCACTAGTTGTTTTAAGAGGAAGAACTAGTGTTCGGTCGGGCGATGCTCCGGGTTACTAATTTGAACATCGATATATTTTGGTAAGCATTATGAAAAAAGTCGGTGTATATTATACACTTAGATGTTCCAAGTTACATGTATTTATGTGCAATTAAGATCATATTTAATGGTTGGCTAATATGGTAAGATATGAACCTTATTGTGTTATCGGAAAGTATTAAGTATTAACAAAAAACACTTGAATATGACGGTGGTAAGGATCCGTTATTCGACTTATTTTGACTGAACTTATATTATCTTATTTTATCTGAAAAAAACTTATTATTTTGTCTGAAATAAAAGTCACAATAAGCCGAACGAAACAGAACCTAATACTTGATACTTTCCGATCACAAATTATCTGATGATGACGAGGAAGAAGTATTAGCCAATTGGACGGCTTTTCATTAAGTGTCTGCAAACCGATATCGAGAAGGAACATAAAGCACCCGTACGGCGGTACTTGACCCAAAGGCACCTTATTTTCTACTAAAACTCTTAACGAACATTACGGTTATTCTAACAAACACTTGATTAATTTTATTCATATTATATAAAATAAAATAAATAAAAATAAAAATTCTATTGGTTTAAAATTGGATGTGTGTCTATATATATTAATATTNAAATAAATAAAAATAAAAATTCTATTGGTTTAAAATTGGATGTGTGTCTATATATATTAATATTGTTACGTACACTAAAATTTACCTTTATCAATAATCAACAAAAAGAAACAAGAAACAAGAAATAAAAATGGCAGTGGATGGAGTTGGGAAGATATTAAGAAATTCGAGGAATGTGTTGCATCGGTGCAGTTTAACGGCATTGATGGTGAGTCGCGGTGGGAGGCTATTTCCGACCAGCTTGGAGGAAGTAAATCAGCGGCGGAGGTGGAACTCCAATACCGGAAAGTGATTTTTGACGTCGAAAGCATTGAAGAATACATTGTCCCTCCACCTCCGATCATAAATGGGGGTCCATCGAATGCAGTTGAACACAATACGGGAGTGAGTGGAGTAGGGAAGAAAACAGGCAGTTTGAACAATGTCTAG

mRNA sequence

ATGGCAGGAAAAAGAGAAAAGCATTTGACACGTCATCAGTGTACAAAATCTGACAGACGAGATGTTGTTCCGTGCAAGGAAAAACAGTACTATGTGCGATGCATCAGACAATGCTACAGGAAGAGGATGTTGCTCCTTTGGAGAGCATGTTTGGCGAAAGATAATTTTAACGCAAAATTAGTAATTATCGTCTTCAAATTCAGATCAAGAAGGGTGAAGCACGGAAGAAGGATTGGATGGAGTTGGGAAGATATTAAGAAATTCGAGGAATGTGTTGCATCGGTGCAGTTTAACGGCATTGATGGTGAGTCGCGGTGGGAGGCTATTTCCGACCAGCTTGGAGGAAGTAAATCAGCGGCGGAGGTGGAACTCCAATACCGGAAAGTGATTTTTGACGTCGAAAGCATTGAAGAATACATTGTCCCTCCACCTCCGATCATAAATGGGGGTCCATCGAATGCAGTTGAACACAATACGGGAGTGAGTGGAGTAGGGAAGAAAACAGGCAGTTTGAACAATGTCTAG

Coding sequence (CDS)

ATGGCAGGAAAAAGAGAAAAGCATTTGACACGTCATCAGTGTACAAAATCTGACAGACGAGATGTTGTTCCGTGCAAGGAAAAACAGTACTATGTGCGATGCATCAGACAATGCTACAGGAAGAGGATGTTGCTCCTTTGGAGAGCATGTTTGGCGAAAGATAATTTTAACGCAAAATTAGTAATTATCGTCTTCAAATTCAGATCAAGAAGGGTGAAGCACGGAAGAAGGATTGGATGGAGTTGGGAAGATATTAAGAAATTCGAGGAATGTGTTGCATCGGTGCAGTTTAACGGCATTGATGGTGAGTCGCGGTGGGAGGCTATTTCCGACCAGCTTGGAGGAAGTAAATCAGCGGCGGAGGTGGAACTCCAATACCGGAAAGTGATTTTTGACGTCGAAAGCATTGAAGAATACATTGTCCCTCCACCTCCGATCATAAATGGGGGTCCATCGAATGCAGTTGAACACAATACGGGAGTGAGTGGAGTAGGGAAGAAAACAGGCAGTTTGAACAATGTCTAG

Protein sequence

MAGKREKHLTRHQCTKSDRRDVVPCKEKQYYVRCIRQCYRKRMLLLWRACLAKDNFNAKLVIIVFKFRSRRVKHGRRIGWSWEDIKKFEECVASVQFNGIDGESRWEAISDQLGGSKSAAEVELQYRKVIFDVESIEEYIVPPPPIINGGPSNAVEHNTGVSGVGKKTGSLNNV
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo04524Spo04524gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo04524.1Spo04524.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo04524.1.CDS.4Spo04524.1.CDS.4CDS
Spo04524.1.CDS.3Spo04524.1.CDS.3CDS
Spo04524.1.CDS.2Spo04524.1.CDS.2CDS
Spo04524.1.CDS.1Spo04524.1.CDS.1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo04524.1.exon.4Spo04524.1.exon.4exon
Spo04524.1.exon.3Spo04524.1.exon.3exon
Spo04524.1.exon.2Spo04524.1.exon.2exon
Spo04524.1.exon.1Spo04524.1.exon.1exon


Homology
[Close]
BLAST of Spo04524.1 vs. NCBI nr
Match: gi|731366237|ref|XP_010694960.1| (PREDICTED: transcription factor DIVARICATA-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 59.3 bits (142), Expect = 7.700e-6
Identity = 28/65 (43.08%), Postives = 42/65 (64.62%), Query Frame = 1 

		  

Query: 80  WSWEDIKKFEECVASVQFNGIDGESRWEAISDQLGGSKSAAEVELQYRKVIFDVESIEEY 139
           WS+ + K FEEC+A   F+  D  +RW  I+ +LGG ++ AE++  Y ++ +DVESIE  
Sbjct: 14  WSFTEDKLFEECIAEGYFDIEDESTRWLQITTKLGGKRTPAEIQNHYYELAYDVESIEND 73

Query: 140 IVPPP 145
            VP P
Sbjct: 74  RVPLP 78
[Close]
BLAST of Spo04524.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BDL0_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g096530 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 5.400e-6
Identity = 28/65 (43.08%), Postives = 42/65 (64.62%), Query Frame = 1 

		  

Query: 80  WSWEDIKKFEECVASVQFNGIDGESRWEAISDQLGGSKSAAEVELQYRKVIFDVESIEEY 139
           WS+ + K FEEC+A   F+  D  +RW  I+ +LGG ++ AE++  Y ++ +DVESIE  
Sbjct: 14  WSFTEDKLFEECIAEGYFDIEDESTRWLQITTKLGGKRTPAEIQNHYYELAYDVESIEND 73

Query: 140 IVPPP 145
            VP P
Sbjct: 74  RVPLP 78
The following BLAST results are available for this feature:
BLAST of Spo04524.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 1
Match NameE-valueIdentityDescription
gi|731366237|ref|XP_010694960.1|7.7e-643.0PREDICTED: transcription facto... [more]
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BLAST of Spo04524.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0J8BDL0_BETVU5.4e-643.0Uncharacterized protein OS=Bet... [more]
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BLAST of Spo04524.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo04524.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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