Spo04680.1 (mRNA) | SpinachBase

Overview


Name	Spo04680.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	R3H-associated amino-terminal domain protein
Location	chr1 : 6731232 .. 6741953 (+)
Sequence length	2142

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAGAACATTTCCCTTTCAAGAAGGCAAATTGACAGAAATTGACCTCTATAATGGGTAAAGATTAAGGAAGTGGGAGAAGTAAAATCAAACAAAAACAAACCAAACCAAAGTATATTCTTTAATCTTTATCCAACAATATTCGACTTCAATTTCCTTGTAACACAGAACATCAGAATATTCTAATAATTTTGTGCCTCATAAATTGTTGAGCCTTCGTTTCAATTTTCCTTCACACCTCGGAATTCATTCATCTTCTGCTTATCGTGTTCTTCCCCCTTTTCTCGTGAATCACGAACCCTAATTTACGAACTCAGTACAACGACAGAGAGAATCTTCACGAATTGTTGTTTGTTTCATCATGGCTGCTCAGAACATTATACAGAATGACAAAGATTTGCTTCTCTACACTTCCATTTTCGGAGACGATGAAGGTTTGTTACCCACTTTTCTAGATTTCCCTGTTTTTGAGTTGGGTTTATTATTTTGTTGTTGTTGATTTGATGCGAATTATGGTTTGATTGTCGCAGATTTCACTTGAAGTTAATTTTTTGATTTTTTTTTNATGGTTTGATTGTCGCAGATTTCACTTGAAGTTAATTTTTTGATTTTTTTTTTTTTTTGCAGGAGGTACAGTTAAATCTCGGGGCGCATTGATTGAGAAGAAGATTGAAATGCTCGAGGGCTTAGCTTCCAATGTAATGTCTTTGTATTTCCTAGTGTGATTTTTTTTGTAAATTAATCTCCTGCATTATTGTCTGTTTCTGTACCAATCCGCAATCTGTACATTTGATTGGTCATGTGGATCCCAAAGTAATATTTCATCTTTGATATGAGCATTCATAGTCTATAATCTATACATGATAATTGGTTTTTGATATTTTTTTAGTCATTAGAATTATGTTTAATTGGGGTTGAAATTTTATGCTGGTAAGGAACATTGGAGCAATCTTTTTGTTGTTGTCATCTTGTCATGCCTCTTTTTACTCAAGAAATGAAGGAATTTTCCTTATTAGGAATTACATTGTGTTTGAACCATCACTTTAGTATATACTCCGTAGTCATTATTTAGTAACTAGTTTTGAAGCCCGTGCGATGCACGGGTTTCGTTTTATTTTGTTTATTTTTAATAACTATTTTTACTTATGTTATTAGGTTGCATTTTGGTGAATACATAGGTTCACCAAAATTAAAGTCAAAGATGTGATTGTGTATAGGTTATGAAAAATTAAAAGTAAAGATGTGATTGTTGATGGGTTATGAGTTTAAACTATACGATCAATTTATAGGACTTAATCAATTTATGATTAGAACTGTCAATTCTTATCTTAACTTGGAATCATGGTTTGATTATAATTTTCAATTTCTATCTTGAAAAGTTATAGTGCATTGTGTAACTTGAAGTTATAATTTGCTTAGGACTTTTATGATTTATATGTATGTTGTATTCTAATTTTATCATGGAAATAATGGGATAATAAATTTAGATATTTAGAATATCATGTGAGCTTATTTGGTAATTACGTAGTAATGTCCTACTCCAGTACTCCTTACTATATTTGACTGTTAGTCTTGAATAATTAGAAAATTTTGATATTCCTTATACTATATATGTTATGTGCATCTAATATCATATCCTATTCGGTTGGCGATTATACTACGTAACAACTATTAAGAAAGGATATTAGCATTGTAATTCTAACGTAGAGTTATATTAGTAGTCAAAGATATGTGACACCTAAATCTTATTTTTCATTGGCCGAAACCAATCTCTATCTTACGTGGCGCTCTAATAATTAAACAATTTTTTAGTTCAAAAATAAATTACAAATCTTTTGGCCGAAACCATTAGTAATCCTACGTGGCGCTCTAATAGTTCAGCAAACGGCAACTTTTGTGTAAGACCGCCTCACCGAAAAGACCACTTTGATTGTTTAACTAATTGGTTGCATTGCTTAACTAATTGGTTTAAGTGCTTTACTAATTAGTTTCAATACTTAACTAATTGATTACAATGCTTAACTAATTGATTTTATTGTTTAACTAATTGGTTTCATTGCTTAACTTATATGACACAGATGTGGTCTTTTGTGTAAGACCGTCTTATATAAAAGTTTGTATTCAGCAAATATGCCTCCTTTAGTTTTGCAAGATATGTTTTGTGAAATGGCTTGTTACCTTTGGAGAAGATTTTTTCCAGTGTGTAAGAGGTTTGGGTTAGGTCTTCAAGTGTACTAGCTTAGTTGCAAATTTATTTTCTGGGGTTCGGTAAGAGAAAGGATAAGAAGCTTCTTTGGTGAAATGCAGTGATGGCGATATAGTGGACCATTTTGCTAGAGCGGAATGGTCGTACTTTTAGTTGTTTTTGTCTTGCGTGATGTAATATGGGATAAAGTGACTTTCCTGGCTTTCTTATAAGCAAAGGCAGCTGGTGCTTCCCCAAATTATTCGATATAGGAATGTACAGAGCAATTAGGCTAATTTGTAGTTGTGTTTTTCTGTGAGGAAATTTTGTGATCTTAATTTATCCTATAGATGTTTTAATAAAACATTTATTATTTGGAAAAAAAATTATACTTCGTAAGATAATCAGCAAGTTGTTAAAATTGGGTTTTATAATTTTTCTTTTCTTTCATCTATATTCATGTGGGTGGGGAGATGAGATTTATTAACTTTTTGTTCTTATTTTTCACCGGTATATGCAGGGAGATGCATGTACTGTAGCTAAAAACTTTCAATGAAATTTTAATGCAACAAATGAAGGTTCTTGGGGGTTGAAAGGGGCCAAGTTCCCCGTGTGTCCCCTTAGTTGCTCCATCCCAGTTCTTATGAAGGTTGATAAGGTATTCTGGGTTTCATCTTAAGCGGGGAACCTAGAAACATTTTCTTCCCCTGTTCCAACACATTCATTGATCTTGTTTGGTATTTTGAAATTAGCATCTGGTTTGCTGATAAGCTGTAACGATGGAAGATGAGTGATAAGATAAATTCATATAAAGAATGAGCGTAACTCATTATCTGCTGCCCATTCTTTCCTGTAATATTTTAACTTTTAGTTTTTGGAGTCGATATGGATGTCAAAACCTCTTCGCTTCCTTTCCATGAAGTAGAAGATGGTCGTTCCGTTATTGCTTAGACACTTAACCCCCCCCCCCCCCCCTTTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAACCCCCCCCCCCCCCGCTTGTTGCGGGAGCCTCTTTGAAGGCACTGGGGTAATGATAATGATGGAGACACGGAGTCGATGGATTAATGCTTTCTTTTCCTAGCATTGTTGTTTTCATCCTAGTCCTCCTCCTCTTCATTTTTCCCTGTCCTTTGATGGCACCTTTTCCCTTTTTCTATTTAGATGATAAGCATTGTGGAAAATAATTTAGGGAAAACTTAATCAGTCTACTTGCCAACACCAGAAAATAATCTACCTACTTAAATTTCTGTTAGATGCTTTTCACTTTTGAAAAAAAAACTTCTTGAACTACCGTGGTCTCACTTGCTTTCCCAAGGGTTGTGGCTAATATCTGGGTTGGCCGGTTGGGTTATGTTCTTATCTTAGTTTAAAAAAGCGTTCCCAAGGCGCGCCTAGGCGCAAGGCTCACCTAGGCTCAGCCTTCGGCGCCTTGACCTCTCCAGGCTCACTGATGTCAACCAGGCGCGCGCCTTTGTGCGCCTTAGGTAAGGCGTAAGGCGCAACGCCTTGTGCGCCTTCGTTCTTCAGGCGCGGTAGGATGACGTGGACCTTTTATTTACATTTTTTTCCTTTTTAATGATATAAACACACCCCATGTGACCTATCAACGGTCATATCTCTACAACGTTAGCTTTTTGAGTAGTGGAAGTAGCATTATGAGTTAATTTTCATATTCCCAGCTTTTAATTACCATGGAAGGTTCTAATTCTGGCACTCCATCGACGGGATCACGCAATGCTTATGAACCGGCAAGAAAATATGGCACTCCAATAGAAATATGTTGTTTTGAGTATAAATTGTGTTAATTTTTTTCTATACAGAACTTTAAGGTTTATTAGAAAATTATGTGCGCCTTGTATCCAAAAGGCGCGCGCCTGAGCCTTGCGCTTTGCGCATAGGCTCCATGACCCTTGTGCGCCTTAGTGCGCCTTGCGCCTTTTAAAACTAAGGTTCTTATGTACATATAATATTCATCCTTTTAGCAGCCTTTTAAATACCGGGTAGATGAGTTTAAATTTTACCCTTTCTTTAAATATAGTTGAAGAGGCATCAGGCATGTACATATCCAATCTGATGGTTTGGACCTTTGGTATATGATGTATACCCCCATGATTTTCTTTCCAATGTGCTAAATAACAAACAGCAAATTAAAAAGGGAGGATAAGTTAAGAGAGATTATGAGCAGGGAAGAGGAATGATTGAACTATAAGAGTTGCATTACTTGCATCTTCTTTGACTCTTTTCTTTGATAGTTTTTAGGGACTACGATCTCTAATAAGCTTAATTCACTTTTTGGCTTTTCTTAATAACTTCAAATTCACTCTTTATCTTCCTTAACTATTTAGCTGTTGTAAAATATACTTCCCACACCCTGGCCAATTAAGTGCTTTGTCTGCACTATCCGCTGAGTAGCTATTAATCTCAACACACTTATTGCTCTCTGCATTTTTCTTTCGAACTTGATGCAGGTTGGCAATCGACGATCACGAAGATTATTGAATGACCGACTTTTGATGGAGCTCGTCCCTCGTCTTAATGCCGAAGAAATTAGGGGATTGTTTGCTCCACCACCCTGGGGTAAGTTGCTTCATATTTAGATTTTATTTTTATTTTTAGGCCCTGAACCCGCAAGTTCACTCTTTGTTTAGATAACAAGATAAAAGGCAAAAGAAAGGGAGGGGAGGGAAAAGAAAGGGAGACGAAAGGTGAAGCTCCTCATTTCCCCTCCAAATCTCTCCAATTTTGGAGGGATGGCTGTTTATTAAATGAGGAGCTCCCTGTCCCTCCCCTGCCTGCCCCCAACCCCTTATCCAAACAAGGGAACACGTTGCTCCCTTTCCCTTCTCTCCCTTTCTCTCCATTTCAACTTATCCAAATAAAGTGTTAGAGTTTAGATCTTGGGATGCTTCTTTGGTAGTCTGGTTACTCAAAGAATTACCAATTGCTTCTGAAGAAGAGCTTTGCTAGGAAGTTGTTTGCTCGTGATACCGGGCTAATAATTTGTGATTTTAATTTTTATGTTGATGTATGTGACTCATGAGTGGGCATTAGTTAGGAGGTGCTTAGTTAACATTCCCTGATGGGTGGGTTGTAACTGGCTTCTTTTCCTGTTATTGATGTATGGTTTGTTGCAGGTGAGGAGGTTCCATTGTCATCGTTTTGCATGGCCAATGTGGGGGATTGGGACAAAGTTAGGAACACAGACATGGATAAAGAGGTCATTTTCTTTCCATCTCATACCACCCTTACTCGCTTTCCATCTCATACAACCCTTACTCGCTTCTTTCCATAAAGATTCATCTAAGGTAATAAATTTGTGCCTTAAGACAGGAATTCAAGATTTTTAAGGCTATGTTTGTGTAATCTTGAATGTTCTTGCTTCCAGTTTCCAATTGTTGACAATTATATGCAATTATTTGTCTAAAATATTGTTCGTCGTATGAGTCCTTAATTTTGAAGAGTAAGGATGTAAAGCTAGATTACACATTACACAGAAAGAGTTGTTTGCAACAACTTTGAATATACTAATTTAGCAGCACTAGTTTCCCAAACTATGCAACTTCAAATGAATATACTATTTCCAACAACTTTTTCACGTGTATAAGTATTCTTGTAGGCTAGCATTTTGGAGTCCATTAGACAAAGCTCTCAGAAGCGTAAAACCCACGTTGACGCTGACAAAACGGCTGTCATGAATGCATGGCATAAAATTGATTGTCGAACAAGGGAAGCTTTTCGACGTAGCTTTCTCCCTGAGCTCATCGAGGGCTATGAGGTATTGTGCCATACTGTTTATTTTGTATTTCTCAATAGAAGTTTTGTGCTTATATTTTTCCCATTCATTTATGAGATAAAAGAGTGATGTTAGTTTTGACTATTTTTCCCACTTGGTTCTCAATAGAGAAAGGGAAACTAGGGGAAAAGAAACATGAAAGGGAACTTAAATATATATTTTTGTTTCAAAGGGGAAAGTGAGAAACTGAAATCATTACACATCATATCTGTTCGGTTGGTATTTTCTTTCAATATCCACATTCCTCGTGTTATTCTCTCTTTCAACCACCTTTATCTTCATCCTCTATTGCTCACCACTACTATTTCCACCTCTTCCCCTTCATAACCTCCTCCACTACCATCTTTCTTCTCCGTCATCCATTGATGTCGCTGCTTCCATCTCATATAAGGACATCGTAATCACATTTTGAAGACAAAACACCAAAATTAATAAAACATGACCCCTTTCCAACAATAAGAAAGGCTTATTTGGCTTAATTCGACCATAAAAGTGCGAGATTTTTTGGCCAATTTCAACCATCTAGACTCTAAAACTTTATTTCATATATAAAGGGTATGTCTTAAATCTTAATCTTTCTCTCTCCCTCTCTCTACACACAATTGATGGTTGTGGTTGTTGGCTGTGGAGGTGGTTATCTAGGTGGTTCATGACTTCATGGGATGTGTTGGAGATTCTTTTGGCTGATATGGGTAGGATGGAAGGCTAGTTGTACGGCTGTTAGTGGGGGTGGTGGTAGTGGGGTAGGATTTTTGATGGGAGGAGGGATTGAGATGGGCTGTTTGTGAAGCTGATGGGCCGGGTTGTTGGTGGCGCTGATGGAGCCACGGTGGTTGGAGTGGTAGGATCAAGCTACGGATTGGTGTTGTGAGGGTTGTTTGGTGGTGGATATAGGATTAGGATGGTGTTTAGGGTGGTGGTCAAGGTGGGCCAATGGTAGTCATGGTGTATAGGAGCTTTTAGGGGTTATGTAAGTCCCGAGCGGGGGTGTGGTAATCAAGGTTGAGGGAGTTGAGGGAACTAACACTAATTAAAGGGAAAAGTAATTTTCAAAATCACCAACCATACATGTTCTAAGGGAATCAGAGGTTCAGATTGCTTTACTTGATTACCACATATCAAACAAGCCCCCGCAAGTTTGGTTTGAGCTCACTTGCTGTCATAAAAATTGTTTAAGGCCATTTAAATTCTGTAGGATTAGCTAGCCTTTGTTCTTTTTGGCCGATGCACTTTGATCGAGGCCCTCCTAAGCGTGTGGGCCCTTTGTTTCAGGTTGTTCTTGCTCCACCTCATGCCTTCCTTTCTTTCCCGTTCCCTTTCTTTTCTTTCCCTCCCCTCCCCTTTTGTCTTGCTATGCAAACACAGTATAAGTGTTCTAACATTTCTGGTACATAGTTCAAGTGTGGTATGTGGCGAACATCAATTGTTCCATTATCTAGTTGTACATGTTAGAGGTGGTGAATAATAGGTTCACAGTTTATCATATTGTTTACAATACATGTTTTGGGAAACAAAATTCTGACTTTCTTCTGGGATACGCATTCTCTAAAGTGTAAAGAGACAACTTTGTCAAACCAACAACAACATAACGCCTTTGGTTTTGTTATTCCTTATGGCAGAGGAATGAACTCGCTGATATTAATCCTAACATAGGTGAACTTTGTTTTCAGTAGGAGAATAATTTGTTTATGTTTCTGCAGGGAACTTAGTAGAAGTGTGAGAAGTCTTGGTTTGAAAATGATCATTCATGTTCAAATAGCTAATTTTTTCAATAAAGAAAAAGCTGCATCTGTTGGAGAGGACACAGGCTCCTCTTGTTTTGAACTAGTAATACCACTGGAAGGCATAATATTGAATTTAGATTTTTTTTTACTCTGAATTAGGTTTTTTTTTTTTGGGATCTATTTCAGCCTATAGTTGTTTGAGTAGTTTCTGAATAGCAGTAAGCTTTTGTTCTTGTTTTTGTTTATTTGTAGCACGTCTAAGTTTTAAATGAGAAAGCCCTTTGGGAATAGCAGTAATTGTCGTATTGGCAAAGTTGTTATTGGTACTCAGCTTCCCCAGCCCTTGTCAGTCCCCACTAACATGTTCCTTGTCTTGCAATTTTCTGATGCTTTATTTTCTTCCTTTCCAGAACCGCATACGCGCATTTATTGGGAACGGCAATGATTCTGAAGTTCTGTTGCTTCAGGTCCAAGATCCTTTCCACAGGTTGTTGCTTCATGGTGTGTGCGAGGTAATAGCCTCTACAACTGATGCACATTTAGCTTTTTTGGTAGAGACAATGTTGTCTTATTTGGCTCCTTCATTCAAAGATCAGCATCTCAGTGATAGGTGCTAGAAAGACCTCGGACAGTTTGCCAAATGGTTAAATTTAAATGCCCGATATGGGTGGTTTAAAGTGATCTGGTGTGAAAACGGTATTTAAAGTAACCTTGTATAGTTGATGTGTTAAACCTCAGAAAGCCACTGAATTCCAGGTCCATGATAGTTAGTATGCGTTAAACCTTATGTACCCCCCCTCCCCCCTCCCACCCTCCTGGAATTTTTTAATGGAGCTTGTTATAAGTAACTTCTTGGGAATTTAAATGGTTATGGCCTTATGGGTTTAAGAAGGAAGTTCGGAAATGAGGAGGATATTTTAAAATTATAAACAGAATAGGATCTATTCTATATTTTCATGGTCATAATTTGGAATTAAAAAATTGTTGGAAGTTATTTATTTATTTTTTTGGTGCAAGACGACAAATGATGTAGACGGGATTCAATCCCAGGTTTTGGGTACCACCCCCTCAAGACTTTACCAACTACACTGGTTGACATCCACAAAAATTGTCAAAAGTTATATGAAGTGTGAGATAACTTGCATGTCCATGTTATGACTAAATGAAGATGTGCATACCCAAGTTTGGCATAGTGGTGGGAAATCCACTTGGTGAATTGAAGTTCTCAGATTCGAGTTCCAGTGCTAACACTTATGGAAAGTGTACCTCCCCTTCCCTCCTCTCTAACTCGGCTTAAAACATGGGCTTGCTTAAATGTGGACCAGGCCTAGACTGCCAACTGCCAAGTGCCAACCCCCAAAATGACAGTAATATTCACCATCCATAAAATATAGAATGAAAATTTGATTTAATTAGTGACAATCATGTAGGCAACCAGCCAAAAGGGCTTTTACTCTTTTAGGTTATATGCCTAGGATTCATGAGGGATGGAAATTTCAGTGTTACATCTGTTATGACAATATTGTGTTGCCTCTTCCTCTTGCTGTAAGATACTGAGGTCATATTTGTGAATAAAATAGCAATCTCACTCGCGATTTTGTTGCTATGTGGAACAGTTCTATGACTTGATCTCAGTTACAGAGACACAAAGTAGAGGCTCGAAATCGGTGAAGACGACAAAGATACAGAAGAAAAAATCGGGTCCGTTGGAGATTCCTAGCCTTACACTGTCCCGTTTTCTGAAAATGTCCAAGGAAGGGATTTGGTGACTTCGTGGGATGTGAAATTTGTTGTAATTTATAAATTGTTGCTATATCCCACACTAATAAACTCAGTTGCCTTGTTGGAACTGTCACAATTTATTTCAAGGATATTGATTAGGATGTAAGGCTTGGCTGCATTTGTAAATAATAATAATGTTTTAAGTTTCTAACTTCCAACATCCGAAACTGTTTCTAAAATTCTTCTTAATCTGATTGTATATATGCTAGAATTGCAGTTTCTAAAAAATTTCTTAAGCGGATGGCAATTCATGTACTATTAACCGTACGTGAAGTCTGTTTTTGGTGTTAGTACTCGGTTGACCCTTAGGGCACGTTTGGATTGGGTGCAATGGATTATTGGGGTAATAAAAGTCAAACCACTATAATAAAATGACAATAAAGGTGAATTGAGGTGGTTGCAAGGAGGGTGGTGTGGTGGTATTGTGATGAGAAGTTGTGGTAGTGGTGGTGTTGTAAAGAGAAGGGAGGAAGGGGGGAAGTTATTACCCCAAATGAGGGTAATAATCACCCTAGTGGGATGGTGGGTAACTATTCCCCCCATGATGAGGGTATTTGTTCCCTCTTTCCTTTTATTTTTTTCTTGCCAACACTAGCTTGTTCCCCTTGCCACCATTTCATCTCCTCATCATCACCTTCAATTACCTTAGTTTGACTTTTATTACCCCTTTAATACATTACCCTTAATCCAAGCATGCCCTTAGGGTTAATCCGGAATCGGGGCGAGTTTTGGGTGGATAGGTTTCAGTCCTTTCCCAATTGTTGTTGTAGGGGATCGAACACGGGGTCCTCCCTACCAAGTTCGGCCTAAATCACCACTGAATCAACATGCAATCGGTACGTGAAGTATGTTCTCCCTCCATAAACTCCAGGGGTTGGATTGGGAGATGTCTTAGGGTGGGGGTTAGAGTTGGGCATGGACTGGTAGCCAGCAAACGGGCTGCCCGAGCCCAGCATAAAATTGGTTTGGCAAGACAAGTGCCCGATGTGAATGTGGCATGAAATGAGAGGCACAACAAT

mRNA sequence

AAAAGAACATTTCCCTTTCAAGAAGGCAAATTGACAGAAATTGACCTCTATAATGGGTAAAGATTAAGGAAGTGGGAGAAGTAAAATCAAACAAAAACAAACCAAACCAAAGTATATTCTTTAATCTTTATCCAACAATATTCGACTTCAATTTCCTTGTAACACAGAACATCAGAATATTCTAATAATTTTGTGCCTCATAAATTGTTGAGCCTTCGTTTCAATTTTCCTTCACACCTCGGAATTCATTCATCTTCTGCTTATCGTGTTCTTCCCCCTTTTCTCGTGAATCACGAACCCTAATTTACGAACTCAGTACAACGACAGAGAGAATCTTCACGAATTGTTGTTTGTTTCATCATGGCTGCTCAGAACATTATACAGAATGACAAAGATTTGCTTCTCTACACTTCCATTTTCGGAGACGATGAAGGAGGTACAGTTAAATCTCGGGGCGCATTGATTGAGAAGAAGATTGAAATGCTCGAGGGCTTAGCTTCCAATGTTGGCAATCGACGATCACGAAGATTATTGAATGACCGACTTTTGATGGAGCTCGTCCCTCGTCTTAATGCCGAAGAAATTAGGGGATTGTTTGCTCCACCACCCTGGGGTGAGGAGGTTCCATTGTCATCGTTTTGCATGGCCAATGTGGGGGATTGGGACAAAGTTAGGAACACAGACATGGATAAAGAGGCTAGCATTTTGGAGTCCATTAGACAAAGCTCTCAGAAGCGTAAAACCCACGTTGACGCTGACAAAACGGCTGTCATGAATGCATGGCATAAAATTGATTGTCGAACAAGGGAAGCTTTTCGACGTAGCTTTCTCCCTGAGCTCATCGAGGGCTATGAGAACCGCATACGCGCATTTATTGGGAACGGCAATGATTCTGAAGTTCTGTTGCTTCAGGTCCAAGATCCTTTCCACAGGTTGTTGCTTCATGGTGTGTGCGAGTTCTATGACTTGATCTCAGTTACAGAGACACAAAGTAGAGGCTCGAAATCGGTGAAGACGACAAAGATACAGAAGAAAAAATCGGGTCCGTTGGAGATTCCTAGCCTTACACTGTCCCGTTTTCTGAAAATGTCCAAGGAAGGGATTTGGTGACTTCGTGGGATGTGAAATTTGTTGTAATTTATAAATTGTTGCTATATCCCACACTAATAAACTCAGTTGCCTTGTTGGAACTGTCACAATTTATTTCAAGGATATTGATTAGGATGTAAGGCTTGGCTGCATTTGTAAATAATAATAATGTTTTAAGTTTCTAACTTCCAACATCCGAAACTGTTTCTAAAATTCTTCTTAATCTGATTGTATATATGCTAGAATTGCAGTTTCTAAAAAATTTCTTAAGCGGATGGCAATTCATGTACTATTAACCGTACGTGAAGTCTGTTTTTGGTGTTAGTACTCGGTTGACCCTTAGGGCACGTTTGGATTGGGTGCAATGGATTATTGGGGTAATAAAAGTCAAACCACTATAATAAAATGACAATAAAGGTGAATTGAGGTGGTTGCAAGGAGGGTGGTGTGGTGGTATTGTGATGAGAAGTTGTGGTAGTGGTGGTGTTGTAAAGAGAAGGGAGGAAGGGGGGAAGTTATTACCCCAAATGAGGGTAATAATCACCCTAGTGGGATGGTGGGTAACTATTCCCCCCATGATGAGGGTATTTGTTCCCTCTTTCCTTTTATTTTTTTCTTGCCAACACTAGCTTGTTCCCCTTGCCACCATTTCATCTCCTCATCATCACCTTCAATTACCTTAGTTTGACTTTTATTACCCCTTTAATACATTACCCTTAATCCAAGCATGCCCTTAGGGTTAATCCGGAATCGGGGCGAGTTTTGGGTGGATAGGTTTCAGTCCTTTCCCAATTGTTGTTGTAGGGGATCGAACACGGGGTCCTCCCTACCAAGTTCGGCCTAAATCACCACTGAATCAACATGCAATCGGTACGTGAAGTATGTTCTCCCTCCATAAACTCCAGGGGTTGGATTGGGAGATGTCTTAGGGTGGGGGTTAGAGTTGGGCATGGACTGGTAGCCAGCAAACGGGCTGCCCGAGCCCAGCATAAAATTGGTTTGGCAAGACAAGTGCCCGATGTGAATGTGGCATGAAATGAGAGGCACAACAAT

Coding sequence (CDS)

ATGGCTGCTCAGAACATTATACAGAATGACAAAGATTTGCTTCTCTACACTTCCATTTTCGGAGACGATGAAGGAGGTACAGTTAAATCTCGGGGCGCATTGATTGAGAAGAAGATTGAAATGCTCGAGGGCTTAGCTTCCAATGTTGGCAATCGACGATCACGAAGATTATTGAATGACCGACTTTTGATGGAGCTCGTCCCTCGTCTTAATGCCGAAGAAATTAGGGGATTGTTTGCTCCACCACCCTGGGGTGAGGAGGTTCCATTGTCATCGTTTTGCATGGCCAATGTGGGGGATTGGGACAAAGTTAGGAACACAGACATGGATAAAGAGGCTAGCATTTTGGAGTCCATTAGACAAAGCTCTCAGAAGCGTAAAACCCACGTTGACGCTGACAAAACGGCTGTCATGAATGCATGGCATAAAATTGATTGTCGAACAAGGGAAGCTTTTCGACGTAGCTTTCTCCCTGAGCTCATCGAGGGCTATGAGAACCGCATACGCGCATTTATTGGGAACGGCAATGATTCTGAAGTTCTGTTGCTTCAGGTCCAAGATCCTTTCCACAGGTTGTTGCTTCATGGTGTGTGCGAGTTCTATGACTTGATCTCAGTTACAGAGACACAAAGTAGAGGCTCGAAATCGGTGAAGACGACAAAGATACAGAAGAAAAAATCGGGTCCGTTGGAGATTCCTAGCCTTACACTGTCCCGTTTTCTGAAAATGTCCAAGGAAGGGATTTGGTGA

Protein sequence

MAAQNIIQNDKDLLLYTSIFGDDEGGTVKSRGALIEKKIEMLEGLASNVGNRRSRRLLNDRLLMELVPRLNAEEIRGLFAPPPWGEEVPLSSFCMANVGDWDKVRNTDMDKEASILESIRQSSQKRKTHVDADKTAVMNAWHKIDCRTREAFRRSFLPELIEGYENRIRAFIGNGNDSEVLLLQVQDPFHRLLLHGVCEFYDLISVTETQSRGSKSVKTTKIQKKKSGPLEIPSLTLSRFLKMSKEGIW

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo04680	Spo04680	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo04680.1	Spo04680.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo04680.1.exon.1	Spo04680.1.exon.1	exon
Spo04680.1.exon.2	Spo04680.1.exon.2	exon
Spo04680.1.exon.3	Spo04680.1.exon.3	exon
Spo04680.1.exon.4	Spo04680.1.exon.4	exon
Spo04680.1.exon.5	Spo04680.1.exon.5	exon
Spo04680.1.exon.6	Spo04680.1.exon.6	exon
Spo04680.1.exon.7	Spo04680.1.exon.7	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo04680.1.utr5p.1	Spo04680.1.utr5p.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo04680.1.CDS.1	Spo04680.1.CDS.1	CDS
Spo04680.1.CDS.2	Spo04680.1.CDS.2	CDS
Spo04680.1.CDS.3	Spo04680.1.CDS.3	CDS
Spo04680.1.CDS.4	Spo04680.1.CDS.4	CDS
Spo04680.1.CDS.5	Spo04680.1.CDS.5	CDS
Spo04680.1.CDS.6	Spo04680.1.CDS.6	CDS
Spo04680.1.CDS.7	Spo04680.1.CDS.7	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo04680.1.utr3p.1	Spo04680.1.utr3p.1	three_prime_UTR

Homology

[Close]

BLAST of Spo04680.1 vs. NCBI nr
Match: gi|902238435|gb|KNA25196.1| (hypothetical protein SOVF_008640 [Spinacia oleracea])

HSP 1 Score: 499.6 bits (1285), Expect = 3.200e-138
Identity = 249/249 (100.00%), Postives = 249/249 (100.00%), Query Frame = 1

		  
Query: 1   MAAQNIIQNDKDLLLYTSIFGDDEGGTVKSRGALIEKKIEMLEGLASNVGNRRSRRLLND 60
           MAAQNIIQNDKDLLLYTSIFGDDEGGTVKSRGALIEKKIEMLEGLASNVGNRRSRRLLND
Sbjct: 1   MAAQNIIQNDKDLLLYTSIFGDDEGGTVKSRGALIEKKIEMLEGLASNVGNRRSRRLLND 60

Query: 61  RLLMELVPRLNAEEIRGLFAPPPWGEEVPLSSFCMANVGDWDKVRNTDMDKEASILESIR 120
           RLLMELVPRLNAEEIRGLFAPPPWGEEVPLSSFCMANVGDWDKVRNTDMDKEASILESIR
Sbjct: 61  RLLMELVPRLNAEEIRGLFAPPPWGEEVPLSSFCMANVGDWDKVRNTDMDKEASILESIR 120

Query: 121 QSSQKRKTHVDADKTAVMNAWHKIDCRTREAFRRSFLPELIEGYENRIRAFIGNGNDSEV 180
           QSSQKRKTHVDADKTAVMNAWHKIDCRTREAFRRSFLPELIEGYENRIRAFIGNGNDSEV
Sbjct: 121 QSSQKRKTHVDADKTAVMNAWHKIDCRTREAFRRSFLPELIEGYENRIRAFIGNGNDSEV 180

Query: 181 LLLQVQDPFHRLLLHGVCEFYDLISVTETQSRGSKSVKTTKIQKKKSGPLEIPSLTLSRF 240
           LLLQVQDPFHRLLLHGVCEFYDLISVTETQSRGSKSVKTTKIQKKKSGPLEIPSLTLSRF
Sbjct: 181 LLLQVQDPFHRLLLHGVCEFYDLISVTETQSRGSKSVKTTKIQKKKSGPLEIPSLTLSRF 240

Query: 241 LKMSKEGIW 250
           LKMSKEGIW
Sbjct: 241 LKMSKEGIW 249

[Close]

BLAST of Spo04680.1 vs. NCBI nr
Match: gi|731346053|ref|XP_010684251.1| (PREDICTED: R3H domain-containing protein 4 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 425.2 bits (1092), Expect = 7.600e-116
Identity = 207/249 (83.13%), Postives = 228/249 (91.57%), Query Frame = 1

		  
Query: 1   MAAQNIIQNDKDLLLYTSIFGDDEGGTVKSRGALIEKKIEMLEGLASNVGNRRSRRLLND 60
           MA  +I+Q DKD +LY+SIFGD+EG TVKSRGALIEKKIE+LE LASNV NRRSRRLLND
Sbjct: 1   MATPDILQKDKDFILYSSIFGDEEGDTVKSRGALIEKKIEILESLASNVSNRRSRRLLND 60

Query: 61  RLLMELVPRLNAEEIRGLFAPPPWGEEVPLSSFCMANVGDWDKVRNTDMDKEASILESIR 120
           RLLMELVPRLNAEEIRGLFAPPPWGEEVP+S FCMANV DWDKVRN DMDKEA+I++SIR
Sbjct: 61  RLLMELVPRLNAEEIRGLFAPPPWGEEVPVSPFCMANVDDWDKVRNVDMDKEANIVKSIR 120

Query: 121 QSSQKRKTHVDADKTAVMNAWHKIDCRTREAFRRSFLPELIEGYENRIRAFIGNGNDSEV 180
           Q SQKRK+HVD+DK AVMNAWH+IDCRTREA RRSFL ELIEGYENRIR FI +GNDSE+
Sbjct: 121 QRSQKRKSHVDSDKMAVMNAWHRIDCRTREALRRSFLSELIEGYENRIRTFIEDGNDSEI 180

Query: 181 LLLQVQDPFHRLLLHGVCEFYDLISVTETQSRGSKSVKTTKIQKKKSGPLEIPSLTLSRF 240
           L+LQVQDPFHRLLLHGVCEFYD+ISVTE Q+ GSK VKTTKI+KKKSG LEIPSLTLS +
Sbjct: 181 LVLQVQDPFHRLLLHGVCEFYDVISVTEPQTGGSKMVKTTKIKKKKSGRLEIPSLTLSHY 240

Query: 241 LKMSKEGIW 250
           LKMSKEG+W
Sbjct: 241 LKMSKEGLW 249

[Close]

BLAST of Spo04680.1 vs. NCBI nr
Match: gi|661892450|emb|CDP03608.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 339.7 bits (870), Expect = 4.200e-90
Identity = 161/249 (64.66%), Postives = 196/249 (78.71%), Query Frame = 1

		  
Query: 1   MAAQNIIQNDKDLLLYTSIFGDDEGGTVKSRGALIEKKIEMLEGLASNVGNRRSRRLLND 60
           MA   I+Q ++DLLL+ S+F D +G   K RG  IEKKIE LE L   V NRRSRR LND
Sbjct: 1   MATPQILQREEDLLLWQSLFDDPKGENEKCRGTDIEKKIEFLESLTGKVSNRRSRRWLND 60

Query: 61  RLLMELVPRLNAEEIRGLFAPPPWGEEVPLSSFCMANVGDWDKVRNTDMDKEASILESIR 120
           RLLMELVP LNAEEIRGLFAPPPWG++VPLS F M N+G+WDK R  DMDKE  ++E+++
Sbjct: 61  RLLMELVPCLNAEEIRGLFAPPPWGDDVPLSPFSMTNIGEWDKFRTVDMDKETMMIEALK 120

Query: 121 QSSQKRKTHVDADKTAVMNAWHKIDCRTREAFRRSFLPELIEGYENRIRAFIGNGNDSEV 180
            S  K+K+H DADK AV+ AWH++DCRTREAFRRSFLPELI GYE  IR F+    D  V
Sbjct: 121 GSGMKQKSHGDADKVAVLTAWHRVDCRTREAFRRSFLPELISGYEECIRDFVKETGDGGV 180

Query: 181 LLLQVQDPFHRLLLHGVCEFYDLISVTETQSRGSKSVKTTKIQKKKSGPLEIPSLTLSRF 240
           L L VQDPFHRLLLHGVCEFY+L+SVT TQS+G++++K T+I+KKK+G  E+P++TL  F
Sbjct: 181 LELNVQDPFHRLLLHGVCEFYNLVSVTVTQSKGTETLKMTRIRKKKAGDFELPNITLCNF 240

Query: 241 LKMSKEGIW 250
           LKM+KEGIW
Sbjct: 241 LKMAKEGIW 249

[Close]

BLAST of Spo04680.1 vs. NCBI nr
Match: gi|697170945|ref|XP_009594395.1| (PREDICTED: uncharacterized protein LOC104090905 isoform X1 [Nicotiana tomentosiformis])

HSP 1 Score: 335.5 bits (859), Expect = 8.000e-89
Identity = 162/250 (64.80%), Postives = 201/250 (80.40%), Query Frame = 1

		  
Query: 1   MAAQNIIQNDKDLLLYTSIFGDDEGGTVKSRGALIEKKIEMLEGLASNVGNRRSRRLLND 60
           MA   I+Q ++DLL+ +S+F D +G  VKSRG  IEKKIE LE LA  V NRRSRR LND
Sbjct: 1   MATSQILQTEQDLLMMSSLFDDPKGENVKSRGIAIEKKIEFLESLAGKVSNRRSRRWLND 60

Query: 61  RLLMELVPRLNAEEIRGLFAPPPWGEEVPLSSFCMANVGDWDKVRNTDMDKEASILESIR 120
           RLLMELVPRLNAEEIRGLFAPPP+G++VPLS FC+ NV +WDK RN DMDKEA+I++++ 
Sbjct: 61  RLLMELVPRLNAEEIRGLFAPPPFGDDVPLSVFCLTNVEEWDKFRNIDMDKEATIMDALE 120

Query: 121 QSSQKRKTHVDADKTAVMNAWHKIDCRTREAFRRSFLPELIEGYENRIRAFIGNGNDSEV 180
             + KRK  VD DK AV+ AWH++DCRTREA RR+FLPEL+  YE  +RAF  +G D EV
Sbjct: 121 GKTSKRKNCVDNDKVAVLTAWHRVDCRTREALRRNFLPELVSSYEQCVRAFAESG-DGEV 180

Query: 181 LLLQVQDPFHRLLLHGVCEFYDLISVTETQSRGSKSVKTTKI-QKKKSGPLEIPSLTLSR 240
           L+L+VQDPFHRLLLHGVCEFY+L+SVT +Q+ G+K+VK TKI +KKK+G  +IP++TL  
Sbjct: 181 LVLRVQDPFHRLLLHGVCEFYNLVSVTTSQTEGNKAVKVTKIKKKKKAGSADIPNITLCN 240

Query: 241 FLKMSKEGIW 250
           FLKM+KEG W
Sbjct: 241 FLKMAKEGFW 249

[Close]

BLAST of Spo04680.1 vs. NCBI nr
Match: gi|747066299|ref|XP_011079829.1| (PREDICTED: R3H domain-containing protein 4 [Sesamum indicum])

HSP 1 Score: 334.7 bits (857), Expect = 1.400e-88
Identity = 157/249 (63.05%), Postives = 198/249 (79.52%), Query Frame = 1

		  
Query: 1   MAAQNIIQNDKDLLLYTSIFGDDEGGTVKSRGALIEKKIEMLEGLASNVGNRRSRRLLND 60
           MA   I+Q ++DLL+Y ++F + + G VKSRG  IEKKIE LEGLA  V NRRSRR LND
Sbjct: 1   MATPEILQTEQDLLMYATLFENSKDGNVKSRGMEIEKKIEFLEGLAGRVSNRRSRRWLND 60

Query: 61  RLLMELVPRLNAEEIRGLFAPPPWGEEVPLSSFCMANVGDWDKVRNTDMDKEASILESIR 120
           RLLMELVPRLNA+EIRGLFAPPPWG++VP S FCM NVG+WD  RN DMDKEASI++S+ 
Sbjct: 61  RLLMELVPRLNADEIRGLFAPPPWGDDVPPSPFCMTNVGEWDNFRNIDMDKEASIMKSLE 120

Query: 121 QSSQKRKTHVDADKTAVMNAWHKIDCRTREAFRRSFLPELIEGYENRIRAFIGNGNDSEV 180
            SS KR+  +DADK A + AWH++D RTREA RR +L +LI GYE  IRAF+ +  + +V
Sbjct: 121 SSSAKRRDRLDADKVATLTAWHRVDSRTREALRRCYLSDLINGYEECIRAFVKDSGNRDV 180

Query: 181 LLLQVQDPFHRLLLHGVCEFYDLISVTETQSRGSKSVKTTKIQKKKSGPLEIPSLTLSRF 240
           L+L VQDPFHRLLLHGVCEFY+L+S T T+++GS+S K T+I+KK+S   ++P++TLS F
Sbjct: 181 LVLHVQDPFHRLLLHGVCEFYNLVSTTVTETQGSESSKMTRIKKKQSVSADLPNITLSNF 240

Query: 241 LKMSKEGIW 250
           LKM+KEG W
Sbjct: 241 LKMAKEGFW 249

[Close]

BLAST of Spo04680.1 vs. UniProtKB/TrEMBL
Match: A0A0K9S0B6_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_008640 PE=4 SV=1)

HSP 1 Score: 499.6 bits (1285), Expect = 2.200e-138
Identity = 249/249 (100.00%), Postives = 249/249 (100.00%), Query Frame = 1

		  
Query: 1   MAAQNIIQNDKDLLLYTSIFGDDEGGTVKSRGALIEKKIEMLEGLASNVGNRRSRRLLND 60
           MAAQNIIQNDKDLLLYTSIFGDDEGGTVKSRGALIEKKIEMLEGLASNVGNRRSRRLLND
Sbjct: 1   MAAQNIIQNDKDLLLYTSIFGDDEGGTVKSRGALIEKKIEMLEGLASNVGNRRSRRLLND 60

Query: 61  RLLMELVPRLNAEEIRGLFAPPPWGEEVPLSSFCMANVGDWDKVRNTDMDKEASILESIR 120
           RLLMELVPRLNAEEIRGLFAPPPWGEEVPLSSFCMANVGDWDKVRNTDMDKEASILESIR
Sbjct: 61  RLLMELVPRLNAEEIRGLFAPPPWGEEVPLSSFCMANVGDWDKVRNTDMDKEASILESIR 120

Query: 121 QSSQKRKTHVDADKTAVMNAWHKIDCRTREAFRRSFLPELIEGYENRIRAFIGNGNDSEV 180
           QSSQKRKTHVDADKTAVMNAWHKIDCRTREAFRRSFLPELIEGYENRIRAFIGNGNDSEV
Sbjct: 121 QSSQKRKTHVDADKTAVMNAWHKIDCRTREAFRRSFLPELIEGYENRIRAFIGNGNDSEV 180

Query: 181 LLLQVQDPFHRLLLHGVCEFYDLISVTETQSRGSKSVKTTKIQKKKSGPLEIPSLTLSRF 240
           LLLQVQDPFHRLLLHGVCEFYDLISVTETQSRGSKSVKTTKIQKKKSGPLEIPSLTLSRF
Sbjct: 181 LLLQVQDPFHRLLLHGVCEFYDLISVTETQSRGSKSVKTTKIQKKKSGPLEIPSLTLSRF 240

Query: 241 LKMSKEGIW 250
           LKMSKEGIW
Sbjct: 241 LKMSKEGIW 249

[Close]

BLAST of Spo04680.1 vs. UniProtKB/TrEMBL
Match: A0A0J8C1E0_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g163000 PE=4 SV=1)

HSP 1 Score: 425.2 bits (1092), Expect = 5.300e-116
Identity = 207/249 (83.13%), Postives = 228/249 (91.57%), Query Frame = 1

		  
Query: 1   MAAQNIIQNDKDLLLYTSIFGDDEGGTVKSRGALIEKKIEMLEGLASNVGNRRSRRLLND 60
           MA  +I+Q DKD +LY+SIFGD+EG TVKSRGALIEKKIE+LE LASNV NRRSRRLLND
Sbjct: 1   MATPDILQKDKDFILYSSIFGDEEGDTVKSRGALIEKKIEILESLASNVSNRRSRRLLND 60

Query: 61  RLLMELVPRLNAEEIRGLFAPPPWGEEVPLSSFCMANVGDWDKVRNTDMDKEASILESIR 120
           RLLMELVPRLNAEEIRGLFAPPPWGEEVP+S FCMANV DWDKVRN DMDKEA+I++SIR
Sbjct: 61  RLLMELVPRLNAEEIRGLFAPPPWGEEVPVSPFCMANVDDWDKVRNVDMDKEANIVKSIR 120

Query: 121 QSSQKRKTHVDADKTAVMNAWHKIDCRTREAFRRSFLPELIEGYENRIRAFIGNGNDSEV 180
           Q SQKRK+HVD+DK AVMNAWH+IDCRTREA RRSFL ELIEGYENRIR FI +GNDSE+
Sbjct: 121 QRSQKRKSHVDSDKMAVMNAWHRIDCRTREALRRSFLSELIEGYENRIRTFIEDGNDSEI 180

Query: 181 LLLQVQDPFHRLLLHGVCEFYDLISVTETQSRGSKSVKTTKIQKKKSGPLEIPSLTLSRF 240
           L+LQVQDPFHRLLLHGVCEFYD+ISVTE Q+ GSK VKTTKI+KKKSG LEIPSLTLS +
Sbjct: 181 LVLQVQDPFHRLLLHGVCEFYDVISVTEPQTGGSKMVKTTKIKKKKSGRLEIPSLTLSHY 240

Query: 241 LKMSKEGIW 250
           LKMSKEG+W
Sbjct: 241 LKMSKEGLW 249

[Close]

BLAST of Spo04680.1 vs. UniProtKB/TrEMBL
Match: A0A068U7M1_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00016027001 PE=4 SV=1)

HSP 1 Score: 339.7 bits (870), Expect = 2.900e-90
Identity = 161/249 (64.66%), Postives = 196/249 (78.71%), Query Frame = 1

		  
Query: 1   MAAQNIIQNDKDLLLYTSIFGDDEGGTVKSRGALIEKKIEMLEGLASNVGNRRSRRLLND 60
           MA   I+Q ++DLLL+ S+F D +G   K RG  IEKKIE LE L   V NRRSRR LND
Sbjct: 1   MATPQILQREEDLLLWQSLFDDPKGENEKCRGTDIEKKIEFLESLTGKVSNRRSRRWLND 60

Query: 61  RLLMELVPRLNAEEIRGLFAPPPWGEEVPLSSFCMANVGDWDKVRNTDMDKEASILESIR 120
           RLLMELVP LNAEEIRGLFAPPPWG++VPLS F M N+G+WDK R  DMDKE  ++E+++
Sbjct: 61  RLLMELVPCLNAEEIRGLFAPPPWGDDVPLSPFSMTNIGEWDKFRTVDMDKETMMIEALK 120

Query: 121 QSSQKRKTHVDADKTAVMNAWHKIDCRTREAFRRSFLPELIEGYENRIRAFIGNGNDSEV 180
            S  K+K+H DADK AV+ AWH++DCRTREAFRRSFLPELI GYE  IR F+    D  V
Sbjct: 121 GSGMKQKSHGDADKVAVLTAWHRVDCRTREAFRRSFLPELISGYEECIRDFVKETGDGGV 180

Query: 181 LLLQVQDPFHRLLLHGVCEFYDLISVTETQSRGSKSVKTTKIQKKKSGPLEIPSLTLSRF 240
           L L VQDPFHRLLLHGVCEFY+L+SVT TQS+G++++K T+I+KKK+G  E+P++TL  F
Sbjct: 181 LELNVQDPFHRLLLHGVCEFYNLVSVTVTQSKGTETLKMTRIRKKKAGDFELPNITLCNF 240

Query: 241 LKMSKEGIW 250
           LKM+KEGIW
Sbjct: 241 LKMAKEGIW 249

[Close]

BLAST of Spo04680.1 vs. UniProtKB/TrEMBL
Match: A5BM09_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_018232 PE=4 SV=1)

HSP 1 Score: 334.0 bits (855), Expect = 1.600e-88
Identity = 158/244 (64.75%), Postives = 196/244 (80.33%), Query Frame = 1

		  
Query: 6   IIQNDKDLLLYTSIFGDDEGGTVKSRGALIEKKIEMLEGLASNVGNRRSRRLLNDRLLME 65
           ++Q  +D+LL + +    +G   KS G  IEKKIE LE LA  V NRRSRR LNDRLLME
Sbjct: 9   VLQRAQDILLSSPLQDPSKGENEKSCGLSIEKKIEFLENLAGKVSNRRSRRWLNDRLLME 68

Query: 66  LVPRLNAEEIRGLFAPPPWGEEVPLSSFCMANVGDWDKVRNTDMDKEASILESIRQSSQK 125
           LVPRLN +EIRGLFAPPPWG++VPLS FCM NVG+WDK RN DMDK+  ++++++  S K
Sbjct: 69  LVPRLNGDEIRGLFAPPPWGDDVPLSPFCMTNVGEWDKFRNVDMDKQDGMIKALKGPSSK 128

Query: 126 RKTHVDADKTAVMNAWHKIDCRTREAFRRSFLPELIEGYENRIRAFIGNGNDSEVLLLQV 185
           RK HVDADK AV+NAWH+++CRTREA RRSFL E+IEGYE  +RAFI +  D +VL+L V
Sbjct: 129 RKGHVDADKIAVLNAWHRVNCRTREALRRSFLSEVIEGYEECLRAFIKDSGDGDVLVLHV 188

Query: 186 QDPFHRLLLHGVCEFYDLISVTETQSRGSKSVKTTKIQKKKSGPLEIPSLTLSRFLKMSK 245
           QDPF RLLLHGVCEFY+L+SVT TQS+ ++S KTTKI+KKK+G +E+P++TLS FLKMSK
Sbjct: 189 QDPFRRLLLHGVCEFYNLVSVTVTQSKDAESFKTTKIKKKKTGSVELPNITLSHFLKMSK 248

Query: 246 EGIW 250
           EG W
Sbjct: 249 EGFW 252

[Close]

BLAST of Spo04680.1 vs. UniProtKB/TrEMBL
Match: D7TPD6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0104g00240 PE=4 SV=1)

HSP 1 Score: 333.6 bits (854), Expect = 2.100e-88
Identity = 158/244 (64.75%), Postives = 196/244 (80.33%), Query Frame = 1

		  
Query: 6   IIQNDKDLLLYTSIFGDDEGGTVKSRGALIEKKIEMLEGLASNVGNRRSRRLLNDRLLME 65
           ++Q  +D+LL + +    +G   KS G  IEKKIE LE LA  V NRRSRR LNDRLLME
Sbjct: 9   VLQRAQDILLSSPLQDPSKGENEKSCGLSIEKKIEFLENLAGKVSNRRSRRWLNDRLLME 68

Query: 66  LVPRLNAEEIRGLFAPPPWGEEVPLSSFCMANVGDWDKVRNTDMDKEASILESIRQSSQK 125
           LVPRLN +EIRGLFAPPPWG++VPLS FCM NVG+WDK RN DMDK+  ++++++  S K
Sbjct: 69  LVPRLNGDEIRGLFAPPPWGDDVPLSPFCMTNVGEWDKFRNIDMDKQDGMIKALKGPSSK 128

Query: 126 RKTHVDADKTAVMNAWHKIDCRTREAFRRSFLPELIEGYENRIRAFIGNGNDSEVLLLQV 185
           RK HVDADK AV+NAWH+++CRTREA RRSFL E+IEGYE  +RAFI +  D +VL+L V
Sbjct: 129 RKGHVDADKIAVLNAWHRVNCRTREALRRSFLSEVIEGYEECLRAFIKDSGDGDVLVLHV 188

Query: 186 QDPFHRLLLHGVCEFYDLISVTETQSRGSKSVKTTKIQKKKSGPLEIPSLTLSRFLKMSK 245
           QDPF RLLLHGVCEFY+L+SVT TQS+ ++S KTTKI+KKK+G +E+P++TLS FLKMSK
Sbjct: 189 QDPFRRLLLHGVCEFYNLVSVTVTQSKDAESFKTTKIKKKKTGSVELPNITLSHFLKMSK 248

Query: 246 EGIW 250
           EG W
Sbjct: 249 EGFW 252

[Close]

BLAST of Spo04680.1 vs. TAIR (Arabidopsis)
Match: AT1G03250.2 (unknown protein)

HSP 1 Score: 298.9 bits (764), Expect = 2.900e-81
Identity = 152/256 (59.38%), Postives = 192/256 (75.00%), Query Frame = 1

		  
Query: 1   MAAQNIIQNDKDLLLYTSIFGDDEGGTVKSRGALIEKKIEMLEGLASNVGNRRSRRLLND 60
           MAA N+++ D+ LL+         G T  SRG  +EKKIE LE LA  V NRRSRR LND
Sbjct: 1   MAATNVMRRDESLLI-----DPQRGDTSVSRGLSLEKKIEALESLAGQVSNRRSRRWLND 60

Query: 61  RLLMELVPRLNAEEIRGLFAPPPWGEEVPLSSFCMANVGDWDKVRNTDMDKE------AS 120
           R+LMELVPRL+A+EIRGLFAPPPWG++VP S+F + NVG+WDK RN DMDKE      A+
Sbjct: 61  RILMELVPRLDAQEIRGLFAPPPWGDDVPPSAFSLTNVGEWDKFRNIDMDKEELCFFQAN 120

Query: 121 ILESIRQSSQKRKTHVDADKTAVMNAWHKIDCRTREAFRRSFLPELIEGYENRIRAFIGN 180
           I++S+ +SS ++K  VD DK AV+NAW +IDCRTR+A RRSFLPELIEGYE+ I  FI  
Sbjct: 121 IMDSLNRSSVRQKGSVDGDKIAVLNAWRRIDCRTRDALRRSFLPELIEGYESCISHFIEE 180

Query: 181 GNDSEVLLLQVQDPFHRLLLHGVCEFYDLISVTETQSRGSKSVKTTKIQKKKSGPL-EIP 240
           G + +VL L+VQDPFHRLLLHGVCE+++L+S T T+  G  ++KTT I+ KKSG   E P
Sbjct: 181 GGEGDVLELKVQDPFHRLLLHGVCEYHNLVSTTATEQIGRIAMKTTSIKWKKSGDSGEKP 240

Query: 241 SLTLSRFLKMSKEGIW 250
           S++L+ FL+MSKEG W
Sbjct: 241 SISLAHFLRMSKEGAW 251

The following BLAST results are available for this feature:

BLAST of Spo04680.1 vs. NCBI nr
BLAST of Spo04680.1 vs. UniProtKB/TrEMBL
BLAST of Spo04680.1 vs. ExPASy Swiss-Prot
BLAST of Spo04680.1 vs. TAIR (Arabidopsis)

BLAST of Spo04680.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
gi\|902238435\|gb\|KNA25196.1\|	3.2e-138	100.	hypothetical protein SOVF_0086...	[more]
gi\|731346053\|ref\|XP_010684251.1\|	7.6e-116	83.1	PREDICTED: R3H domain-containi...	[more]
gi\|661892450\|emb\|CDP03608.1\|	4.2e-90	64.6	unnamed protein product [Coffe...	[more]
gi\|697170945\|ref\|XP_009594395.1\|	8.0e-89	64.8	PREDICTED: uncharacterized pro...	[more]
gi\|747066299\|ref\|XP_011079829.1\|	1.4e-88	63.0	PREDICTED: R3H domain-containi...	[more]

BLAST of Spo04680.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
A0A0K9S0B6_SPIOL	2.2e-138	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8C1E0_BETVU	5.3e-116	83.1	Uncharacterized protein OS=Bet...	[more]
A0A068U7M1_COFCA	2.9e-90	64.6	Uncharacterized protein OS=Cof...	[more]
A5BM09_VITVI	1.6e-88	64.7	Putative uncharacterized prote...	[more]
D7TPD6_VITVI	2.1e-88	64.7	Putative uncharacterized prote...	[more]

BLAST of Spo04680.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo04680.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
AT1G03250.2	2.9e-81	59.3	unknown protein	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001374	R3H domain	GENE3D	3.30.1370.50		coord: 163..226 score: 3.
IPR001374	R3H domain	PFAM	PF01424	R3H	coord: 161..208 score: 2.
IPR001374	R3H domain	unknown	SSF82708	R3H domain	coord: 140..226 score: 1.35
IPR025952	R3H-associated N-terminal domain	PFAM	PF13902	R3H-assoc	coord: 37..154 score: 9.4
None	No IPR available	PANTHER	PTHR32019	FAMILY NOT NAMED	coord: 29..249 score: 1.7

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding