Spo04653.1 (mRNA) | SpinachBase

Overview


Name	Spo04653.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	Translation initiation factor IF-3
Location	SpoScf_02953 : 30972 .. 37246 (-)
Sequence length	1467

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAGAAGAGTATTTCAATTCCGTAATGCAAGGACAAAGCGGAGGAGAGACGAAGAAGAGACTGTGTGTGTGGATAAGGCCATTTCTGAAGAGAAAGAAAAAGCGCCACACCCAAAAAAAACCGGCGCCTACAAAACGCCTACAATGGCCGCTACTCTAGCTGCTACTGCTGGTGGCAACATCCTAACTCCGCCATTGTTATCCCGTCTCAAGCTCAAACCTCCGCCTACCTCGCTCCTATCTCTCTCCCCTTTCCAGTCAAATCTCTTTTGCCTTCGCCTTTGCATTTCTACTTCCAATTTTCAATCTTTTCCACTTTCTCACTCCTCCTCCTCTCACCTCGTTTCCGCCTCCGGACGATATTCCGGGAAGAGCTCTGATGATGATCAACCTCTCGATATATCTTCCGTTAGGTTTTGCTCTAATTTGTTATTCTTGTGCTTTTTTTTGGTTGTTGTTGAATTTTATTGGTTTATTTTTAGCTGAATTGTTTGATTTTCTTTTGGAAATAGGTCAGATAAAGTTAGGCTAATTGATGAAAAGCAAAATATGGTTAGTTTTCGGACTTTAATTATGATAATTGTATTGTTTAAATTATTTTTACTCTCCGTATATGGTTTTGGTGATTATTGTGAAATTGAATTGAATTAGATTGGAATTGTATCAAGAAATGAAGCAATTCGAAGAGCTGAGGATTTAGAGCTTGATCTGGTATGGTTTTTTTATTGGTTAATTATCGATTTCTACTTATTTTTTTTTAATAGTGTTGTGCTATTTCCGTTCCTGAAAGTTCTTTACGCCTTGGCATATGTGTCTGACCGTAAATTCTCACAATTATATACCGAGTACATCAAAACGTTATTACGTTGTATCTTATAGATTGCCAGATTGGTCTCTCTATTTTAATAATATGAGCTTCTTATATTTTTTTCACATATGGAATTGGATTAGTGGTTAAAATTTGTATTAGAGTCTGTGCAAATAGTAAGTGGAGGTAGTATATGTTAATTTAGTACACTTGTTTGCAATGTTGTGCTCGGATTATGCAACTTACTTTGAAAGAGGAGTATTGGTTTAGAGGTATTTGGGGTGAAATGCATGAGATTCTGCACTACATGTTATTTACTATTGCGCAATTCCCCCTTGCTTCGTGATTGGCTCATATGTTGTAAACTTGAACTAGTATGTATGTCTATATGTTAAAGTTCAGAGTACCGCGAAGTATAATTTCCTAGATGTATTGAATTCGTGCAAAGAAATATACTTCGTACAATACAAGGGGAAGGAAGCTATAACTAAACCTATCACGCGCCTAAACTAAGTAGTTTGCAACTCTGAGGAAACTTTACGAACACAAAATGTTTCCTAAATACACTAGACTTTACAAACTCTAGACTTTCTAATACAGTACCTATTTGTGTTGTTGCACGTGCTTGTATTCGTACTCCCTTCCTCCCAAACAGTTTGTTCATGCTTATGTAAGAAGTGTAGGCGTGTAGCAAATGAGTAGGATTTAACCATAGTGGTGTAGTGTATGGTATAGTGAGAGCAACATAGTTTGATGGGATGAATACATGTTTATTGAATATATTTAAAACGGGACAAGTCAAATAGAAGGATTGACAAGATCTGTGGGAGTGAGGAGTAGTGGAGTACACTCCCTGAAGAACATGTTGACAAGAGATGTTCATCACCAATTTGCTCTGTTTCATGGGTACTAGTTGCCAAAGGTTGCCACAAACTGTTTGTATCTACTTCGGATTGAAGTACGTCGTCTTAATGAGTTTCTGATTGTCTTAAACACTTTGATAGTTATGGTATTTAACTCAGTTTCTGAAAAATTGACCATTAATCTAACGTGGCCTATTATTACGAAGAAGAGAGAGTACTAGGTAATTGTTACTTATATAGCGTGACGATTTAAAATTAAATACAAGGCCCCCCAAGCCTATCCACATACGGAGTAATAGTCTATCTGAAGTTCTGAACCACGAGGTTAGCATAAGTGGGACTTGAAAACACCTAACAACCTTAGAACTTGAATTGTAAAGCTCTAAGGTTGGAGCCTTAAAGTAGGGGTCTTTCTCTAATTTTGTGCTGCTGTAATCCATGTTACACAATCATGTGACTGTAAGACTTGTTTGATGTATCAAATATGGATACATCTTACTTATTGTGTTTTCCTGTTATCTTTTAATGTTCTAACCAAGTATCCTTTATACATTGGAGGTGCCAAGAGTCTGTATAACAATAGATAGGCAAGGTTGTTTAGGAGATTTAACAAAGGGGTAATGTCTAACCTTATTAATGGTTTGAAAACTTATCCCATTAGCTACTACAGGAAAAAATTTGGACCTCATAGGAAAACTGGGGGAAGGAGGGTATTTATGAAAACGTAATAATTATGTGGCCCATAATTGACTGGAGGAGTTTCTGTTGGGACAGATTTCCCAATAGTTACTTTTGGTCTGTTCCTCGGAGCAAAAGTTTCAAGCTAGTGGGAGTTTGCTTGGAGCATCACATCATTTTAGAATCAGTATCAGTGTATCATGGTTCTGTTATTGGAGAATTGTCATGTTTCCCCTTGTGTACAGAATGGCAATTTGATGCCCTTCAATGACTCAAAAGTATATTGAATATATAGTTGTATTACTTGTATACGAATATAATTTGGTCCACCTTAGAGATAAATGATTTATAAGGCTAAGCTAGGGCTTTAACCTTTTAAAGATGTCATATATTCTGTGACCTAACTGACCTCCGACCTTTTTTGTTGGAATATCAAATTTAGATGCACTTATGGATTTATTGTGTGACTTTCTGCAGTCTTTCTGCACACATTGAAGTTTTAAGATTGCAATGTGCATGATTGTGCAAGGGAGGGAGATTCAGTTCTCTTTTTCTTTAGAGTGATATATGTTGATGGTGGAGGGTGTTTTATGATTACTCAGCAGACGACGAGAGTGTAGGATTAAAGACATCGAGGTAAAGGGAGGAGATAAAGGGAAAGAACCGGTAGAAAAGAGATAGGAACTGGGAGGGAAAGTAAGGGAGGAGGTGCCATTCTTTTGCCTTTGGGATGCAAGTTGCAACCCTCCTTTTCTTTACCCATTTGGTCATGGGTTTATGAAATCCAGGTTTTAAAGTCATGTAGTCTTAGTTTAGGGTGTTGGAAGGATCAAGAGCACTCCGTATTAGACTAAAGATTTCAAGCATAATATTTACATACGCATATCGATTTAGAAACAGAAAATTTTACTCGTACGTTTTGTCAACTTGATCTTGCATATAATCCAACTGGACTCCCCCATGTTCAAAACAGTGTGGTGTGCCGGTGTTAGGGTTCTACTATATTTTTGATCCTCGACTTGCTTGTCTTCAGCCTCTCAGACCAAATGGGATTTTTCAAGTAAATAATAAACTTTTTTTTCCTTGCTGGATTTGTGTTGATTCTGCTGGCTTAGCCTAATAGCCTTGTTAGCTATTCTATTTGATAATTAGTGCTACATTGATTATGTGGTTAATAATTATTCCAATTTTTGTAGGTGGTGGTCTCACCCGAGGCAGATCCTCCTGTTGTCAGAATAATGAACTATGAGTACGTTTTCTTTTCCTTCATGGTTCCGTTGGTTCCTCCTTCTGAATAAGAAATTCCATTGCTCCATGTAGATCCACTGGCATTATTCCTTCTAAAATATTTTCACAGAAACAGTTCAAGGGCGAATGGAGACTGGCGTTCTGGTTTGGAAGTTTGCATATTAGGCTATTAACAAGAGTTGACATGGAAATGTTTTTTGTTTAATTGTGCTGTACTGCTGTGCATCTTAGCAACCTTGTGTCACCTGTTTATTTTTATTTTTATTTTTTCTTATTCTGTGTCATTTCCTTTTGTTTCAGTAAATTTAGATACGAACAGCAGAAGAAGAAAAGGGAACAACAGAAGAAAAGTGCTGGTGAATGACTTATCTATCTAGCATTTACAGTAGCCTTATTCATATATCTGGTGATCTTAAAGAAACTAACCCAAATTTTCTTTAATTTTTAGCTAGTCGTCAGGACTTAAAAGAACTCAAGATGGGGTAAGAACAACCTGTCTTTCACATCTGTTTCCTCAGACTTCCTTTTGAAAAGCTGTGAGCTGTGCAAAAGCTACTTTATTTAATTGTTTTTTTTCTGTATTTCTTTAGGTACAATATTGATGTCCATGATTATTCTGTGCGCCTTAGAGCTGCACAGAAGTTCATAAAAGATGGTGACAAGGTTACATCGCTTTCCTCCTATGGACTTACCATGTAGGCTCTTTCATTCAGCTTTGTGTAATTGTCACTCACTATATTGAGCATGTTGATTGGTTCTTGTTTACAGGTGAAAGTTATGGTAACTATGAAAGGACGTGAAAAAGCCTTTCTAGACAACGCAATTCAGCTCATCAGAAAGTTCCAAACCGAGCTTGGCGAGGTAATCACTCTAATCCACGCCAACTGGATGATGTGACACTTAGGGGTGTTCATAAATACCCGACCCGCTGACCCGACACAAAAATACCGGGTATTAAATTGTTTTTCAAAACATTTAGCGGGCTGGGTACCCGGCCCGACTTAATTACCGATTTGCGGGTCGGGTCATGGGCCGGTGAATGGTGTAACTGGGTACCTGCAGACCCGTTTGTTAGTTTTTTTCCTTGAAAAAGTTCCGAATTGGTTTGTCATAGATCCGTGTCAAATGAATGAAATAGGGTTTTTACTCCCACTAACCTGTTTTCCTCCCAACACTCCCAGAGAGCCACTTTCCTCTCTCATTTTTTATTTTCTCAAACTCACTCTCTACATCTGATCTATTTGCACGGGCGTTCAGGCACAAGGGTGTGATCTGAATCTCCACTTACCCCTATAGTTTATACTTCGTACATATCACATCAATGAGTACAACGCTTGATGATGGTGGAAAGGGCTTGTTGCATACATCCAAAATATATATTTTTGATCTGTACTTTCTACCTTCCCTCTTATCTTCTCCTTTGCAGAGAATTCTCAAGGATTTTGAGTTGCTGACAACTTGTATGATTGAGTTTGTTCTTATTTCAACTTTTTTTTTTGTCAAATTAGAAGTTGAATTAGACTATTTGTATTTCCGGTTTGTTATTATTAAAACAAGATTACTACTAGCCAGTACTTTGAAATTGCCTTTGATTTTATCAATTCGGATAGAAACATAAAATGCAGTTAAAAAAAATAAAAATTCCAGGTACCTGTGACCTGACCCGTGTTAATCGGGTACCCGCTAACCAGGTACCCGTTTTTTACGGGTCGGGTTATGGGCCAACTTTTTGACTACGCGGAAAAGTGGGTATCCGCCTCTTCGGATACCCGATAAGCCGGGTACTCGGTAATGGACACTACACATGAGCTCATAGTTTTAGGCTTCATTCTTTTCACTTCAAAATTTCTTATCTGAACTTATTGAAGCTTATCAAGCCTTACTTCAGTTGTGAATTAAGCTTGAGTAAGCCTTGTTGGAATTTATTTGAACTTTTTTTATTTTCTTAAAATTTTCGATCCTAATTCTCTTTGTTGTTTTTCATGTGCTTTGAATCCATTGAGCTTCCCTATATTGATTGATATGATTTGCAGGTTGCAACTGAGGAGCACAACAATTTTTCGCGCAGGAAGAAAGAAGACATCACAGAGAGATTTATATATGTGATTCTCGTACCAAATAAAGTAGTTGTTCAGAAGGCCCAAGAGGCGCCAAAGAAGAAGCGTGATTTAGCTCCTAATGAAGTATCGGCTCCTAATGAAGTCCCGACTCCTAATGAAGTCCCGGCTCCTATTGAAGTCTCAGCTCGGCCAGTGTTTAATTCTACAAAATCGGTTTTGTGAGTTTTAGGTGAGGGATTTGTGGCTGGTAATCGTCATTATGTCCGAGTTTTATAGCAATTACAGCTTCTGTATAGGATTAATGAAAATAGAGTTTGTACGAGTACAACTCACATGCGTTGCTCAAGGTTGTAGAAATAACTTTCGAGTATCCCTAGAATCTGTATAATATTGTCCTTTGAAGTTACATGTAAAACCATTTTTGGAAGGTGAAAATACAAAGAAAGTCTGTTAATGACATCAATTTCTACTTAGAGCGTGATGAAAACTTTGATGAAAAATCTACCTCAACTATACTACTAAACTAAGGTTATGTTTGGCAAAACTAGCGGTAAAAGATAGCTTTTAGCGGTTGAGCAACGAGTAGCGATCCGAATAGCGGATAGCCTCCAACAAGTAGC

mRNA sequence

TAGAAGAGTATTTCAATTCCGTAATGCAAGGACAAAGCGGAGGAGAGACGAAGAAGAGACTGTGTGTGTGGATAAGGCCATTTCTGAAGAGAAAGAAAAAGCGCCACACCCAAAAAAAACCGGCGCCTACAAAACGCCTACAATGGCCGCTACTCTAGCTGCTACTGCTGGTGGCAACATCCTAACTCCGCCATTGTTATCCCGTCTCAAGCTCAAACCTCCGCCTACCTCGCTCCTATCTCTCTCCCCTTTCCAGTCAAATCTCTTTTGCCTTCGCCTTTGCATTTCTACTTCCAATTTTCAATCTTTTCCACTTTCTCACTCCTCCTCCTCTCACCTCGTTTCCGCCTCCGGACGATATTCCGGGAAGAGCTCTGATGATGATCAACCTCTCGATATATCTTCCGTTAGGTCAGATAAAGTTAGGCTAATTGATGAAAAGCAAAATATGATTGGAATTGTATCAAGAAATGAAGCAATTCGAAGAGCTGAGGATTTAGAGCTTGATCTGGTGGTGGTCTCACCCGAGGCAGATCCTCCTGTTGTCAGAATAATGAACTATGATAAATTTAGATACGAACAGCAGAAGAAGAAAAGGGAACAACAGAAGAAAAGTGCTGCTAGTCGTCAGGACTTAAAAGAACTCAAGATGGGGTACAATATTGATGTCCATGATTATTCTGTGCGCCTTAGAGCTGCACAGAAGTTCATAAAAGATGGTGACAAGGTGAAAGTTATGGTAACTATGAAAGGACGTGAAAAAGCCTTTCTAGACAACGCAATTCAGCTCATCAGAAAGTTCCAAACCGAGCTTGGCGAGGTTGCAACTGAGGAGCACAACAATTTTTCGCGCAGGAAGAAAGAAGACATCACAGAGAGATTTATATATGTGATTCTCGTACCAAATAAAGTAGTTGTTCAGAAGGCCCAAGAGGCGCCAAAGAAGAAGCGTGATTTAGCTCCTAATGAAGTATCGGCTCCTAATGAAGTCCCGACTCCTAATGAAGTCCCGGCTCCTATTGAAGTCTCAGCTCGGCCAGTGTTTAATTCTACAAAATCGGTTTTGTGAGTTTTAGGTGAGGGATTTGTGGCTGGTAATCGTCATTATGTCCGAGTTTTATAGCAATTACAGCTTCTGTATAGGATTAATGAAAATAGAGTTTGTACGAGTACAACTCACATGCGTTGCTCAAGGTTGTAGAAATAACTTTCGAGTATCCCTAGAATCTGTATAATATTGTCCTTTGAAGTTACATGTAAAACCATTTTTGGAAGGTGAAAATACAAAGAAAGTCTGTTAATGACATCAATTTCTACTTAGAGCGTGATGAAAACTTTGATGAAAAATCTACCTCAACTATACTACTAAACTAAGGTTATGTTTGGCAAAACTAGCGGTAAAAGATAGCTTTTAGCGGTTGAGCAACGAGTAGCGATCCGAATAGCGGATAGCCTCCAACAAGTAGC

Coding sequence (CDS)

ATGGCCGCTACTCTAGCTGCTACTGCTGGTGGCAACATCCTAACTCCGCCATTGTTATCCCGTCTCAAGCTCAAACCTCCGCCTACCTCGCTCCTATCTCTCTCCCCTTTCCAGTCAAATCTCTTTTGCCTTCGCCTTTGCATTTCTACTTCCAATTTTCAATCTTTTCCACTTTCTCACTCCTCCTCCTCTCACCTCGTTTCCGCCTCCGGACGATATTCCGGGAAGAGCTCTGATGATGATCAACCTCTCGATATATCTTCCGTTAGGTCAGATAAAGTTAGGCTAATTGATGAAAAGCAAAATATGATTGGAATTGTATCAAGAAATGAAGCAATTCGAAGAGCTGAGGATTTAGAGCTTGATCTGGTGGTGGTCTCACCCGAGGCAGATCCTCCTGTTGTCAGAATAATGAACTATGATAAATTTAGATACGAACAGCAGAAGAAGAAAAGGGAACAACAGAAGAAAAGTGCTGCTAGTCGTCAGGACTTAAAAGAACTCAAGATGGGGTACAATATTGATGTCCATGATTATTCTGTGCGCCTTAGAGCTGCACAGAAGTTCATAAAAGATGGTGACAAGGTGAAAGTTATGGTAACTATGAAAGGACGTGAAAAAGCCTTTCTAGACAACGCAATTCAGCTCATCAGAAAGTTCCAAACCGAGCTTGGCGAGGTTGCAACTGAGGAGCACAACAATTTTTCGCGCAGGAAGAAAGAAGACATCACAGAGAGATTTATATATGTGATTCTCGTACCAAATAAAGTAGTTGTTCAGAAGGCCCAAGAGGCGCCAAAGAAGAAGCGTGATTTAGCTCCTAATGAAGTATCGGCTCCTAATGAAGTCCCGACTCCTAATGAAGTCCCGGCTCCTATTGAAGTCTCAGCTCGGCCAGTGTTTAATTCTACAAAATCGGTTTTGTGA

Protein sequence

MAATLAATAGGNILTPPLLSRLKLKPPPTSLLSLSPFQSNLFCLRLCISTSNFQSFPLSHSSSSHLVSASGRYSGKSSDDDQPLDISSVRSDKVRLIDEKQNMIGIVSRNEAIRRAEDLELDLVVVSPEADPPVVRIMNYDKFRYEQQKKKREQQKKSAASRQDLKELKMGYNIDVHDYSVRLRAAQKFIKDGDKVKVMVTMKGREKAFLDNAIQLIRKFQTELGEVATEEHNNFSRRKKEDITERFIYVILVPNKVVVQKAQEAPKKKRDLAPNEVSAPNEVPTPNEVPAPIEVSARPVFNSTKSVL

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo04653	Spo04653	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo04653.1	Spo04653.1-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo04653.1.utr5p.1	Spo04653.1.utr5p.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo04653.1.CDS.9	Spo04653.1.CDS.9	CDS
Spo04653.1.CDS.8	Spo04653.1.CDS.8	CDS
Spo04653.1.CDS.7	Spo04653.1.CDS.7	CDS
Spo04653.1.CDS.6	Spo04653.1.CDS.6	CDS
Spo04653.1.CDS.5	Spo04653.1.CDS.5	CDS
Spo04653.1.CDS.4	Spo04653.1.CDS.4	CDS
Spo04653.1.CDS.3	Spo04653.1.CDS.3	CDS
Spo04653.1.CDS.2	Spo04653.1.CDS.2	CDS
Spo04653.1.CDS.1	Spo04653.1.CDS.1	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo04653.1.utr3p.1	Spo04653.1.utr3p.1	three_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo04653.1.exon.9	Spo04653.1.exon.9	exon
Spo04653.1.exon.8	Spo04653.1.exon.8	exon
Spo04653.1.exon.7	Spo04653.1.exon.7	exon
Spo04653.1.exon.6	Spo04653.1.exon.6	exon
Spo04653.1.exon.5	Spo04653.1.exon.5	exon
Spo04653.1.exon.4	Spo04653.1.exon.4	exon
Spo04653.1.exon.3	Spo04653.1.exon.3	exon
Spo04653.1.exon.2	Spo04653.1.exon.2	exon
Spo04653.1.exon.1	Spo04653.1.exon.1	exon

Homology

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BLAST of Spo04653.1 vs. NCBI nr
Match: gi|902183362|gb|KNA10103.1| (hypothetical protein SOVF_147540, partial [Spinacia oleracea])

HSP 1 Score: 573.9 bits (1478), Expect = 1.600e-160
Identity = 308/308 (100.00%), Postives = 308/308 (100.00%), Query Frame = 1


		  
Query: 1   MAATLAATAGGNILTPPLLSRLKLKPPPTSLLSLSPFQSNLFCLRLCISTSNFQSFPLSH 60
           MAATLAATAGGNILTPPLLSRLKLKPPPTSLLSLSPFQSNLFCLRLCISTSNFQSFPLSH
Sbjct: 38  MAATLAATAGGNILTPPLLSRLKLKPPPTSLLSLSPFQSNLFCLRLCISTSNFQSFPLSH 97

Query: 61  SSSSHLVSASGRYSGKSSDDDQPLDISSVRSDKVRLIDEKQNMIGIVSRNEAIRRAEDLE 120
           SSSSHLVSASGRYSGKSSDDDQPLDISSVRSDKVRLIDEKQNMIGIVSRNEAIRRAEDLE
Sbjct: 98  SSSSHLVSASGRYSGKSSDDDQPLDISSVRSDKVRLIDEKQNMIGIVSRNEAIRRAEDLE 157

Query: 121 LDLVVVSPEADPPVVRIMNYDKFRYEQQKKKREQQKKSAASRQDLKELKMGYNIDVHDYS 180
           LDLVVVSPEADPPVVRIMNYDKFRYEQQKKKREQQKKSAASRQDLKELKMGYNIDVHDYS
Sbjct: 158 LDLVVVSPEADPPVVRIMNYDKFRYEQQKKKREQQKKSAASRQDLKELKMGYNIDVHDYS 217

Query: 181 VRLRAAQKFIKDGDKVKVMVTMKGREKAFLDNAIQLIRKFQTELGEVATEEHNNFSRRKK 240
           VRLRAAQKFIKDGDKVKVMVTMKGREKAFLDNAIQLIRKFQTELGEVATEEHNNFSRRKK
Sbjct: 218 VRLRAAQKFIKDGDKVKVMVTMKGREKAFLDNAIQLIRKFQTELGEVATEEHNNFSRRKK 277

Query: 241 EDITERFIYVILVPNKVVVQKAQEAPKKKRDLAPNEVSAPNEVPTPNEVPAPIEVSARPV 300
           EDITERFIYVILVPNKVVVQKAQEAPKKKRDLAPNEVSAPNEVPTPNEVPAPIEVSARPV
Sbjct: 278 EDITERFIYVILVPNKVVVQKAQEAPKKKRDLAPNEVSAPNEVPTPNEVPAPIEVSARPV 337

Query: 301 FNSTKSVL 309
           FNSTKSVL
Sbjct: 338 FNSTKSVL 345

[Close]

BLAST of Spo04653.1 vs. NCBI nr
Match: gi|731352590|ref|XP_010687623.1| (PREDICTED: translation initiation factor IF-3, chloroplastic-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 394.4 bits (1012), Expect = 1.800e-106
Identity = 219/298 (73.49%), Postives = 246/298 (82.55%), Query Frame = 1


		  
Query: 7   ATAGGNILTPPLLSRLKLKPPPTSLLSLSPFQSNLFCLRLCISTSNFQSFPLSHSSSSHL 66
           AT  GNI TPPLLSRLKLKPP T LLSLS FQSNLF LRLCI++  F SFPLS  SSSH 
Sbjct: 5   ATVAGNIFTPPLLSRLKLKPPNTPLLSLSSFQSNLFGLRLCITSFKFHSFPLS-LSSSHR 64

Query: 67  VSASGRYSGKSSDDDQPLDISSVRSDKVRLIDEKQNMIGIVSRNEAIRRAEDLELDLVVV 126
           +S S R++  +SDDD  L +SSVRSDKVRLIDE+QNM+G++S++EAIRRAEDLELDLVVV
Sbjct: 65  LSVSARFTPNNSDDDTILGLSSVRSDKVRLIDEQQNMVGVLSKSEAIRRAEDLELDLVVV 124

Query: 127 SPEADPPVVRIMNYDKFRYEQQKKKREQQKKSAASRQDLKELKMGYNIDVHDYSVRLRAA 186
           SP+ADPPVVRIMNYDK+RYEQQKKKREQQKKSAASR DLKELKMGYNIDVHDYSVRLRAA
Sbjct: 125 SPDADPPVVRIMNYDKYRYEQQKKKREQQKKSAASRMDLKELKMGYNIDVHDYSVRLRAA 184

Query: 187 QKFIKDGDKVKVMVTMKGREKAFLDNAIQLIRKFQTELGEVATEEHNNFSRRKKEDITER 246
           QKF+KDGDKVKV+V +KGR  AFL+ A+QLIRKFQTELGE+ATEEHNNF+RRK+EDITER
Sbjct: 185 QKFLKDGDKVKVIVNLKGRGNAFLEKAVQLIRKFQTELGELATEEHNNFNRRKREDITER 244

Query: 247 FIYVILVPNKVVVQKAQEAPKKKRDLAPNEVSAPNEVPTPNEVPAPIEVSARPVFNST 305
           FIY+ILVPNK VVQK  EAPK        E    N   TP EV A    S + +FN +
Sbjct: 245 FIYLILVPNKNVVQKTPEAPK-------TEAPKKNPTSTPEEVSAGAFSSLKSMFNES 294

[Close]

BLAST of Spo04653.1 vs. NCBI nr
Match: gi|1009109779|ref|XP_015892083.1| (PREDICTED: translation initiation factor IF-3-like [Ziziphus jujuba])

HSP 1 Score: 269.2 bits (687), Expect = 8.700e-69
Identity = 159/265 (60.00%), Postives = 196/265 (73.96%), Query Frame = 1


		  
Query: 28  PTSLLSLSPFQSNLFCLRLCISTSNFQSFPLSHSSSSHLVSASGRYSGKS---------- 87
           P+ L   S F S LF LRL  ++S  +S  L ++SSS   + + RY G S          
Sbjct: 33  PSLLPISSSFDSKLFGLRLQ-NSSLAKSSSLVYASSSFSAAITSRYGGGSRYSGPDKRSR 92

Query: 88  ---SDDDQPLDISSVRSDKVRLIDEKQNMIGIVSRNEAIRRAEDLELDLVVVSPEADPPV 147
              SDDDQ LDIS++RSD VRLIDE QNM+GIVS++EA+R AED ELDLV++SP+ADPPV
Sbjct: 93  QSYSDDDQALDISTIRSDSVRLIDENQNMVGIVSKSEAVRIAEDAELDLVILSPDADPPV 152

Query: 148 VRIMNYDKFRYEQQKKKREQQKKSAASRQDLKELKMGYNIDVHDYSVRLRAAQKFIKDGD 207
           V+IM+Y+K+RYEQQKKKR+QQKKSAASR  LKELKMGYNID HDYSVRL+AA+KF+KDGD
Sbjct: 153 VKIMDYNKYRYEQQKKKRDQQKKSAASRMALKELKMGYNIDQHDYSVRLKAARKFLKDGD 212

Query: 208 KVKVMVTMKGREKAFLDNAIQLIRKFQTELGEVATEEHNNFSRRKKEDITERFIYVILVP 267
           KVKV+V +KGRE  F + AI+LIR+FQ E+GE+ATEE  NF         +R I++ILVP
Sbjct: 213 KVKVIVNLKGRENEFRNIAIELIRRFQNEVGELATEEAKNFR--------DRNIFIILVP 272

Query: 268 NKVVVQKAQEAPKKKRDLAPNEVSA 280
           N+ V+QK QE P KK   A NEVSA
Sbjct: 273 NRTVLQKGQEPPAKKDKSAVNEVSA 288

[Close]

BLAST of Spo04653.1 vs. NCBI nr
Match: gi|747065489|ref|XP_011079383.1| (PREDICTED: translation initiation factor IF-3, chloroplastic [Sesamum indicum])

HSP 1 Score: 265.0 bits (676), Expect = 1.600e-67
Identity = 151/257 (58.75%), Postives = 184/257 (71.60%), Query Frame = 1


		  
Query: 34  LSPFQSNLFCLRLCISTSNFQSFPLSHSSSSHLVSASGRYSG-----------KSSDDDQ 93
           L PF  NL      I        P   S S+   + S RY G               DD+
Sbjct: 20  LKPFAFNLHSFSFRIHRPTTTRCP---SISTTFTTISARYGGGGGGGGGGFRKSQPSDDE 79

Query: 94  PLDISSVRSDKVRLIDEKQNMIGIVSRNEAIRRAEDLELDLVVVSPEADPPVVRIMNYDK 153
            LDISS+RSD VRLIDE+Q M+GIVS+ +A + AED ELDLV++SP+ADPPVVRIM+Y+K
Sbjct: 80  ALDISSIRSDTVRLIDEQQKMVGIVSKAQAFKMAEDAELDLVILSPDADPPVVRIMDYNK 139

Query: 154 FRYEQQKKKREQQKKSAASRQDLKELKMGYNIDVHDYSVRLRAAQKFIKDGDKVKVMVTM 213
           +RYEQQKKKR+QQKKSAASR DLKELKMGYNIDVHDYSVRL+AAQKF+KDGDKVKV+V +
Sbjct: 140 YRYEQQKKKRDQQKKSAASRMDLKELKMGYNIDVHDYSVRLKAAQKFLKDGDKVKVIVNL 199

Query: 214 KGREKAFLDNAIQLIRKFQTELGEVATEEHNNFSRRKKEDITERFIYVILVPNKVVVQKA 273
           KGRE  F +NAI+LIR+FQ ++GE+ATEE+ NF         +R I+++LVPNK V QK+
Sbjct: 200 KGRENEFRNNAIELIRRFQNDIGELATEENKNF--------RDRNIFIVLVPNKAVAQKS 259

Query: 274 QEAPKKKRDLAPNEVSA 280
           QE PKKK +   NEVSA
Sbjct: 260 QEPPKKKDNSVENEVSA 265

[Close]

BLAST of Spo04653.1 vs. NCBI nr
Match: gi|720030467|ref|XP_010265524.1| (PREDICTED: translation initiation factor IF-3, chloroplastic-like [Nelumbo nucifera])

HSP 1 Score: 263.1 bits (671), Expect = 6.200e-67
Identity = 156/268 (58.21%), Postives = 192/268 (71.64%), Query Frame = 1


		  
Query: 28  PTSLLSLSPFQSNLFCLRLCISTSNFQSFPLSHSSSSHLVSASGRYSG---------KSS 87
           P S L LSP +S L  +RLC   S       S S +   VS + R+ G         +S 
Sbjct: 19  PPSTLCLSPLESKLLGIRLCNPNSARIDCSASLSFAPQ-VSITARFGGYRPSPGNIRRSR 78

Query: 88  DD-------DQPLDISSVRSDKVRLIDEKQNMIGIVSRNEAIRRAEDLELDLVVVSPEAD 147
           D        D  LD+SS+RSD VRLIDE+QNM+G+VS++EAI+ AED ELDLV++SP+AD
Sbjct: 79  DTRKAEFEADSALDMSSIRSDSVRLIDEQQNMVGVVSKSEAIQMAEDAELDLVILSPDAD 138

Query: 148 PPVVRIMNYDKFRYEQQKKKREQQKKSAASRQDLKELKMGYNIDVHDYSVRLRAAQKFIK 207
           PPVVRIM+Y+K+RYEQQKKKR QQKKSAA+R DLKELKMGYNID HDYSVRL++AQKF+K
Sbjct: 139 PPVVRIMDYNKYRYEQQKKKRGQQKKSAANRMDLKELKMGYNIDSHDYSVRLKSAQKFLK 198

Query: 208 DGDKVKVMVTMKGREKAFLDNAIQLIRKFQTELGEVATEEHNNFSRRKKEDITERFIYVI 267
           DGDKVKV+V +KGRE  F + AI+LIR+FQ ++GE+ATEE  NFS        ER I+++
Sbjct: 199 DGDKVKVIVNLKGRENEFRNIAIKLIRRFQNDIGELATEESKNFS--------ERNIFIV 258

Query: 268 LVPNKVVVQKAQEAPKKKRDLAPNEVSA 280
           LVPNK V+QK QE PKKK   A  EVSA
Sbjct: 259 LVPNKAVMQKIQEQPKKKEKSAATEVSA 277

[Close]

BLAST of Spo04653.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QTU5_SPIOL (Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_147540 PE=4 SV=1)

HSP 1 Score: 573.9 bits (1478), Expect = 1.100e-160
Identity = 308/308 (100.00%), Postives = 308/308 (100.00%), Query Frame = 1


		  
Query: 1   MAATLAATAGGNILTPPLLSRLKLKPPPTSLLSLSPFQSNLFCLRLCISTSNFQSFPLSH 60
           MAATLAATAGGNILTPPLLSRLKLKPPPTSLLSLSPFQSNLFCLRLCISTSNFQSFPLSH
Sbjct: 38  MAATLAATAGGNILTPPLLSRLKLKPPPTSLLSLSPFQSNLFCLRLCISTSNFQSFPLSH 97

Query: 61  SSSSHLVSASGRYSGKSSDDDQPLDISSVRSDKVRLIDEKQNMIGIVSRNEAIRRAEDLE 120
           SSSSHLVSASGRYSGKSSDDDQPLDISSVRSDKVRLIDEKQNMIGIVSRNEAIRRAEDLE
Sbjct: 98  SSSSHLVSASGRYSGKSSDDDQPLDISSVRSDKVRLIDEKQNMIGIVSRNEAIRRAEDLE 157

Query: 121 LDLVVVSPEADPPVVRIMNYDKFRYEQQKKKREQQKKSAASRQDLKELKMGYNIDVHDYS 180
           LDLVVVSPEADPPVVRIMNYDKFRYEQQKKKREQQKKSAASRQDLKELKMGYNIDVHDYS
Sbjct: 158 LDLVVVSPEADPPVVRIMNYDKFRYEQQKKKREQQKKSAASRQDLKELKMGYNIDVHDYS 217

Query: 181 VRLRAAQKFIKDGDKVKVMVTMKGREKAFLDNAIQLIRKFQTELGEVATEEHNNFSRRKK 240
           VRLRAAQKFIKDGDKVKVMVTMKGREKAFLDNAIQLIRKFQTELGEVATEEHNNFSRRKK
Sbjct: 218 VRLRAAQKFIKDGDKVKVMVTMKGREKAFLDNAIQLIRKFQTELGEVATEEHNNFSRRKK 277

Query: 241 EDITERFIYVILVPNKVVVQKAQEAPKKKRDLAPNEVSAPNEVPTPNEVPAPIEVSARPV 300
           EDITERFIYVILVPNKVVVQKAQEAPKKKRDLAPNEVSAPNEVPTPNEVPAPIEVSARPV
Sbjct: 278 EDITERFIYVILVPNKVVVQKAQEAPKKKRDLAPNEVSAPNEVPTPNEVPAPIEVSARPV 337

Query: 301 FNSTKSVL 309
           FNSTKSVL
Sbjct: 338 FNSTKSVL 345

[Close]

BLAST of Spo04653.1 vs. UniProtKB/TrEMBL
Match: A0A0J8EKF4_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_8g191450 PE=4 SV=1)

HSP 1 Score: 394.4 bits (1012), Expect = 1.200e-106
Identity = 219/298 (73.49%), Postives = 246/298 (82.55%), Query Frame = 1


		  
Query: 7   ATAGGNILTPPLLSRLKLKPPPTSLLSLSPFQSNLFCLRLCISTSNFQSFPLSHSSSSHL 66
           AT  GNI TPPLLSRLKLKPP T LLSLS FQSNLF LRLCI++  F SFPLS  SSSH 
Sbjct: 5   ATVAGNIFTPPLLSRLKLKPPNTPLLSLSSFQSNLFGLRLCITSFKFHSFPLS-LSSSHR 64

Query: 67  VSASGRYSGKSSDDDQPLDISSVRSDKVRLIDEKQNMIGIVSRNEAIRRAEDLELDLVVV 126
           +S S R++  +SDDD  L +SSVRSDKVRLIDE+QNM+G++S++EAIRRAEDLELDLVVV
Sbjct: 65  LSVSARFTPNNSDDDTILGLSSVRSDKVRLIDEQQNMVGVLSKSEAIRRAEDLELDLVVV 124

Query: 127 SPEADPPVVRIMNYDKFRYEQQKKKREQQKKSAASRQDLKELKMGYNIDVHDYSVRLRAA 186
           SP+ADPPVVRIMNYDK+RYEQQKKKREQQKKSAASR DLKELKMGYNIDVHDYSVRLRAA
Sbjct: 125 SPDADPPVVRIMNYDKYRYEQQKKKREQQKKSAASRMDLKELKMGYNIDVHDYSVRLRAA 184

Query: 187 QKFIKDGDKVKVMVTMKGREKAFLDNAIQLIRKFQTELGEVATEEHNNFSRRKKEDITER 246
           QKF+KDGDKVKV+V +KGR  AFL+ A+QLIRKFQTELGE+ATEEHNNF+RRK+EDITER
Sbjct: 185 QKFLKDGDKVKVIVNLKGRGNAFLEKAVQLIRKFQTELGELATEEHNNFNRRKREDITER 244

Query: 247 FIYVILVPNKVVVQKAQEAPKKKRDLAPNEVSAPNEVPTPNEVPAPIEVSARPVFNST 305
           FIY+ILVPNK VVQK  EAPK        E    N   TP EV A    S + +FN +
Sbjct: 245 FIYLILVPNKNVVQKTPEAPK-------TEAPKKNPTSTPEEVSAGAFSSLKSMFNES 294

[Close]

BLAST of Spo04653.1 vs. UniProtKB/TrEMBL
Match: M5W2Z1_PRUPE (Translation initiation factor IF-3 OS=Prunus persica GN=PRUPE_ppa009761mg PE=3 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 8.200e-66
Identity = 162/276 (58.70%), Postives = 203/276 (73.55%), Query Frame = 1


		  
Query: 18  LLSRLKLKPPPTSLLSLSPFQSNLFCLRLCISTSNFQSFPLSHSSSSHLVSASG------ 77
           +L R   K  P S LSLS  +S LF LR   S+S F    LS + SS + +  G      
Sbjct: 13  MLYRTTYKTTP-SPLSLSSVESKLFGLRFNNSSSCFGC--LSSTVSSPITARFGGGPRFP 72

Query: 78  ----RYSGKS-SDDDQPLDISSVRSDKVRLIDEKQNMIGIVSRNEAIRRAEDLELDLVVV 137
               R S KS SD+D+ LD+SS+RSD VRLID KQNM+G+VS+ EAIR A+D +LDLV++
Sbjct: 73  GNDPRRSRKSDSDEDEALDVSSIRSDTVRLIDAKQNMVGVVSKREAIRLADDADLDLVIL 132

Query: 138 SPEADPPVVRIMNYDKFRYEQQKKKREQQKKSAASRQDLKELKMGYNIDVHDYSVRLRAA 197
           SPEADPPV+RIM+Y+K+RYEQQKKKR QQKKSAASR DLKELKMGYNID HDYSVRLRAA
Sbjct: 133 SPEADPPVLRIMDYNKYRYEQQKKKRGQQKKSAASRMDLKELKMGYNIDQHDYSVRLRAA 192

Query: 198 QKFIKDGDKVKVMVTMKGREKAFLDNAIQLIRKFQTELGEVATEEHNNFSRRKKEDITER 257
           QKF+KDGDKVKV+V +KGRE  F + AI LI++FQ ++GE+ATEE  +FS        ++
Sbjct: 193 QKFLKDGDKVKVIVHLKGRENDFRNIAIALIKRFQNDVGELATEEAKSFS--------DK 252

Query: 258 FIYVILVPNKVVVQKAQE-APKKKRDLAP--NEVSA 280
            ++++LVPNK ++QKAQE  PKKK + AP  NE+SA
Sbjct: 253 NMFIVLVPNKAILQKAQEPPPKKKENSAPAVNEISA 277

[Close]

BLAST of Spo04653.1 vs. UniProtKB/TrEMBL
Match: K4CB54_SOLLC (Translation initiation factor IF-3 OS=Solanum lycopersicum PE=3 SV=1)

HSP 1 Score: 258.1 bits (658), Expect = 1.400e-65
Identity = 155/283 (54.77%), Postives = 198/283 (69.96%), Query Frame = 1


		  
Query: 9   AGGNILTPPLLSRLKLKPPPTSLLSLSPFQSNLFCLRLCISTSNFQSFPLSHSSSS--HL 68
           AG    T   L+ +  KP     L L    S++F LR       F +  L   SS   H 
Sbjct: 2   AGLTTSTSFTLTPISSKPITNKPLFLHYLNSSIFGLR-------FHNPQLRSCSSLIYHS 61

Query: 69  VSASGRYSGKS----------SDDDQPLDISSVRSDKVRLIDEKQNMIGIVSRNEAIRRA 128
            + S RY G            S++D+ LDISS+RSDKVRLID+KQNM+GIVS+ EA++RA
Sbjct: 62  ATISARYGGGGGRGGFRPPPRSEEDEALDISSIRSDKVRLIDDKQNMLGIVSKMEALQRA 121

Query: 129 EDLELDLVVVSPEADPPVVRIMNYDKFRYEQQKKKREQQKKSAASRQDLKELKMGYNIDV 188
           ED  LDLV++SPEADPPVV+IM+Y+K++YE QKKK+EQQKK+AASR DLKELKMGYNID 
Sbjct: 122 EDASLDLVILSPEADPPVVKIMDYNKYKYELQKKKKEQQKKNAASRMDLKELKMGYNIDS 181

Query: 189 HDYSVRLRAAQKFIKDGDKVKVMVTMKGREKAFLDNAIQLIRKFQTELGEVATEEHNNFS 248
           HDYSVRL+AAQKF+KDGDKVK++V +KGRE  F +NAI+L+R+FQ ++GE+ATEE+ NF 
Sbjct: 182 HDYSVRLKAAQKFLKDGDKVKIIVNLKGRENEFRNNAIELLRRFQNDVGELATEENKNF- 241

Query: 249 RRKKEDITERFIYVILVPNKVVVQKAQEAPKKKRDLAPNEVSA 280
                   +R ++++LVPNK +VQKA E PKKK   A  EVSA
Sbjct: 242 -------RDRNVFIVLVPNKAIVQKAPEQPKKKEKPA-TEVSA 268

[Close]

BLAST of Spo04653.1 vs. UniProtKB/TrEMBL
Match: A0A0A0LH34_CUCSA (Translation initiation factor IF-3 OS=Cucumis sativus GN=Csa_2G036070 PE=3 SV=1)

HSP 1 Score: 258.1 bits (658), Expect = 1.400e-65
Identity = 154/275 (56.00%), Postives = 193/275 (70.18%), Query Frame = 1


		  
Query: 26  PPPTSLLSLSPFQSNLFCLRLCISTSNFQSFPLSHSSSSHLV------------------ 85
           PPPTS  S +PF+++   L +  S SN   F L  S+S  L+                  
Sbjct: 31  PPPTSSSSTTPFRTSFPSLPISSSNSNAFKFRLHKSNSLRLLFSSPVSSPIRTSVFARLG 90

Query: 86  ---SASGRYSGKSSDDDQPLDISSVRSDKVRLIDEKQNMIGIVSRNEAIRRAEDLELDLV 145
               +SG    K S+D+  LDIS+++S  VRLID +QNM+G+VS+ +AI+ AED ELDLV
Sbjct: 91  GAPRSSGPPDSKRSNDEIGLDISAIKSINVRLIDAEQNMVGVVSKAQAIQMAEDAELDLV 150

Query: 146 VVSPEADPPVVRIMNYDKFRYEQQKKKREQQKKSAASRQDLKELKMGYNIDVHDYSVRLR 205
           VVSP+ADPPVVRIM+Y+K+RYE QKKKR QQKKSAA+R DLKELKMGYNID HDYSVRL+
Sbjct: 151 VVSPDADPPVVRIMDYNKYRYELQKKKRGQQKKSAATRMDLKELKMGYNIDQHDYSVRLK 210

Query: 206 AAQKFIKDGDKVKVMVTMKGREKAFLDNAIQLIRKFQTELGEVATEEHNNFSRRKKEDIT 265
           AA+KF+KDGDKVKV+V +KGRE  F + AI+LIR+FQ E+GE+ATEE  NF         
Sbjct: 211 AAKKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQEEVGELATEEAKNFR-------- 270

Query: 266 ERFIYVILVPNKVVVQKAQEAPKKKRDLAPNEVSA 280
           +R I+++LVPNK V+QKAQE PKKK   A N VSA
Sbjct: 271 DRNIFIVLVPNKAVLQKAQEPPKKKDKPAVNGVSA 297

[Close]

BLAST of Spo04653.1 vs. ExPASy Swiss-Prot
Match: IF3_NOSS1 (Translation initiation factor IF-3 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=infC PE=3 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 1.300e-27
Identity = 71/155 (45.81%), Postives = 105/155 (67.74%), Query Frame = 1


		  
Query: 76  KSSDDDQPLDISSVRSDKVRLIDEKQNMIGIVSRNEAIRRAEDLELDLVVVSPEADPPVV 135
           K    D P     +R  K+R+ID   + +GI++  EA++ AE+ ELDLV++S +ADPPV 
Sbjct: 6   KKRTRDLPQINERIRFPKIRVIDTDGSQLGILTPQEALQLAEEKELDLVLLSDKADPPVC 65

Query: 136 RIMNYDKFRYEQQKKKREQQKKSAASRQDLKELKMGYNIDVHDYSVRLRAAQKFIKDGDK 195
           RIM+Y K+++EQ+KK RE +KK   +  D+KE+KM Y I+ HDY+VR++ A++F+KDGDK
Sbjct: 66  RIMDYGKYKFEQEKKAREARKKQHTA--DVKEVKMRYKIEEHDYNVRVKQAERFLKDGDK 125

Query: 196 VKVMVTMKGREKAFLDNAIQLIRKFQTEL---GEV 228
           VK  V  +GRE    D A  L+++  T+L   GEV
Sbjct: 126 VKATVMFRGREIQHSDLAEDLLKRMATDLEPFGEV 158

[Close]

BLAST of Spo04653.1 vs. ExPASy Swiss-Prot
Match: IF3_ANAVT (Translation initiation factor IF-3 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=infC PE=3 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 1.300e-27
Identity = 71/155 (45.81%), Postives = 105/155 (67.74%), Query Frame = 1


		  
Query: 76  KSSDDDQPLDISSVRSDKVRLIDEKQNMIGIVSRNEAIRRAEDLELDLVVVSPEADPPVV 135
           K    D P     +R  K+R+ID   + +GI++  EA++ AE+ ELDLV++S +ADPPV 
Sbjct: 6   KKRTRDLPQINERIRFPKIRVIDTDGSQLGILTPQEALQLAEEKELDLVLLSDKADPPVC 65

Query: 136 RIMNYDKFRYEQQKKKREQQKKSAASRQDLKELKMGYNIDVHDYSVRLRAAQKFIKDGDK 195
           RIM+Y K+++EQ+KK RE +KK   +  D+KE+KM Y I+ HDY+VR++ A++F+KDGDK
Sbjct: 66  RIMDYGKYKFEQEKKAREARKKQHTA--DVKEVKMRYKIEEHDYNVRVKQAERFLKDGDK 125

Query: 196 VKVMVTMKGREKAFLDNAIQLIRKFQTEL---GEV 228
           VK  V  +GRE    D A  L+++  T+L   GEV
Sbjct: 126 VKATVMFRGREIQHSDLAEDLLKRMATDLEPFGEV 158

[Close]

BLAST of Spo04653.1 vs. ExPASy Swiss-Prot
Match: IF3_MICAN (Translation initiation factor IF-3 OS=Microcystis aeruginosa (strain NIES-843) GN=infC PE=3 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 3.700e-27
Identity = 68/148 (45.95%), Postives = 100/148 (67.57%), Query Frame = 1


		  
Query: 81  DQPLDISSVRSDKVRLIDEKQNMIGIVSRNEAIRRAEDLELDLVVVSPEADPPVVRIMNY 140
           D P     +R  ++R+ID   + +GI++  EA+R AE+ ELDLV+VS  A PPV RIM+Y
Sbjct: 10  DLPQINERIRFPEIRVIDSDGSQLGIITPAEALRVAEEKELDLVLVSETASPPVCRIMDY 69

Query: 141 DKFRYEQQKKKREQQKKSAASRQDLKELKMGYNIDVHDYSVRLRAAQKFIKDGDKVKVMV 200
            K+++EQ+KK RE +KK   +  D+KE+KM Y ID HDY+VR+  AQ+F+K GDKVK  +
Sbjct: 70  GKYKFEQEKKAREAKKKQHTA--DIKEVKMRYKIDEHDYNVRVNQAQRFLKAGDKVKATI 129

Query: 201 TMKGREKAFLDNAIQLIRKFQTELGEVA 229
           T +GRE    + A +L+ +   +L +VA
Sbjct: 130 TFRGREIQHSNLAEELLARMAKDLQDVA 155

[Close]

BLAST of Spo04653.1 vs. ExPASy Swiss-Prot
Match: IF3_NOSP7 (Translation initiation factor IF-3 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=infC PE=3 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 3.700e-27
Identity = 68/149 (45.64%), Postives = 100/149 (67.11%), Query Frame = 1


		  
Query: 76  KSSDDDQPLDISSVRSDKVRLIDEKQNMIGIVSRNEAIRRAEDLELDLVVVSPEADPPVV 135
           K    D P     +R  K+R+ID     +GI+   EA++ AE+ ELDLV++S +ADPPV 
Sbjct: 6   KKRTRDLPQINERIRFPKIRVIDTDGAQLGIMPPQEALQLAEEKELDLVLISDKADPPVC 65

Query: 136 RIMNYDKFRYEQQKKKREQQKKSAASRQDLKELKMGYNIDVHDYSVRLRAAQKFIKDGDK 195
           RIM+Y K+++EQ+KK RE +KK   +  D+KE+KM Y I+ HDY+VR++ A++F+KDGDK
Sbjct: 66  RIMDYGKYKFEQEKKAREARKKQHTA--DVKEVKMRYKIEEHDYNVRVKQAERFLKDGDK 125

Query: 196 VKVMVTMKGREKAFLDNAIQLIRKFQTEL 225
           VK  V  +GRE    D A  L+++  T+L
Sbjct: 126 VKATVMFRGREIQHSDLAEDLLKRMATDL 152

[Close]

BLAST of Spo04653.1 vs. ExPASy Swiss-Prot
Match: IF3_PROMA (Translation initiation factor IF-3 OS=Prochlorococcus marinus (strain SARG / CCMP1375 / SS120) GN=infC PE=3 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 4.800e-27
Identity = 79/188 (42.02%), Postives = 115/188 (61.17%), Query Frame = 1


		  
Query: 89  VRSDKVRLIDEKQNMIGIVSRNEAIRRAEDLELDLVVVSPEADPPVVRIMNYDKFRYEQQ 148
           ++  K+R++D     +GI+SR EA+  A+D ELDLV+VS +ADPPV RIMNY KF++EQ+
Sbjct: 23  IKYPKLRVVDADGTQLGIISREEALDVAQDRELDLVLVSEKADPPVCRIMNYGKFKFEQE 82

Query: 149 KKKREQQKKSAASRQDLKELKMGYNIDVHDYSVRLRAAQKFIKDGDKVKVMVTMKGREKA 208
           KK +E +KKS   + ++KE+KM Y ID HDY VR+  A +F+K GDKVK  V  +GRE  
Sbjct: 83  KKAKEAKKKS--HQTEVKEVKMRYKIDEHDYQVRIGQATRFLKAGDKVKCTVIFRGREIQ 142

Query: 209 FLDNAIQLIRKFQTELGEVATEEHNNFSRRKKEDITERFIYVILVPNKVVV----QKAQE 268
             + A  L+ +   +L E A  +       K+E    R + + L P K  +    Q+ +E
Sbjct: 143 HTNLAESLLARMAKDLEEPAEVQ----QAPKREG---RNMIMFLTPRKTPLIKKEQELEE 201

Query: 269 APKKKRDL 273
           A K KR +
Sbjct: 203 ASKAKRTI 201

[Close]

BLAST of Spo04653.1 vs. TAIR (Arabidopsis)
Match: AT4G30690.1 (Translation initiation factor 3 protein)

HSP 1 Score: 247.3 bits (630), Expect = 1.200e-65
Identity = 144/267 (53.93%), Postives = 188/267 (70.41%), Query Frame = 1


		  
Query: 36  PFQSNLFCLRLCISTSNFQSFPLSHSSSSHLVSASGRYSG----------------KSSD 95
           P +S LF LRLC+   +  S    H      ++   RY G                K S+
Sbjct: 24  PVKSKLFGLRLCVPEFSIVSLSPYHHRRCPAITC--RYGGGGGGGSRFPGDRRGRQKESE 83

Query: 96  DDQPLDISSVRSDKVRLIDEKQNMIGIVSRNEAIRRAEDLELDLVVVSPEADPPVVRIMN 155
           DD  LDIS++RS  VRLID++QNMIG+VS+ EA+RRAED ELDLV++SP+ADPPVVR+M+
Sbjct: 84  DDDSLDISAIRSATVRLIDDQQNMIGLVSKEEAVRRAEDAELDLVILSPDADPPVVRMMD 143

Query: 156 YDKFRYEQQKKKREQQKKSAASRQDLKELKMGYNIDVHDYSVRLRAAQKFIKDGDKVKVM 215
           Y K+RYEQQK+K+EQQKK+  +R DLKELKMGYNID HDYSVR+RAA+KF++DGDKVKV+
Sbjct: 144 YSKYRYEQQKRKKEQQKKT--TRMDLKELKMGYNIDQHDYSVRMRAARKFLQDGDKVKVI 203

Query: 216 VTMKGREKAFLDNAIQLIRKFQTELGEVATEEHNNFSRRKKEDITERFIYVILVPNKVVV 275
           V MKGRE  F + AI+L+R+FQTE+GE+ TEE  NF         +R ++++LVPNK V+
Sbjct: 204 VNMKGRENEFRNIAIELLRRFQTEIGELGTEESKNF--------RDRNLFIVLVPNKEVI 263

Query: 276 QKAQE-APKKKRDLAPNEVSAPNEVPT 286
           +K QE  PKKK+  A ++VSA N   T
Sbjct: 264 RKVQEPPPKKKKKPADDKVSAANITAT 278

[Close]

BLAST of Spo04653.1 vs. TAIR (Arabidopsis)
Match: AT2G24060.1 (Translation initiation factor 3 protein)

HSP 1 Score: 232.6 bits (592), Expect = 3.200e-61
Identity = 144/282 (51.06%), Postives = 192/282 (68.09%), Query Frame = 1


		  
Query: 33  SLSPFQSNLFCLRLCISTSNFQSFPLSHSSSSHLVSASG------RYSG-------KSSD 92
           SL    S L  LRL  +  +F +   S   +  +    G      R+SG       K ++
Sbjct: 26  SLFSVDSKLCSLRLSKTELSFTNLTPSPRRAFAVTCRFGGGGGGYRFSGDNRRGRPKEAE 85

Query: 93  DDQPLDISSVRSDKVRLIDEKQNMIGIVSRNEAIRRAEDLELDLVVVSPEADPPVVRIMN 152
            D+ LDISS+RS  VRLID +QNM+G+VS++EA+R A+D ELDLV++SP+ADPPVV++M+
Sbjct: 86  IDEALDISSIRSATVRLIDGQQNMLGLVSKDEAVRMADDAELDLVILSPDADPPVVKMMD 145

Query: 153 YDKFRYEQQKKKREQQKKSAASRQDLKELKMGYNIDVHDYSVRLRAAQKFIKDGDKVKVM 212
           Y K+RYEQQK+K++QQKK+  +R DLKELKMGYNID HDYSVRLRAAQKF++DGDKVKV+
Sbjct: 146 YSKYRYEQQKRKKDQQKKT--TRMDLKELKMGYNIDQHDYSVRLRAAQKFLQDGDKVKVI 205

Query: 213 VTMKGREKAFLDNAIQLIRKFQTELGEVATEEHNNFSRRKKEDITERFIYVILVPNKVVV 272
           V+MKGRE  F + AI+L+R+FQTE+GE+ATEE  NF         +R +++ILVPNK ++
Sbjct: 206 VSMKGRENEFRNIAIELLRRFQTEIGELATEESKNF--------RDRNMFIILVPNKEMI 265

Query: 273 QKAQEAP-KKKRDLAPNEVSA--------PNEVPTPNEVPAP 293
           +K QE P +KK+  A NE SA        P   P P   P P
Sbjct: 266 RKPQEPPTRKKKKTAENEASASAAEITAEPEPEPEPEPEPEP 297

[Close]

BLAST of Spo04653.1 vs. TAIR (Arabidopsis)
Match: AT1G34360.1 (translation initiation factor 3 (IF-3) family protein)

HSP 1 Score: 61.2 bits (147), Expect = 1.300e-9
Identity = 65/236 (27.54%), Postives = 108/236 (45.76%), Query Frame = 1


		  
Query: 68  SASGRYSGKSSDDDQPLDISSVRSDKVRLIDEKQNMIGIVSRNEAIRRAEDLELDLVVVS 127
           SA  R      D D P     +  D VRL+ E+ + +  VS  EA+RRA++L+ DLV V 
Sbjct: 69  SAQTRKKEAEVDSDGPRLNEKITGDYVRLVSEEGHCV--VSLREALRRAKELQCDLVEVQ 128

Query: 128 PEADPPVVRIMNYDKFRYEQQK--KKREQQKKSAASRQDLKELKMGYNIDVHDYSVRLRA 187
            +A PPV +I+ Y    Y++ K  K+R + K++ A R D+KE++    I+  D   +   
Sbjct: 129 RDAKPPVCKIVKYSLELYKKAKVGKERAKAKRAEAIRPDIKEIRFTPKIEAKDLKFKSDQ 188

Query: 188 AQKFIKDGDKVKVM-VTMKGREKAF-LDNAIQLIRKFQTELGEVATEEHNNFSRRKKEDI 247
           A K ++ G +VK + V  K + K    +  ++L+ +F   +G+   E      R+     
Sbjct: 189 ALKLMESGYRVKCLAVPDKDKHKELEPEKLLELLFRFTCFIGDALVESWPEADRKGA--- 248

Query: 248 TERFIYVILVPNKVVVQKAQEAPKKK------RDLAPNEVSAPNEVPTPNEVPAPI 294
                        V+V+ A+  P KK      +D+         E P P+   A +
Sbjct: 249 ------------VVIVRHAKFGPPKKGGVKLMKDIDIKSARVKEESPKPDSSKAGV 287

The following BLAST results are available for this feature:

BLAST of Spo04653.1 vs. NCBI nr
BLAST of Spo04653.1 vs. UniProtKB/TrEMBL
BLAST of Spo04653.1 vs. ExPASy Swiss-Prot
BLAST of Spo04653.1 vs. TAIR (Arabidopsis)

BLAST of Spo04653.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902183362\|gb\|KNA10103.1\|	1.6e-160	100.	hypothetical protein SOVF_1475...	[more]
gi\|731352590\|ref\|XP_010687623.1\|	1.8e-106	73.4	PREDICTED: translation initiat...	[more]
gi\|1009109779\|ref\|XP_015892083.1\|	8.7e-69	60.0	PREDICTED: translation initiat...	[more]
gi\|747065489\|ref\|XP_011079383.1\|	1.6e-67	58.7	PREDICTED: translation initiat...	[more]
gi\|720030467\|ref\|XP_010265524.1\|	6.2e-67	58.2	PREDICTED: translation initiat...	[more]

BLAST of Spo04653.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9QTU5_SPIOL	1.1e-160	100.	Uncharacterized protein (Fragm...	[more]
A0A0J8EKF4_BETVU	1.2e-106	73.4	Uncharacterized protein OS=Bet...	[more]
M5W2Z1_PRUPE	8.2e-66	58.7	Translation initiation factor ...	[more]
K4CB54_SOLLC	1.4e-65	54.7	Translation initiation factor ...	[more]
A0A0A0LH34_CUCSA	1.4e-65	56.0	Translation initiation factor ...	[more]

BLAST of Spo04653.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5


Match Name	E-value	Identity	Description
IF3_NOSS1	1.3e-27	45.8	Translation initiation factor ...	[more]
IF3_ANAVT	1.3e-27	45.8	Translation initiation factor ...	[more]
IF3_MICAN	3.7e-27	45.9	Translation initiation factor ...	[more]
IF3_NOSP7	3.7e-27	45.6	Translation initiation factor ...	[more]
IF3_PROMA	4.8e-27	42.0	Translation initiation factor ...	[more]

BLAST of Spo04653.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 3


Match Name	E-value	Identity	Description
AT4G30690.1	1.2e-65	53.9	Translation initiation factor ...	[more]
AT2G24060.1	3.2e-61	51.0	Translation initiation factor ...	[more]
AT1G34360.1	1.3e-9	27.5	translation initiation factor ...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001288	Translation initiation factor 3	PANTHER	PTHR10938	TRANSLATION INITIATION FACTOR IF-3	coord: 44..297 score: 4.0
IPR001288	Translation initiation factor 3	TIGRFAMs	TIGR00168	TIGR00168	coord: 89..256 score: 2.1
IPR019814	Translation initiation factor 3, N-terminal	GENE3D	3.10.20.80		coord: 89..156 score: 3.2
IPR019814	Translation initiation factor 3, N-terminal	PFAM	PF05198	IF3_N	coord: 89..154 score: 1.5
IPR019814	Translation initiation factor 3, N-terminal	unknown	SSF54364	Translation initiation factor IF3, N-terminal domain	coord: 88..156 score: 4.84
IPR019815	Translation initiation factor 3, C-terminal	GENE3D	3.30.110.10		coord: 162..256 score: 5.7
IPR019815	Translation initiation factor 3, C-terminal	PFAM	PF00707	IF3_C	coord: 164..233 score: 3.3
IPR019815	Translation initiation factor 3, C-terminal	unknown	SSF55200	Translation initiation factor IF3, C-terminal domain	coord: 164..235 score: 2.09
None	No IPR available	PANTHER	PTHR10938:SF0	TRANSLATION INITIATION FACTOR IF-3, MITOCHONDRIAL	coord: 44..297 score: 4.0

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006413	translational initiation
biological_process	GO:0006446	regulation of translational initiation
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003743	translation initiation factor activity