Spo04593.1 (mRNA)

Overview
NameSpo04593.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
LocationSpoScf_00926 : 12622 .. 16067 (-)
Sequence length600
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATACAAAGAGCTACGTGAAGGTTCTCTTGCTTACCGTTGCGATCACCATGATCGCGGTGGCCAAGGACGCCGCGGCGCAGGATGTATGCAAAGGAATCGACGAACGTTGCTTTGCCGATGCAGACTGTTGTCCGGGATCTGCTTGCCACGGACCGATAGTCTGGCACTATACCACTTGCTTTTCGTGCGCAGGGAGCGGGGCTTATTGCAGCGCCTTTACCCCGTGTTGCCCCGGTTACTCATGCAACAACATATTTGGTGGTTCATGCTACATTTAGACCCGTGCGATGCACTTGCCTTCATATATACATGCTTTTGTTTGTTTCATTTCCTGAATGTTTGTTTGATTAAGTACTGTAATACGTAGTAAGTCTGTAATTGGACCTTTCTAGCTAGCTAGGTCTTTACATATTTATACGTACTAATTATAATTTTTACATTGCTTGAGAAATTATATCTATGTTAAGTTTGAATTTTATCCGCCAACAAGGTAAGTTTGTAGCTAAGTTTGCTGCTGTTGGTGTTATCATCATCGTTGCTTTTATGATGCAACCAACAAAGTAGAGTTAGGTACGTGACGGGCCGTGTAGGTACGTTCATGCACGTGCCTTTTACCCTAATGGTGCCTAGAAGGTCCAAGGAAAAGTCATGTTGTATCGGGCTCGTGCCTCTCTTATTCCATAAATAAGGTCCATATATGCATGGCCTGTCTCACGTGTCGTGTCGGGCTTGGGCAGATCTTGTCGTGCTAAAGGCTCCCTTACTAATTTTAAGATTTTTCTATTAAGTTTGCCGACATGCGTTACGGCCTGTAGTGCTCGTGTCAAATTTATAAAATGTTGTTCATACAAGACCATGACCATCGCCATACCTCTCAGATCATGTTGTGCCGTGTTTACAACGGGCTTGTGCCGTGCTCGACCAATTTTGATCGAGCTTGGCCGGGCTGCCCGCGTGCTGGCCCTCTCTATGGTCATTGCCATACCCATGTCCAACTCTACGACTAAGGTGGTTGACATCACCAAGCAAATTAACGAGTAATGAATTAAGCTTGTTATTGGCTAGTTTCTTTTATCAAAAAAGGCATTATTTTCATTAACCAACCCAAAGTCAACTAACATGGACGTACAATTGAATAATTGATCGAAGATCCACTGCAAATATCACATTATCTTAAGAGTTTGGTTCCAAACTCCATTTCAAACTAGTGATAAACTCACCTAAAGAAATAGAAAAAACAGAGCTAGCGAAAGAGGAAGTCAAGATTGGAAAGTTGGTCAAATCGACTCAAATGGCCTAACGAGACCGACAAGTACATTTTTGAGGGGGAAAATACTGTAAAACGTCTCACAATTTTAACCCATATCTTCAAATTGCTACCCCGTATGAAAATAGAAAATTTATCCAACAAAATCCAAAATTAGGTTATGGTGATACTTTTATAAGGCAATTGACAATGAATCGAATATGACTCAACCCAATCCGTATCGACCCAAACCCAAAATTCACCCGGTTTATTCTTATTAGAACTTTACCTGACTCGAATTGACCTGACTTAAATAACTCGATTGCCACCTCTATAATGGATACTTCATAGTTCGCGAGCTATGACTCGACTCGACTCGACTCGTCAGATGTCTCCCGTCCATGAGCAGAAACCAAAAATTGGGTCCATCATAAATTAGTGAATTATGATAACCGGTTCAATTTCCTTGACTTTTTTCCTATTTTATCTTTTACTATAAAATACATGGATAATTTTACAATAGCTACATTAATTTGGTAGCCACTACAAGCTTTTAATCTCGACCTTATATTTTGATACACGAAATCTACACCATTTATTTTTGTTGACTTGACTTTTGAAGAAAATTAAAAATTAAAAATTAATTAACCTCCATAAACGGTTTGTTTTCTTTTTAAGAAGATCTTAATAGTGCGTTGGTTCTCAAAGTATGATGATTTGTATTAATACGGGGTGATTGTTGGGTGGATGAGAGAATATGATGAATAACGATGGTAGTATTTGATTGATAATGTGGTTTTGAATAACTGTGCCTTTTCTTTTCTTTTTCTTTTTTTTGAAACGCAGTTTTTTGTTTTTGTTTTTTATTTTTTATTTATTTTTATGATTAAATAAATAAGCGGATTAGATTTATTCTTAAAATTAAAGGGTTGAGATTTGCTAAAATTATGGTGGCTACCATTTTATTGTAGCTATTGAAAAACCTTCCAAAATACATTTACAAACACACATCAGATATCCAAAAATACTTCCTTAATTACAAGCCTAGACTCCTAGTCAATGTATACAAGTCGTATGTTAATCTCCAACCACAAACAAAACAAATAAAATAAAAAATCGGAGGAATTCAACGTTTGTGTTTGAAATTAAACCAACGAATCAAATATTCTTCCCTCTTTCTGGGTTTCTCCCTTCTTCCTTTCTCCTCTTCAAAAACCTTCTTCCCTCTTCCTGGGTTTCTCCCTTCTTCCTTTCTCCTCTTCAAAAACCTTCTTCCCCTTTCTCTCTCCTTGCCTCCACGACGAACTTCGAGGGTTTAATTTTATGGATCCTTCCGTCTCCAACGATTCTCAGCACTGCAATTTCTTCAAATCTCTCTTTTCTAGATTCACGCCTTGGTTTCGTTACCTCCAGTTTAGGTTTCCGGTTTAGATTCTTTTACCGATTTTATTTTTCGGTTGATTATTTGACGCTCATTCAGGTATTAATTTCGAATTAGCACTTTATGATGATTTTTAATGGAAATATGCAAGCTTATTGATGCTAAATTTTTGCAAATTTGTTTATTAGTGCTTTGATTATATGTTTTATTGGCAATTGATGATGGAAGTACTGTTATCTGAGATGATTAATCAAAATTGAGCATTTTTATAAAAAAAATTATCAGTTTAATTACTGTTTATTTAATCAATCTATAGCAAAGTTTAATGTTAACCATGTTTAAGCTTAATCACTGTTTGATAATCAAATTTGATCAAAATTTCTGATTCTTCCAATTCGTTCTAGCTCAGCTGTTGTCTTGGTAGCCAAAATTCACCAAATTTAGTACCTTTATTGCTTGTTTGAGTTATTCCTTACTCCTTGTATAAACTTTTAATAATGGGTATATATCAATAACTAAAGGACGAAATTTTACGGGATTTTGGTCGCTAGGATTTGTTAGTTGAAAGTTTGAGCCACTTCGGAAAATTGGAAGTTGTAACTTTGTCTTGAATTTGTTTGATAATAGATAAAGTATTGAAAATTTCAGGATTTGTATTCCTACTTAGTTCAAATAATTTAATAATCATATGCCATAATGTTCACTACTTCACCGTAAAATTCGTCGAATTCATATTTCTATTCATACAACATAATGCAGAGTTTTAAGACTGCTTTTATGTATTATGTGCCGGTTTTCAGGTTGTATTGTTGTAG

mRNA sequence

ATGCATACAAAGAGCTACGTGAAGGTTCTCTTGCTTACCGTTGCGATCACCATGATCGCGGTGGCCAAGGACGCCGCGGCGCAGGATGTATGCAAAGGAATCGACGAACGTTGCTTTGCCGATGCAGACTGTTGTCCGGGATCTGCTTGCCACGGACCGATAGTCTGGCACTATACCACTTGCTTTTCGTGCGCAGGGAGCGGGGCTTATTGCAGCGCCTTTACCCCGAATTCAACGTTTGTGTTTGAAATTAAACCAACGAATCAAATATTCTTCCCTCTTTCTGGGTTTCTCCCTTCTTCCTTTCTCCTCTTCAAAAACCTTCTTCCCTCTTCCTGGGTTTCTCCCTTCTTCCTTTCTCCTCTTCAAAAACCTTCTTCCCCTTTCTCTCTCCTTGCCTCCACGACGAACTTCGAGGGTTTAATTTTATGGATCCTTCCGTCTCCAACGATTCTCAGCACTGCAATTTCTTCAAATCTCTCTTTTCTAGATTCACGCCTTGGTTTCGTTACCTCCAGTTTAGGTTTCCGGTTTAGATTCTTTTACCGATTTTATTTTTCGGTTGATTATTTGACGCTCATTCAGGTTGTATTGTTGTAG

Coding sequence (CDS)

ATGCATACAAAGAGCTACGTGAAGGTTCTCTTGCTTACCGTTGCGATCACCATGATCGCGGTGGCCAAGGACGCCGCGGCGCAGGATGTATGCAAAGGAATCGACGAACGTTGCTTTGCCGATGCAGACTGTTGTCCGGGATCTGCTTGCCACGGACCGATAGTCTGGCACTATACCACTTGCTTTTCGTGCGCAGGGAGCGGGGCTTATTGCAGCGCCTTTACCCCGAATTCAACGTTTGTGTTTGAAATTAAACCAACGAATCAAATATTCTTCCCTCTTTCTGGGTTTCTCCCTTCTTCCTTTCTCCTCTTCAAAAACCTTCTTCCCTCTTCCTGGGTTTCTCCCTTCTTCCTTTCTCCTCTTCAAAAACCTTCTTCCCCTTTCTCTCTCCTTGCCTCCACGACGAACTTCGAGGGTTTAATTTTATGGATCCTTCCGTCTCCAACGATTCTCAGCACTGCAATTTCTTCAAATCTCTCTTTTCTAGATTCACGCCTTGGTTTCGTTACCTCCAGTTTAGGTTTCCGGTTTAGATTCTTTTACCGATTTTATTTTTCGGTTGATTATTTGACGCTCATTCAGGTTGTATTGTTGTAG

Protein sequence

MHTKSYVKVLLLTVAITMIAVAKDAAAQDVCKGIDERCFADADCCPGSACHGPIVWHYTTCFSCAGSGAYCSAFTPNSTFVFEIKPTNQIFFPLSGFLPSSFLLFKNLLPSSWVSPFFLSPLQKPSSPFSLLASTTNFEGLILWILPSPTILSTAISSNLSFLDSRLGFVTSSLGFRFRFFYRFYFSVDYLTLIQVVLL
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo04593Spo04593gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo04593.1Spo04593.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo04593.1.CDS.3Spo04593.1.CDS.3CDS
Spo04593.1.CDS.2Spo04593.1.CDS.2CDS
Spo04593.1.CDS.1Spo04593.1.CDS.1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo04593.1.exon.3Spo04593.1.exon.3exon
Spo04593.1.exon.2Spo04593.1.exon.2exon
Spo04593.1.exon.1Spo04593.1.exon.1exon


Homology
[Close]
BLAST of Spo04593.1 vs. NCBI nr
Match: gi|870863835|gb|KMT14982.1| (hypothetical protein BVRB_3g064870 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 60.5 bits (145), Expect = 3.900e-6
Identity = 34/71 (47.89%), Postives = 44/71 (61.97%), Query Frame = 1 

		  

Query: 1  MHTKSYVKVLLLTVAITMIAVAKDAAAQDVCKGIDERCFADADCCPGSACHGPIVWHYTT 60
          M+TK Y  VLLL   ++++  A  AAAQ  CKGIDE C  D +CCPG+AC     W++  
Sbjct: 6  MNTKKYYGVLLL---LSIVMAATIAAAQS-CKGIDESCGLDEECCPGTAC-----WNWNR 65

Query: 61 CFSCAGSGAYC 72
          C  C G+GA C
Sbjct: 66 CIGCPGAGASC 67
[Close]
BLAST of Spo04593.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CN75_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g064870 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.700e-6
Identity = 34/71 (47.89%), Postives = 44/71 (61.97%), Query Frame = 1 

		  

Query: 1  MHTKSYVKVLLLTVAITMIAVAKDAAAQDVCKGIDERCFADADCCPGSACHGPIVWHYTT 60
          M+TK Y  VLLL   ++++  A  AAAQ  CKGIDE C  D +CCPG+AC     W++  
Sbjct: 6  MNTKKYYGVLLL---LSIVMAATIAAAQS-CKGIDESCGLDEECCPGTAC-----WNWNR 65

Query: 61 CFSCAGSGAYC 72
          C  C G+GA C
Sbjct: 66 CIGCPGAGASC 67
The following BLAST results are available for this feature:
BLAST of Spo04593.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 1
Match NameE-valueIdentityDescription
gi|870863835|gb|KMT14982.1|3.9e-647.8hypothetical protein BVRB_3g06... [more]
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BLAST of Spo04593.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0J8CN75_BETVU2.7e-647.8Uncharacterized protein OS=Bet... [more]
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BLAST of Spo04593.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo04593.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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