Spo04709.1 (mRNA)

Overview
NameSpo04709.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionPsbP domain protein
Locationchr4 : 16202862 .. 16205813 (+)
Sequence length1394
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TATTTTGTGTTGACCCGCACCATCTCCGTCCGCCCCGCTTACTTGTCAACCCGACCCGAGTTAATGAAATGTATTCCAAGCAATTCCATCATAAACGAACACCTCTTCTCATACAACTGAAGATAAGAGTCATAAAACCATGGAAGAAAACAGAGGAAAACCAAAGACACAAAAGAGAACAAAGATTTTCAGCCATGGAGTTATTCACAATCCACCTCCCTCTAAACCAACAAATCCCACATTCAAAAACTCACAAAACCCTCCAATCCTCAAAAACCCATCTTCCAGAAACCCCAATTTCAATCACATTATCACCCAATTCTTCAATTACTACAAAAAGAACCCTCAATCTCTCAATTTTTGCCCTCATTGTATCATCTTCTCTCCCATTTACTACTCCCAATGCAATTGCTGATAACACCCCAGAAGAATCAGAATTTCAACTTGAAAGATTCACAGATTCCGAGCAGGGTTTCACTCTTCTTAAACCTTCCTCCTACATTAAGGTACTTTCATCTTATGTTACTTGGATTCTTTATTTTACTTCATGTACCCGAGTTCGATTTTAACATAGTTTTCAATTTTGTATTTCTCAAAGGTGGATAAAGCAGGAGCCACTGTGTTGTTTGAGGAGGAGAATAAAGGAGCAAACAATGTAGGAATAGTGGTGAACCCAGTTCGAATTACAAGCCTCACTGATTTTGGGACTCCTCAATTTGTGGCTGACAAGCTCATTAAAGCTGAAAAACGCAAGGTAGGTTTTTGCCTTTTCTTTTTACTCCCCTTAATATTCTGAGTGGATTTCTTATTGATTTTATAGATGTCTTTATTGATTTGGATTTGTTGATTGAGAAATTTAGTGTTTTAGTTGAGTAATAATCGAAATTTGCTGCAAATGTGAAGGGGGTATGGTTAAATGTTGGTTGAATAGTATCAAATCAATGGTGAATTGATGATAATTGCAAGTTAATTTGATTGAAAGTGTAGAAAACGGCAAGGACTAATGTGTTATTCCTAGATTGTCCAAGTACTTGTATTTGTGTTGGAATTGTTCCATTGGATGATTATGGATGTGGTGATTCGTTCGTTTGGATGTGTTGAATGTTGAAAGGAGTGGCATTTTCTTGATTGTATTTGTGTTGGAATTGTTACATTGGATGATTATGGGTGTGGCGATTCGTTCATTTGGATATTTGTTGAATGTTGAAAAGAGTGGCATTTGTTTGCAAATGGATATGGATTGTGGATTATTTTTGCTTGATTAATTTGAGTTGAATGTTTGATTCTGTCCAAATGTCTGGTTAGTCTTTGAAATTGAAGAACATAAATGGGGCTGCCGTTTCTTTTGAGATACAAAGAAAGGTGTTGGGGTTTTGATTGAAGAGGAAATGTAGTTTGATGAATGAAGGAATGTTTGCTACTAGGTTCAATTGTGACCTAATAGGAGCAAACCCAAAGCAGCTTAAGCTTTCTTTCTCGAATCAGTGGCTAAATGGCACATAATAAGCAAGTGTAGCACACTACTAGAGCTGTATATGATAAACTGAAGCAATCGGGAAAATATACTTTCCTGCTGTTGTGAATTCCTATCCAAATTGCGCTCTTTCAAATCATAAGAGCACGGTTTTTATATCATCGGACATCTTGGACCTTGCTCTACCCTGAATGGGAACTAGCTATATGCCTACCCTTACTGAGTGGTAATTGTTAGTTAATGTTGATCCTAAAAATCCATGATATACGGAAATTGGAGGGCTAGTGCTTAATAACATGATGATAGATGATATCATTATCATCCATAAATCATGATCTATAGCAATTTTAAATGTTTGCAGATTGATTTTTCTCTTGTATTCTACGTGAGCTTTAACATTCTCCTACACATCAAAGAAAGCTTTTCTTTTATATTGTTCGAATTTAACTTTTTGGAGTTAATAGGAAAGCACAAATGATGCTCAAGTGATTGGAGTAGCAGAAAGACCTGGCCTTGATGGGTTACCAGTATATGAGTTTGAATATGTAGTTGATAGCTCAAGAGGAGGAATGAAAAGGATATTCTCTGCTGCATTCGTCTGTAGAAAGAAACTCTACTTGTTAAACATTTCTCATGCCGACAAGCCAGAGAGTCCTCTTGACAACAATACCAGAACTATGCTCGAACAAGTTCTTCATTCCTTCGATGCTGCTCCTTCCACATAAACCTTGCTTGCAGCTTTGCAGGTTGTTAATTGTTGTCTGAATTACATTCTTTTCCCTGTCTATAGCATATCATATGAGAAAACACAATTATGAAATGAAATCTGAGTTTACTTTAGCATTGTTCGGTCCTCTTTTGTGCTGCTGCTGGTTTACATTATTAGCATGTTTGTGTTGATTAAGGAGAAGCATGCATCGCGTTCAGTCTGTCAAACAACATCCTACATTTTGCATATTTTTGACAGTGATCTGATGCAGAGGTTGGAGTAATTGAAATTCTAGTTATTTTACATTTTGCATGTTAAGGATGAATTGGCTGCTGTCGAGGAGAAAGGTTGGGCAACAACAAACGCACCACTTTGAGACTATACTAACATGTTTGGCTGCGAAACTAAGGCTTTGTTTGGTAGAAAGGAATCGAAAGGAAAAGAAGAGAAAGGAATAGAAAAATATGTGTTTTGTTGGATTATTGTGTACTAAGTGATGCAATCAGCTTATTGTAGCTTATTATAGCAGCTGTAATTTGTAACTAACGGTTGCTGACTCATCACCACATCAGCATAACAGATTCACTAGCAATCAGTTACACATTGTAACAACTTTTAGTACATTCTAGAATTATGCTAAGCTATAAATACTACTTGTAATAAGCTTGTGATTATCAATCAATACAATCTCTAAATTCTGTTTTTCTTCCCCAAATCTTATCATGGTATCAGAGCAGGTCTGATTACCTGCGTTCTTTCTGAAAATTCC

mRNA sequence

TATTTTGTGTTGACCCGCACCATCTCCGTCCGCCCCGCTTACTTGTCAACCCGACCCGAGTTAATGAAATGTATTCCAAGCAATTCCATCATAAACGAACACCTCTTCTCATACAACTGAAGATAAGAGTCATAAAACCATGGAAGAAAACAGAGGAAAACCAAAGACACAAAAGAGAACAAAGATTTTCAGCCATGGAGTTATTCACAATCCACCTCCCTCTAAACCAACAAATCCCACATTCAAAAACTCACAAAACCCTCCAATCCTCAAAAACCCATCTTCCAGAAACCCCAATTTCAATCACATTATCACCCAATTCTTCAATTACTACAAAAAGAACCCTCAATCTCTCAATTTTTGCCCTCATTGTATCATCTTCTCTCCCATTTACTACTCCCAATGCAATTGCTGATAACACCCCAGAAGAATCAGAATTTCAACTTGAAAGATTCACAGATTCCGAGCAGGGTTTCACTCTTCTTAAACCTTCCTCCTACATTAAGGTGGATAAAGCAGGAGCCACTGTGTTGTTTGAGGAGGAGAATAAAGGAGCAAACAATGTAGGAATAGTGGTGAACCCAGTTCGAATTACAAGCCTCACTGATTTTGGGACTCCTCAATTTGTGGCTGACAAGCTCATTAAAGCTGAAAAACGCAAGGAAAGCACAAATGATGCTCAAGTGATTGGAGTAGCAGAAAGACCTGGCCTTGATGGGTTACCAGTATATGAGTTTGAATATGTAGTTGATAGCTCAAGAGGAGGAATGAAAAGGATATTCTCTGCTGCATTCGTCTGTAGAAAGAAACTCTACTTGTTAAACATTTCTCATGCCGACAAGCCAGAGAGTCCTCTTGACAACAATACCAGAACTATGCTCGAACAAGTTCTTCATTCCTTCGATGCTGCTCCTTCCACATAAACCTTGCTTGCAGCTTTGCAGGATGAATTGGCTGCTGTCGAGGAGAAAGGTTGGGCAACAACAAACGCACCACTTTGAGACTATACTAACATGTTTGGCTGCGAAACTAAGGCTTTGTTTGGTAGAAAGGAATCGAAAGGAAAAGAAGAGAAAGGAATAGAAAAATATGTGTTTTGTTGGATTATTGTGTACTAAGTGATGCAATCAGCTTATTGTAGCTTATTATAGCAGCTGTAATTTGTAACTAACGGTTGCTGACTCATCACCACATCAGCATAACAGATTCACTAGCAATCAGTTACACATTGTAACAACTTTTAGTACATTCTAGAATTATGCTAAGCTATAAATACTACTTGTAATAAGCTTGTGATTATCAATCAATACAATCTCTAAATTCTGTTTTTCTTCCCCAAATCTTATCATGGTATCAGAGCAGGTCTGATTACCTGCGTTCTTTCTGAAAATTCC

Coding sequence (CDS)

ATGTATTCCAAGCAATTCCATCATAAACGAACACCTCTTCTCATACAACTGAAGATAAGAGTCATAAAACCATGGAAGAAAACAGAGGAAAACCAAAGACACAAAAGAGAACAAAGATTTTCAGCCATGGAGTTATTCACAATCCACCTCCCTCTAAACCAACAAATCCCACATTCAAAAACTCACAAAACCCTCCAATCCTCAAAAACCCATCTTCCAGAAACCCCAATTTCAATCACATTATCACCCAATTCTTCAATTACTACAAAAAGAACCCTCAATCTCTCAATTTTTGCCCTCATTGTATCATCTTCTCTCCCATTTACTACTCCCAATGCAATTGCTGATAACACCCCAGAAGAATCAGAATTTCAACTTGAAAGATTCACAGATTCCGAGCAGGGTTTCACTCTTCTTAAACCTTCCTCCTACATTAAGGTGGATAAAGCAGGAGCCACTGTGTTGTTTGAGGAGGAGAATAAAGGAGCAAACAATGTAGGAATAGTGGTGAACCCAGTTCGAATTACAAGCCTCACTGATTTTGGGACTCCTCAATTTGTGGCTGACAAGCTCATTAAAGCTGAAAAACGCAAGGAAAGCACAAATGATGCTCAAGTGATTGGAGTAGCAGAAAGACCTGGCCTTGATGGGTTACCAGTATATGAGTTTGAATATGTAGTTGATAGCTCAAGAGGAGGAATGAAAAGGATATTCTCTGCTGCATTCGTCTGTAGAAAGAAACTCTACTTGTTAAACATTTCTCATGCCGACAAGCCAGAGAGTCCTCTTGACAACAATACCAGAACTATGCTCGAACAAGTTCTTCATTCCTTCGATGCTGCTCCTTCCACATAA

Protein sequence

MYSKQFHHKRTPLLIQLKIRVIKPWKKTEENQRHKREQRFSAMELFTIHLPLNQQIPHSKTHKTLQSSKTHLPETPISITLSPNSSITTKRTLNLSIFALIVSSSLPFTTPNAIADNTPEESEFQLERFTDSEQGFTLLKPSSYIKVDKAGATVLFEEENKGANNVGIVVNPVRITSLTDFGTPQFVADKLIKAEKRKESTNDAQVIGVAERPGLDGLPVYEFEYVVDSSRGGMKRIFSAAFVCRKKLYLLNISHADKPESPLDNNTRTMLEQVLHSFDAAPST
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo04709Spo04709gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo04709.1Spo04709.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo04709.1.exon.1Spo04709.1.exon.1exon
Spo04709.1.exon.2Spo04709.1.exon.2exon
Spo04709.1.exon.3Spo04709.1.exon.3exon
Spo04709.1.exon.4Spo04709.1.exon.4exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo04709.1.utr5p.1Spo04709.1.utr5p.1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo04709.1.CDS.1Spo04709.1.CDS.1CDS
Spo04709.1.CDS.2Spo04709.1.CDS.2CDS
Spo04709.1.CDS.3Spo04709.1.CDS.3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo04709.1.utr3p.1Spo04709.1.utr3p.1three_prime_UTR
Spo04709.1.utr3p.2Spo04709.1.utr3p.2three_prime_UTR


Homology
[Close]
BLAST of Spo04709.1 vs. NCBI nr
Match: gi|902188627|gb|KNA11205.1| (hypothetical protein SOVF_137350 [Spinacia oleracea])

HSP 1 Score: 473.0 bits (1216), Expect = 3.600e-130
Identity = 242/242 (100.00%), Postives = 242/242 (100.00%), Query Frame = 1 

		  

Query: 43  MELFTIHLPLNQQIPHSKTHKTLQSSKTHLPETPISITLSPNSSITTKRTLNLSIFALIV 102
           MELFTIHLPLNQQIPHSKTHKTLQSSKTHLPETPISITLSPNSSITTKRTLNLSIFALIV
Sbjct: 1   MELFTIHLPLNQQIPHSKTHKTLQSSKTHLPETPISITLSPNSSITTKRTLNLSIFALIV 60

Query: 103 SSSLPFTTPNAIADNTPEESEFQLERFTDSEQGFTLLKPSSYIKVDKAGATVLFEEENKG 162
           SSSLPFTTPNAIADNTPEESEFQLERFTDSEQGFTLLKPSSYIKVDKAGATVLFEEENKG
Sbjct: 61  SSSLPFTTPNAIADNTPEESEFQLERFTDSEQGFTLLKPSSYIKVDKAGATVLFEEENKG 120

Query: 163 ANNVGIVVNPVRITSLTDFGTPQFVADKLIKAEKRKESTNDAQVIGVAERPGLDGLPVYE 222
           ANNVGIVVNPVRITSLTDFGTPQFVADKLIKAEKRKESTNDAQVIGVAERPGLDGLPVYE
Sbjct: 121 ANNVGIVVNPVRITSLTDFGTPQFVADKLIKAEKRKESTNDAQVIGVAERPGLDGLPVYE 180

Query: 223 FEYVVDSSRGGMKRIFSAAFVCRKKLYLLNISHADKPESPLDNNTRTMLEQVLHSFDAAP 282
           FEYVVDSSRGGMKRIFSAAFVCRKKLYLLNISHADKPESPLDNNTRTMLEQVLHSFDAAP
Sbjct: 181 FEYVVDSSRGGMKRIFSAAFVCRKKLYLLNISHADKPESPLDNNTRTMLEQVLHSFDAAP 240

Query: 283 ST 285
           ST
Sbjct: 241 ST 242
[Close]
BLAST of Spo04709.1 vs. NCBI nr
Match: gi|731327218|ref|XP_010674410.1| (PREDICTED: psbP domain-containing protein 2, chloroplastic [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 372.5 bits (955), Expect = 6.700e-100
Identity = 203/277 (73.29%), Postives = 227/277 (81.95%), Query Frame = 1 

		  

Query: 13  LLIQLKIRVIKPWKKTEENQRHKREQRFSAMELFTIHLP-LNQQIPHSKTHKTLQSSKTH 72
           + +QLKIR   PWKKT E Q  K +Q+   MEL  I L  LNQQ P SKTHKTLQSS TH
Sbjct: 1   MALQLKIR---PWKKTGERQTQK-DQKKLIMELSRIRLSSLNQQFPSSKTHKTLQSSNTH 60

Query: 73  LPETPIS----ITLSPNSSITTKRTLNLSIFALIVSSSLPFTTPNAIADNTPEESEFQLE 132
           LP  PIS    IT S NSSIT +RTLNLSI AL+ SSSLP T PNA AD   EE E +L+
Sbjct: 61  LPTIPISHQILITFSSNSSITKRRTLNLSILALLFSSSLPITIPNATAD---EERETELQ 120

Query: 133 RFTDSEQGFTLLKPSSYIKVDKAGATVLFEEENKGANNVGIVVNPVRITSLTDFGTPQFV 192
           R+TDS++GFTLL+PSSYI+VDKAGATVLFEEENKG+NNVGIVVNPVR+ SL DFGTPQFV
Sbjct: 121 RYTDSKEGFTLLRPSSYIQVDKAGATVLFEEENKGSNNVGIVVNPVRLNSLRDFGTPQFV 180

Query: 193 ADKLIKAEKRKESTNDAQVIGVAERPGLDGLPVYEFEYVVDSSRGGMKRIFSAAFVCRKK 252
           ADKLI+AEKRKEST DAQVIG AERPGL+ +PVYEFEY+VDS+RGGMKRIFSAAFV  KK
Sbjct: 181 ADKLIQAEKRKESTKDAQVIGAAERPGLNNIPVYEFEYIVDSTRGGMKRIFSAAFVSGKK 240

Query: 253 LYLLNISHADKPESPLDNNTRTMLEQVLHSFDAAPST 285
           LYLLNISH D+P+SPLD+NTR  LE+VLHSFDAAP T
Sbjct: 241 LYLLNISHIDRPDSPLDSNTRVTLEEVLHSFDAAPLT 270
[Close]
BLAST of Spo04709.1 vs. NCBI nr
Match: gi|296082589|emb|CBI21594.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 272.3 bits (695), Expect = 9.400e-70
Identity = 143/202 (70.79%), Postives = 167/202 (82.67%), Query Frame = 1 

		  

Query: 83  PNSSITTKRTLNLSIFALIVSSSLPFTTPNAIADNTPEESEFQLERFTDSEQGFTLLKPS 142
           P     +KR LNLSI +L+++++LP T    +A    E  EFQ  R+TDS +GFTLL PS
Sbjct: 38  PLECCLSKRDLNLSIVSLLLAAALPNTVFKVVAQ---ELEEFQ--RYTDSVEGFTLLIPS 97

Query: 143 SYIKVDKAGATVLFEEENKGANNVGIVVNPVRITSLTDFGTPQFVADKLIKAEKRKESTN 202
           S+IKVDK GATVLFEEENKG NNVG+VV+PVR+ SL  FG+PQFVADK+I+AEKRKEST 
Sbjct: 98  SWIKVDKGGATVLFEEENKGVNNVGVVVSPVRLESLKQFGSPQFVADKVIQAEKRKESTK 157

Query: 203 DAQVIGVAERPGLDGLPVYEFEYVVDSSRGGMKRIFSAAFVCRKKLYLLNISHADKPESP 262
           DA++IGVAER G  GL VYEFEY+VDS+RGGMKRIFSAAFV  KKLYLLNI+H DKPESP
Sbjct: 158 DAELIGVAERSGQGGLQVYEFEYIVDSTRGGMKRIFSAAFVNSKKLYLLNIAHIDKPESP 217

Query: 263 LDNNTRTMLEQVLHSFDAAPST 285
           LD++TRTMLEQVLHSFDAAPST
Sbjct: 218 LDSHTRTMLEQVLHSFDAAPST 234
[Close]
BLAST of Spo04709.1 vs. NCBI nr
Match: gi|731397567|ref|XP_002274735.2| (PREDICTED: psbP domain-containing protein 2, chloroplastic isoform X2 [Vitis vinifera])

HSP 1 Score: 272.3 bits (695), Expect = 9.400e-70
Identity = 143/202 (70.79%), Postives = 167/202 (82.67%), Query Frame = 1 

		  

Query: 83  PNSSITTKRTLNLSIFALIVSSSLPFTTPNAIADNTPEESEFQLERFTDSEQGFTLLKPS 142
           P     +KR LNLSI +L+++++LP T    +A    E  EFQ  R+TDS +GFTLL PS
Sbjct: 44  PLECCLSKRDLNLSIVSLLLAAALPNTVFKVVAQ---ELEEFQ--RYTDSVEGFTLLIPS 103

Query: 143 SYIKVDKAGATVLFEEENKGANNVGIVVNPVRITSLTDFGTPQFVADKLIKAEKRKESTN 202
           S+IKVDK GATVLFEEENKG NNVG+VV+PVR+ SL  FG+PQFVADK+I+AEKRKEST 
Sbjct: 104 SWIKVDKGGATVLFEEENKGVNNVGVVVSPVRLESLKQFGSPQFVADKVIQAEKRKESTK 163

Query: 203 DAQVIGVAERPGLDGLPVYEFEYVVDSSRGGMKRIFSAAFVCRKKLYLLNISHADKPESP 262
           DA++IGVAER G  GL VYEFEY+VDS+RGGMKRIFSAAFV  KKLYLLNI+H DKPESP
Sbjct: 164 DAELIGVAERSGQGGLQVYEFEYIVDSTRGGMKRIFSAAFVNSKKLYLLNIAHIDKPESP 223

Query: 263 LDNNTRTMLEQVLHSFDAAPST 285
           LD++TRTMLEQVLHSFDAAPST
Sbjct: 224 LDSHTRTMLEQVLHSFDAAPST 240
[Close]
BLAST of Spo04709.1 vs. NCBI nr
Match: gi|659121879|ref|XP_008460858.1| (PREDICTED: psbP domain-containing protein 2, chloroplastic isoform X2 [Cucumis melo])

HSP 1 Score: 270.8 bits (691), Expect = 2.700e-69
Identity = 139/205 (67.80%), Postives = 168/205 (81.95%), Query Frame = 1 

		  

Query: 81  LSPNSSIT-TKRTLNLSIFALIVSSSLPFTTPNAIADNTPEESEFQLERFTDSEQGFTLL 140
           LS NS +  ++R LN+S+ ++ +    P  +    A+      +F+LER+TDS++GFTLL
Sbjct: 139 LSTNSFLLLSRRALNVSVLSMFLYGFSPSISSAVFAE------DFELERYTDSKEGFTLL 198

Query: 141 KPSSYIKVDKAGATVLFEEENKGANNVGIVVNPVRITSLTDFGTPQFVADKLIKAEKRKE 200
           +PSS++KVDKAGATVLFEE NKG+NNVG+VVNPVR+TSL +FGTPQFVADKLI+AEKRKE
Sbjct: 199 RPSSWVKVDKAGATVLFEEGNKGSNNVGVVVNPVRLTSLGEFGTPQFVADKLIQAEKRKE 258

Query: 201 STNDAQVIGVAERPGLDGLPVYEFEYVVDSSRGGMKRIFSAAFVCRKKLYLLNISHADKP 260
           ST DA V+GVAER G  GL VYEFEY VDS+RGGMKRIFSAAFV  KKLY+LNISH+DKP
Sbjct: 259 STKDAAVVGVAERSGEGGLQVYEFEYTVDSTRGGMKRIFSAAFVASKKLYILNISHSDKP 318

Query: 261 ESPLDNNTRTMLEQVLHSFDAAPST 285
           ESPLD+  R MLEQVLHSFDAAPS+
Sbjct: 319 ESPLDSQKRMMLEQVLHSFDAAPSS 337
[Close]
BLAST of Spo04709.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QVC4_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_137350 PE=4 SV=1)

HSP 1 Score: 473.0 bits (1216), Expect = 2.500e-130
Identity = 242/242 (100.00%), Postives = 242/242 (100.00%), Query Frame = 1 

		  

Query: 43  MELFTIHLPLNQQIPHSKTHKTLQSSKTHLPETPISITLSPNSSITTKRTLNLSIFALIV 102
           MELFTIHLPLNQQIPHSKTHKTLQSSKTHLPETPISITLSPNSSITTKRTLNLSIFALIV
Sbjct: 1   MELFTIHLPLNQQIPHSKTHKTLQSSKTHLPETPISITLSPNSSITTKRTLNLSIFALIV 60

Query: 103 SSSLPFTTPNAIADNTPEESEFQLERFTDSEQGFTLLKPSSYIKVDKAGATVLFEEENKG 162
           SSSLPFTTPNAIADNTPEESEFQLERFTDSEQGFTLLKPSSYIKVDKAGATVLFEEENKG
Sbjct: 61  SSSLPFTTPNAIADNTPEESEFQLERFTDSEQGFTLLKPSSYIKVDKAGATVLFEEENKG 120

Query: 163 ANNVGIVVNPVRITSLTDFGTPQFVADKLIKAEKRKESTNDAQVIGVAERPGLDGLPVYE 222
           ANNVGIVVNPVRITSLTDFGTPQFVADKLIKAEKRKESTNDAQVIGVAERPGLDGLPVYE
Sbjct: 121 ANNVGIVVNPVRITSLTDFGTPQFVADKLIKAEKRKESTNDAQVIGVAERPGLDGLPVYE 180

Query: 223 FEYVVDSSRGGMKRIFSAAFVCRKKLYLLNISHADKPESPLDNNTRTMLEQVLHSFDAAP 282
           FEYVVDSSRGGMKRIFSAAFVCRKKLYLLNISHADKPESPLDNNTRTMLEQVLHSFDAAP
Sbjct: 181 FEYVVDSSRGGMKRIFSAAFVCRKKLYLLNISHADKPESPLDNNTRTMLEQVLHSFDAAP 240

Query: 283 ST 285
           ST
Sbjct: 241 ST 242
[Close]
BLAST of Spo04709.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CPV0_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g078670 PE=4 SV=1)

HSP 1 Score: 372.5 bits (955), Expect = 4.700e-100
Identity = 203/277 (73.29%), Postives = 227/277 (81.95%), Query Frame = 1 

		  

Query: 13  LLIQLKIRVIKPWKKTEENQRHKREQRFSAMELFTIHLP-LNQQIPHSKTHKTLQSSKTH 72
           + +QLKIR   PWKKT E Q  K +Q+   MEL  I L  LNQQ P SKTHKTLQSS TH
Sbjct: 1   MALQLKIR---PWKKTGERQTQK-DQKKLIMELSRIRLSSLNQQFPSSKTHKTLQSSNTH 60

Query: 73  LPETPIS----ITLSPNSSITTKRTLNLSIFALIVSSSLPFTTPNAIADNTPEESEFQLE 132
           LP  PIS    IT S NSSIT +RTLNLSI AL+ SSSLP T PNA AD   EE E +L+
Sbjct: 61  LPTIPISHQILITFSSNSSITKRRTLNLSILALLFSSSLPITIPNATAD---EERETELQ 120

Query: 133 RFTDSEQGFTLLKPSSYIKVDKAGATVLFEEENKGANNVGIVVNPVRITSLTDFGTPQFV 192
           R+TDS++GFTLL+PSSYI+VDKAGATVLFEEENKG+NNVGIVVNPVR+ SL DFGTPQFV
Sbjct: 121 RYTDSKEGFTLLRPSSYIQVDKAGATVLFEEENKGSNNVGIVVNPVRLNSLRDFGTPQFV 180

Query: 193 ADKLIKAEKRKESTNDAQVIGVAERPGLDGLPVYEFEYVVDSSRGGMKRIFSAAFVCRKK 252
           ADKLI+AEKRKEST DAQVIG AERPGL+ +PVYEFEY+VDS+RGGMKRIFSAAFV  KK
Sbjct: 181 ADKLIQAEKRKESTKDAQVIGAAERPGLNNIPVYEFEYIVDSTRGGMKRIFSAAFVSGKK 240

Query: 253 LYLLNISHADKPESPLDNNTRTMLEQVLHSFDAAPST 285
           LYLLNISH D+P+SPLD+NTR  LE+VLHSFDAAP T
Sbjct: 241 LYLLNISHIDRPDSPLDSNTRVTLEEVLHSFDAAPLT 270
[Close]
BLAST of Spo04709.1 vs. UniProtKB/TrEMBL
Match: A0A0F7GZ90_9ROSI (PsbP domain-OEC23 like protein (Fragment) OS=Pelargonium myrrhifolium GN=PPD2 PE=2 SV=1)

HSP 1 Score: 273.9 bits (699), Expect = 2.300e-70
Identity = 152/225 (67.56%), Postives = 174/225 (77.33%), Query Frame = 1 

		  

Query: 63  KTLQSSKTH--LPETPISITLSPNSSIT-TKRTLNLSIFALIVSSSLPFTTPNAIADNTP 122
           K   SS TH   PE        PN SI  +KR+LNLSI AL  +  LP  +  A A+   
Sbjct: 9   KAPSSSSTHNRYPEKSNGRYEEPNLSICLSKRSLNLSILALFFNGFLPNLSKYAYAE--- 68

Query: 123 EESEFQLERFTDSEQGFTLLKPSSYIKVDKAGATVLFEEENKGANNVGIVVNPVRITSLT 182
              E +L+R+TDS++GFTLL PSS+ KV+KAGATVLFEEE KG+NNVG+VVNPVR++SL 
Sbjct: 69  ---ELELQRYTDSKEGFTLLIPSSFNKVEKAGATVLFEEEGKGSNNVGVVVNPVRLSSLG 128

Query: 183 DFGTPQFVADKLIKAEKRKESTNDAQVIGVAERPGLDGLPVYEFEYVVDSSRGGMKRIFS 242
           DFGTP+FV DKLI+AEKRKEST DA+VIGVAER G  GL VYEFEY VDS+RGGMKRIFS
Sbjct: 129 DFGTPEFVVDKLIQAEKRKESTVDAEVIGVAERSGQGGLQVYEFEYKVDSTRGGMKRIFS 188

Query: 243 AAFVCRKKLYLLNISHADKPESPLDNNTRTMLEQVLHSFDAAPST 285
           AAFV  KKLYLLNI+H+DKPESPLD  TRTMLEQVLHSFDAAP T
Sbjct: 189 AAFVASKKLYLLNIAHSDKPESPLDAQTRTMLEQVLHSFDAAPQT 227
[Close]
BLAST of Spo04709.1 vs. UniProtKB/TrEMBL
Match: A0A0F7GXL6_9ROSI (PsbP domain-OEC23 like protein (Fragment) OS=Pelargonium transvaalense GN=PPD2 PE=2 SV=1)

HSP 1 Score: 273.5 bits (698), Expect = 2.900e-70
Identity = 153/252 (60.71%), Postives = 183/252 (72.62%), Query Frame = 1 

		  

Query: 34  HKREQRFSAMELFTIHLPLNQQIPHSKTHKTLQSSKTHLPETPISITLSPNSSIT-TKRT 93
           HK++ +            L+  IP  K   +  S++   PE        PN SI  +KR+
Sbjct: 6   HKQQNQTHNQNFIFPKSLLSPSIP--KAPSSSSSTQNGYPEKSNDRNEEPNLSIRLSKRS 65

Query: 94  LNLSIFALIVSSSLPFTTPNAIADNTPEESEFQLERFTDSEQGFTLLKPSSYIKVDKAGA 153
            NLSIFAL  +  LP  +  A A+      E +L+R+TDS++GFTLL PSS+ KV+KAGA
Sbjct: 66  FNLSIFALFFNGFLPNLSKRAYAE------EMELQRYTDSKEGFTLLIPSSFNKVEKAGA 125

Query: 154 TVLFEEENKGANNVGIVVNPVRITSLTDFGTPQFVADKLIKAEKRKESTNDAQVIGVAER 213
           TVLFEEE KG+NNVG+VVNPVR++SL +FGTP+FV DKLI+AEKRKEST DA+VIGVAER
Sbjct: 126 TVLFEEEGKGSNNVGVVVNPVRLSSLGEFGTPEFVVDKLIQAEKRKESTVDAEVIGVAER 185

Query: 214 PGLDGLPVYEFEYVVDSSRGGMKRIFSAAFVCRKKLYLLNISHADKPESPLDNNTRTMLE 273
            G  GL VYEFEY VDS+RGGMKRIFSAAFV  KKLYLLNI+H+DKPESPLD  TRTMLE
Sbjct: 186 SGQGGLQVYEFEYKVDSTRGGMKRIFSAAFVASKKLYLLNIAHSDKPESPLDAQTRTMLE 245

Query: 274 QVLHSFDAAPST 285
           QVLHSFDAAP T
Sbjct: 246 QVLHSFDAAPQT 249
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BLAST of Spo04709.1 vs. UniProtKB/TrEMBL
Match: A0A0F7GYN9_9ROSI (PsbP domain-OEC23 like protein (Fragment) OS=Pelargonium incrassatum GN=PPD2 PE=2 SV=1)

HSP 1 Score: 273.1 bits (697), Expect = 3.900e-70
Identity = 148/219 (67.58%), Postives = 173/219 (79.00%), Query Frame = 1 

		  

Query: 67  SSKTHLPETPISITLSPNSSIT-TKRTLNLSIFALIVSSSLPFTTPNAIADNTPEESEFQ 126
           S++   PE    I    N SI+ +KR+LNLSIFAL  +  LP  +  A A+      E +
Sbjct: 7   STQKRYPEKTKDIYEELNLSISFSKRSLNLSIFALFFNGFLPNPSKCAYAE------ELE 66

Query: 127 LERFTDSEQGFTLLKPSSYIKVDKAGATVLFEEENKGANNVGIVVNPVRITSLTDFGTPQ 186
           LER+TDSE+GFTLL PSS+ KV+KAGATVLFEEE KG+NNVG+VVNPVR++SL +FGTP+
Sbjct: 67  LERYTDSEEGFTLLIPSSFNKVEKAGATVLFEEEGKGSNNVGVVVNPVRLSSLGEFGTPE 126

Query: 187 FVADKLIKAEKRKESTNDAQVIGVAERPGLDGLPVYEFEYVVDSSRGGMKRIFSAAFVCR 246
           FV +KLI+AEKRKEST DA+VIGVAER G  GL VYEFEY VDS+RGGMKRIFSAAFV  
Sbjct: 127 FVVEKLIQAEKRKESTKDAEVIGVAERSGQGGLQVYEFEYKVDSTRGGMKRIFSAAFVAS 186

Query: 247 KKLYLLNISHADKPESPLDNNTRTMLEQVLHSFDAAPST 285
           KKLYLLNI+H+DKPESPLD  TR MLEQVLHSFDAAP T
Sbjct: 187 KKLYLLNIAHSDKPESPLDTQTRMMLEQVLHSFDAAPQT 219
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BLAST of Spo04709.1 vs. ExPASy Swiss-Prot
Match: PPD2_ARATH (PsbP domain-containing protein 2, chloroplastic OS=Arabidopsis thaliana GN=PPD2 PE=1 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 2.700e-61
Identity = 136/240 (56.67%), Postives = 164/240 (68.33%), Query Frame = 1 

		  

Query: 45  LFTIHLPLNQQIPHSKTHKTLQSSKTHLPETPISITLSPNSSITTKRTLNLSIFALIVSS 104
           LF+  LP      H K HK    ++   P + +SI LS       KR LNLSI  L  + 
Sbjct: 15  LFSSSLP---PFSHHKIHKFFCFAQN--PSSTVSINLS-------KRHLNLSILTLFFNG 74

Query: 105 SLPFTTPNAIADNTPEESEFQLERFTDSEQGFTLLKPSSYIKVDKAGATVLFEEENKGAN 164
            L         DN  +  E +L+R+TDS  GFTLL PSSY KV+KAGA  LFEE N G+N
Sbjct: 75  FL--------LDNKAKSME-ELQRYTDSNNGFTLLIPSSYTKVEKAGANALFEELNNGSN 134

Query: 165 NVGIVVNPVRITSLTDFGTPQFVADKLIKAEKRKESTNDAQVIGVAERPGLDGLPVYEFE 224
           N+G+VV+PVRI SL  FG+PQFVADKLI AEKRKEST +A+V+ V ER GL G  VYEFE
Sbjct: 135 NIGVVVSPVRIKSLDQFGSPQFVADKLINAEKRKESTKEAEVVSVGERAGL-GQQVYEFE 194

Query: 225 YVVDSSRGGMKRIFSAAFVCRKKLYLLNISHADKPESPLDNNTRTMLEQVLHSFDAAPST 284
           Y +DS+RGG+KR+FSAAFV   KLYLLN+ H+DKPE+PLD++TR  LEQVLHSFDA P T
Sbjct: 195 YKIDSTRGGIKRVFSAAFVSSNKLYLLNVVHSDKPENPLDSSTRMSLEQVLHSFDALPLT 232
[Close]
BLAST of Spo04709.1 vs. TAIR (Arabidopsis)
Match: AT2G28605.1 (Photosystem II reaction center PsbP family protein)

HSP 1 Score: 236.9 bits (603), Expect = 1.500e-62
Identity = 136/240 (56.67%), Postives = 164/240 (68.33%), Query Frame = 1 

		  

Query: 45  LFTIHLPLNQQIPHSKTHKTLQSSKTHLPETPISITLSPNSSITTKRTLNLSIFALIVSS 104
           LF+  LP      H K HK    ++   P + +SI LS       KR LNLSI  L  + 
Sbjct: 15  LFSSSLP---PFSHHKIHKFFCFAQN--PSSTVSINLS-------KRHLNLSILTLFFNG 74

Query: 105 SLPFTTPNAIADNTPEESEFQLERFTDSEQGFTLLKPSSYIKVDKAGATVLFEEENKGAN 164
            L         DN  +  E +L+R+TDS  GFTLL PSSY KV+KAGA  LFEE N G+N
Sbjct: 75  FL--------LDNKAKSME-ELQRYTDSNNGFTLLIPSSYTKVEKAGANALFEELNNGSN 134

Query: 165 NVGIVVNPVRITSLTDFGTPQFVADKLIKAEKRKESTNDAQVIGVAERPGLDGLPVYEFE 224
           N+G+VV+PVRI SL  FG+PQFVADKLI AEKRKEST +A+V+ V ER GL G  VYEFE
Sbjct: 135 NIGVVVSPVRIKSLDQFGSPQFVADKLINAEKRKESTKEAEVVSVGERAGL-GQQVYEFE 194

Query: 225 YVVDSSRGGMKRIFSAAFVCRKKLYLLNISHADKPESPLDNNTRTMLEQVLHSFDAAPST 284
           Y +DS+RGG+KR+FSAAFV   KLYLLN+ H+DKPE+PLD++TR  LEQVLHSFDA P T
Sbjct: 195 YKIDSTRGGIKRVFSAAFVSSNKLYLLNVVHSDKPENPLDSSTRMSLEQVLHSFDALPLT 232
The following BLAST results are available for this feature:
BLAST of Spo04709.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902188627|gb|KNA11205.1|3.6e-130100.hypothetical protein SOVF_1373... [more]
gi|731327218|ref|XP_010674410.1|6.7e-10073.2PREDICTED: psbP domain-contain... [more]
gi|296082589|emb|CBI21594.3|9.4e-7070.7unnamed protein product [Vitis... [more]
gi|731397567|ref|XP_002274735.2|9.4e-7070.7PREDICTED: psbP domain-contain... [more]
gi|659121879|ref|XP_008460858.1|2.7e-6967.8PREDICTED: psbP domain-contain... [more]
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BLAST of Spo04709.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9QVC4_SPIOL2.5e-130100.Uncharacterized protein OS=Spi... [more]
A0A0J8CPV0_BETVU4.7e-10073.2Uncharacterized protein OS=Bet... [more]
A0A0F7GZ90_9ROSI2.3e-7067.5PsbP domain-OEC23 like protein... [more]
A0A0F7GXL6_9ROSI2.9e-7060.7PsbP domain-OEC23 like protein... [more]
A0A0F7GYN9_9ROSI3.9e-7067.5PsbP domain-OEC23 like protein... [more]
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BLAST of Spo04709.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PPD2_ARATH2.7e-6156.6PsbP domain-containing protein... [more]
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BLAST of Spo04709.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1
Match NameE-valueIdentityDescription
AT2G28605.11.5e-6256.6Photosystem II reaction center... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002683PsbP familyPFAMPF01789PsbPcoord: 122..279
score: 2.8
IPR016123Mog1/PsbP, alpha/beta/alpha sandwichGENE3D3.40.1000.10coord: 125..279
score: 8.6
IPR016123Mog1/PsbP, alpha/beta/alpha sandwichunknownSSF55724Mog1p/PsbP-likecoord: 127..280
score: 1.57
NoneNo IPR availablePANTHERPTHR31407FAMILY NOT NAMEDcoord: 24..279
score: 3.1
NoneNo IPR availablePANTHERPTHR31407:SF3PSBP DOMAIN-CONTAINING PROTEIN 2, CHLOROPLASTICcoord: 24..279
score: 3.1

GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015979 photosynthesis
biological_process GO:0030154 cell differentiation
biological_process GO:0009965 leaf morphogenesis
biological_process GO:0045893 positive regulation of transcription, DNA-templated
cellular_component GO:0019898 extrinsic component of membrane
cellular_component GO:0009523 photosystem II
cellular_component GO:0009654 photosystem II oxygen evolving complex
cellular_component GO:0009543 chloroplast thylakoid lumen
molecular_function GO:0005509 calcium ion binding