Spo04755.1 (mRNA)

Overview
NameSpo04755.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
Description40S ribosomal protein S30
LocationSpoScf_04248 : 197 .. 2903 (-)
Sequence length808
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCTGAAACAGCCTTAGAATATCAAACCCTACAAACATTTTCCCTTTAAAACCTTACATCAAAGTTCAAAGTTCAAACCCTAAAAACGATAGCCGGCGCAGGAGAGAGAAAAAGCTAACGATCCAACGGTAGCAGCTTAATATCAACAACAGCTATGGGTAAATCTACCAAACTTTCTTCTCCATTCTTCAAAAATTACTTCAAATTTTCCATTTTATTTATCGAAAATTTCGCTTATTTTGATCTTTAATGGCGGATAATTTGATCGTATCAGTTACAATTTTACAGGAAAGGTTCACGGATCTTTGGCGCGTGCCGGTAAGGTGAGAGGTCAAACCCCAAAGGTTGCATCACAAGATAAGAAGAAGAAGCCCCGTGGACGCGCTCACAAGCGTCTGCAGTATAATCGCCGTTTCGTTACCGCCGGTAACCTTTCTCTCTCTTCGTTTTTAAAATATTTTTACTTAGTATGTTGTTTGGGATTAATGATTTATTTGCTGAAGATGAGGGCGATAATCATCCAGCATGCATTCATATATTCAAATCAATTCAATTCAGAAAATAGAACATTCAAACCCACAAAAAGTAAAATTTTGTTAACAATTTCAACGAACAATGATTAAGTTGGGGATAAAATGCAAAATTTCAACCAAAGGTTGCTCCGAAGGGCTTTTTCTTTTTCTTTGATTGGGTTTTGAGGAAAATTGAAGAAACTTGAAATGAAGTGCTTAGCTGATTTGGGTAGGGAAATGAAGAGTTACATTTACGAATTACAGATATAAACATGTGATCTGTAATTATGGAATAGAAACTTGTTGGTTGGGAAATGCCAAAGGTGTCTAATTTGTTTTTGCTGAAGTTAATGTCTGAATGAGTCTATTTTGGGATGGATTTGTTAAGTAGCAGTAGCAGTTGAATGCCAATTTGCAGAGCATGTTCATTAAATTTGGAAAGATGTAAACTTGTATTGAAGGTTGGCTATAGGAAACGTAGGGTGATTCTCCGTGCCTTTCGAACTTTGCTTGTGTTGATTGTGGCCTCGAACAAATCACTACATTTTGATGTTCTCTTCATTATTGTTTACATTTAGCCTCGGGTTACAAATTGTGAAGTGTAATGTGAAAGATGTCACTAGTGTAATTTGGTAGCAGATGTTTGTATTTATGATATTAGTCATAGTCAATCCCGATCGGTTTCTGTCAGTTTTCGTGGAAATAATGCTTTCTAGAGCTAACTTTGGAGTTTGGATTTTGTGTGGGATAAAGGTATGATCACGTGGTTGTAAAAAGCCAATTTGCAGAGCAAGGTCATTGTAATAATTGATGAAACCTTGCATTGAAGGTTGGCAACATAAAATATAGGGTGATTCTCCGTGCCTTTCGAACTCTACTCGTGTTGATTACGGCCTCGAACAAATCACTACATTTTATTTTTTTCGGTTTACTCTTAATTTGTATTCATTACATGTGGTTCGAAATAGCCAATTTGCAGTGCAAGGTCATTGATTTTAGAATAATGCAATCTGTCATTGAAGGTTGACAAAATTAAAATATTGGGTGATTCTCCGTGCCTTTCGAACTACTGATTTTGGTAGTGGCCTTGAACAAATTACTACATTTAGCCTTTAATAAATCACACTATTTATATTTTCTAAGATGCATCTGTTCTTTGTTTGACTTATACTTGTCAAGTGTTCAATATAATTGGAATCATGTCAAAATAAAAACAATGTTCTGCACATTTTTAATACAATTGCATTTTTGGATTGTTTCTAAATCACACTATGTTTAATACAATTGCATTTTTGATTGTTTCTATTCATTATAAGTGGTTGTAAATCTCTCATTTTTTTGGATCAATTGAAAAATTGTATGAAAAAGAAGCTTCATTTGTTGGTTGATCGGAGAATATATATTTCTATTGACTCGTTCCCTTTAACCTATAACAATTTGTGTTTTCTTCTTTGCCTTTTAATATTCCTATGAAGATAATCAAAAGCAGCTAAATTTTAAATTTACTTTACGGTTTATTTTGTTTTGGAAATGGGCATGAAAGTAAAGCAGTGATAAGTCAATTACAGACACATACCTGTAATGATTAGTGGAAATGATCGCAATTCATTGATTTGTCAGAAGATCATTGTTTTGGTTTTGATTATCTTGTTTTGGCTTTGATTATTTTGTATTTGATTTCAGTTGTTGGATTCGGCAAGAAGAGAGGTCCAAACTCATCCGAGAAGTAGAAGTTTAAATAGAAGAATGTGAAGTCATGCAGCAACCTCCTAGCAACACTTCAATTCGTTTTTCGTTTTTATATTAGTCTCTAGTGATGTAATTGGTGTATTCTTAAATGACTTGTTTTGCTATTGAGCCTTAAATTAAACTATGTAGTTTCGAACCTTCTTTTCCTCTTATAGAAACTTTTTTGGTAATCTGATAATTACACTACATCTCACTCTCTGTACAAATGTTTAAATTTGGGTGTACATAATTCCAAGTTTACCTGGCAACCGAAGCGGCTTCTTCTGAATATAAGCCATGAAATGACAAGCAGAATATAAGCCATGTAGTATGTCGAAGTATAATTTAGCTTTTTGTTGGTCCTTGAATCCTTCTAGAGCATGATTATGTCTTGCTTTCATGTGTTTAACTCCTGCTATCATATACTCCTTAATGATATAAATTTCAATTGCCCATAACTCTTAGGGC

mRNA sequence

CCTGAAACAGCCTTAGAATATCAAACCCTACAAACATTTTCCCTTTAAAACCTTACATCAAAGTTCAAAGTTCAAACCCTAAAAACGATAGCCGGCGCAGGAGAGAGAAAAAGCTAACGATCCAACGGTAGCAGCTTAATATCAACAACAGCTATGGGAAAGGTTCACGGATCTTTGGCGCGTGCCGGTAAGGTGAGAGGTCAAACCCCAAAGGTTGCATCACAAGATAAGAAGAAGAAGCCCCGTGGACGCGCTCACAAGCGTCTGCAGTATAATCGCCGTTTCGTTACCGCCGTTGTTGGATTCGGCAAGAAGAGAGGTCCAAACTCATCCGAGAAGTAGAAGTTTAAATAGAAGAATGTGAAGTCATGCAGCAACCTCCTAGCAACACTTCAATTCGTTTTTCGTTTTTATATTAGTCTCTAGTGATGTAATTGGTGTATTCTTAAATGACTTGTTTTGCTATTGAGCCTTAAATTAAACTATGTAGTTTCGAACCTTCTTTTCCTCTTATAGAAACTTTTTTGGTAATCTGATAATTACACTACATCTCACTCTCTGTACAAATGTTTAAATTTGGGTGTACATAATTCCAAGTTTACCTGGCAACCGAAGCGGCTTCTTCTGAATATAAGCCATGAAATGACAAGCAGAATATAAGCCATGTAGTATGTCGAAGTATAATTTAGCTTTTTGTTGGTCCTTGAATCCTTCTAGAGCATGATTATGTCTTGCTTTCATGTGTTTAACTCCTGCTATCATATACTCCTTAATGATATAAATTTCAATTGCCCATAACTCTTAGGGC

Coding sequence (CDS)

ATGGGAAAGGTTCACGGATCTTTGGCGCGTGCCGGTAAGGTGAGAGGTCAAACCCCAAAGGTTGCATCACAAGATAAGAAGAAGAAGCCCCGTGGACGCGCTCACAAGCGTCTGCAGTATAATCGCCGTTTCGTTACCGCCGTTGTTGGATTCGGCAAGAAGAGAGGTCCAAACTCATCCGAGAAGTAG

Protein sequence

MGKVHGSLARAGKVRGQTPKVASQDKKKKPRGRAHKRLQYNRRFVTAVVGFGKKRGPNSSEK
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo04755Spo04755gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo04755.1Spo04755.1-proteinpolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo04755.1.utr5p.1Spo04755.1.utr5p.1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo04755.1.CDS.3Spo04755.1.CDS.3CDS
Spo04755.1.CDS.2Spo04755.1.CDS.2CDS
Spo04755.1.CDS.1Spo04755.1.CDS.1CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo04755.1.utr3p.1Spo04755.1.utr3p.1three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo04755.1.exon.3Spo04755.1.exon.3exon
Spo04755.1.exon.2Spo04755.1.exon.2exon
Spo04755.1.exon.1Spo04755.1.exon.1exon


Homology
[Close]
BLAST of Spo04755.1 vs. NCBI nr
Match: gi|902217953|gb|KNA17922.1| (hypothetical protein SOVF_075460 [Spinacia oleracea])

HSP 1 Score: 123.2 bits (308), Expect = 1.500e-25
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 1 

		  

Query: 1  MGKVHGSLARAGKVRGQTPKVASQDKKKKPRGRAHKRLQYNRRFVTAVVGFGKKRGPNSS 60
          MGKVHGSLARAGKVRGQTPKVASQDKKKKPRGRAHKRLQYNRRFVTAVVGFGKKRGPNSS
Sbjct: 1  MGKVHGSLARAGKVRGQTPKVASQDKKKKPRGRAHKRLQYNRRFVTAVVGFGKKRGPNSS 60

Query: 61 EK 63
          EK
Sbjct: 61 EK 62
[Close]
BLAST of Spo04755.1 vs. NCBI nr
Match: gi|731319968|ref|XP_010670553.1| (PREDICTED: 40S ribosomal protein S30 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 122.5 bits (306), Expect = 2.600e-25
Identity = 61/62 (98.39%), Postives = 62/62 (100.00%), Query Frame = 1 

		  

Query: 1  MGKVHGSLARAGKVRGQTPKVASQDKKKKPRGRAHKRLQYNRRFVTAVVGFGKKRGPNSS 60
          MGKVHGSLARAGKVRGQTPKVASQDKKKKPRGRAHKR+QYNRRFVTAVVGFGKKRGPNSS
Sbjct: 1  MGKVHGSLARAGKVRGQTPKVASQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60

Query: 61 EK 63
          EK
Sbjct: 61 EK 62
[Close]
BLAST of Spo04755.1 vs. NCBI nr
Match: gi|657967012|ref|XP_008375203.1| (PREDICTED: 40S ribosomal protein S30 [Malus domestica])

HSP 1 Score: 121.7 bits (304), Expect = 4.500e-25
Identity = 61/62 (98.39%), Postives = 61/62 (98.39%), Query Frame = 1 

		  

Query: 1  MGKVHGSLARAGKVRGQTPKVASQDKKKKPRGRAHKRLQYNRRFVTAVVGFGKKRGPNSS 60
          MGKVHGSLARAGKVRGQTPKVA QDKKKKPRGRAHKRLQYNRRFVTAVVGFGKKRGPNSS
Sbjct: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRLQYNRRFVTAVVGFGKKRGPNSS 60

Query: 61 EK 63
          EK
Sbjct: 61 EK 62
[Close]
BLAST of Spo04755.1 vs. NCBI nr
Match: gi|944267741|gb|KQL31981.1| (hypothetical protein SETIT_019362mg, partial [Setaria italica])

HSP 1 Score: 120.9 bits (302), Expect = 7.700e-25
Identity = 60/62 (96.77%), Postives = 61/62 (98.39%), Query Frame = 1 

		  

Query: 1  MGKVHGSLARAGKVRGQTPKVASQDKKKKPRGRAHKRLQYNRRFVTAVVGFGKKRGPNSS 60
          MGKVHGSLARAGKVRGQTPKVA QDKKKKPRGRAHKR+QYNRRFVTAVVGFGKKRGPNSS
Sbjct: 32 MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 91

Query: 61 EK 63
          EK
Sbjct: 92 EK 93
[Close]
BLAST of Spo04755.1 vs. NCBI nr
Match: gi|641836965|gb|KDO55923.1| (hypothetical protein CISIN_1g042287mg, partial [Citrus sinensis])

HSP 1 Score: 120.9 bits (302), Expect = 7.700e-25
Identity = 60/62 (96.77%), Postives = 61/62 (98.39%), Query Frame = 1 

		  

Query: 1  MGKVHGSLARAGKVRGQTPKVASQDKKKKPRGRAHKRLQYNRRFVTAVVGFGKKRGPNSS 60
          MGKVHGSLARAGKVRGQTPKVA QDKKKKPRGRAHKR+QYNRRFVTAVVGFGKKRGPNSS
Sbjct: 36 MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 95

Query: 61 EK 63
          EK
Sbjct: 96 EK 97
[Close]
BLAST of Spo04755.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RH40_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_067350 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 1.100e-25
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 1 

		  

Query: 1  MGKVHGSLARAGKVRGQTPKVASQDKKKKPRGRAHKRLQYNRRFVTAVVGFGKKRGPNSS 60
          MGKVHGSLARAGKVRGQTPKVASQDKKKKPRGRAHKRLQYNRRFVTAVVGFGKKRGPNSS
Sbjct: 1  MGKVHGSLARAGKVRGQTPKVASQDKKKKPRGRAHKRLQYNRRFVTAVVGFGKKRGPNSS 60

Query: 61 EK 63
          EK
Sbjct: 61 EK 62
[Close]
BLAST of Spo04755.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CY29_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g042070 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 1.800e-25
Identity = 61/62 (98.39%), Postives = 62/62 (100.00%), Query Frame = 1 

		  

Query: 1  MGKVHGSLARAGKVRGQTPKVASQDKKKKPRGRAHKRLQYNRRFVTAVVGFGKKRGPNSS 60
          MGKVHGSLARAGKVRGQTPKVASQDKKKKPRGRAHKR+QYNRRFVTAVVGFGKKRGPNSS
Sbjct: 1  MGKVHGSLARAGKVRGQTPKVASQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60

Query: 61 EK 63
          EK
Sbjct: 61 EK 62
[Close]
BLAST of Spo04755.1 vs. UniProtKB/TrEMBL
Match: A0A0E0CSQ8_9ORYZ (Uncharacterized protein OS=Oryza meridionalis PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 5.300e-25
Identity = 60/62 (96.77%), Postives = 61/62 (98.39%), Query Frame = 1 

		  

Query: 1  MGKVHGSLARAGKVRGQTPKVASQDKKKKPRGRAHKRLQYNRRFVTAVVGFGKKRGPNSS 60
          MGKVHGSLARAGKVRGQTPKVA QDKKKKPRGRAHKR+QYNRRFVTAVVGFGKKRGPNSS
Sbjct: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60

Query: 61 EK 63
          EK
Sbjct: 61 EK 62
[Close]
BLAST of Spo04755.1 vs. UniProtKB/TrEMBL
Match: C6TEP1_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_05G059600 PE=2 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 5.300e-25
Identity = 60/62 (96.77%), Postives = 61/62 (98.39%), Query Frame = 1 

		  

Query: 1  MGKVHGSLARAGKVRGQTPKVASQDKKKKPRGRAHKRLQYNRRFVTAVVGFGKKRGPNSS 60
          MGKVHGSLARAGKVRGQTPKVA QDKKKKPRGRAHKR+QYNRRFVTAVVGFGKKRGPNSS
Sbjct: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60

Query: 61 EK 63
          EK
Sbjct: 61 EK 62
[Close]
BLAST of Spo04755.1 vs. UniProtKB/TrEMBL
Match: A0A0V0GRY5_SOLCH (Putative ovule protein OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 5.300e-25
Identity = 60/62 (96.77%), Postives = 61/62 (98.39%), Query Frame = 1 

		  

Query: 1  MGKVHGSLARAGKVRGQTPKVASQDKKKKPRGRAHKRLQYNRRFVTAVVGFGKKRGPNSS 60
          MGKVHGSLARAGKVRGQTPKVA QDKKKKPRGRAHKR+QYNRRFVTAVVGFGKKRGPNSS
Sbjct: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60

Query: 61 EK 63
          EK
Sbjct: 61 EK 62
[Close]
BLAST of Spo04755.1 vs. ExPASy Swiss-Prot
Match: RS30_ARATH (40S ribosomal protein S30 OS=Arabidopsis thaliana GN=RPS30A PE=3 SV=3)

HSP 1 Score: 119.8 bits (299), Expect = 1.100e-26
Identity = 60/62 (96.77%), Postives = 61/62 (98.39%), Query Frame = 1 

		  

Query: 1  MGKVHGSLARAGKVRGQTPKVASQDKKKKPRGRAHKRLQYNRRFVTAVVGFGKKRGPNSS 60
          MGKVHGSLARAGKVRGQTPKVA QDKKKKPRGRAHKRLQ+NRRFVTAVVGFGKKRGPNSS
Sbjct: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRLQHNRRFVTAVVGFGKKRGPNSS 60

Query: 61 EK 63
          EK
Sbjct: 61 EK 62
[Close]
BLAST of Spo04755.1 vs. ExPASy Swiss-Prot
Match: RS30_RAT (40S ribosomal protein S30 OS=Rattus norvegicus GN=Fau PE=1 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 1.500e-17
Identity = 44/58 (75.86%), Postives = 50/58 (86.21%), Query Frame = 1 

		  

Query: 3  KVHGSLARAGKVRGQTPKVASQDKKKKPRGRAHKRLQYNRRFVTAVVGFGKKRGPNSS 61
          KVHGSLARAGKVRGQTPKVA Q+KKKK  GRA +R+QYNRRFV  V  FGKK+GPN++
Sbjct: 1  KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNAN 58
[Close]
BLAST of Spo04755.1 vs. ExPASy Swiss-Prot
Match: RS30_MUSSI (40S ribosomal protein S30 OS=Mus spicilegus GN=Fau PE=3 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 1.500e-17
Identity = 44/58 (75.86%), Postives = 50/58 (86.21%), Query Frame = 1 

		  

Query: 3  KVHGSLARAGKVRGQTPKVASQDKKKKPRGRAHKRLQYNRRFVTAVVGFGKKRGPNSS 61
          KVHGSLARAGKVRGQTPKVA Q+KKKK  GRA +R+QYNRRFV  V  FGKK+GPN++
Sbjct: 1  KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNAN 58
[Close]
BLAST of Spo04755.1 vs. ExPASy Swiss-Prot
Match: RS30_MOUSE (40S ribosomal protein S30 OS=Mus musculus GN=Fau PE=1 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 1.500e-17
Identity = 44/58 (75.86%), Postives = 50/58 (86.21%), Query Frame = 1 

		  

Query: 3  KVHGSLARAGKVRGQTPKVASQDKKKKPRGRAHKRLQYNRRFVTAVVGFGKKRGPNSS 61
          KVHGSLARAGKVRGQTPKVA Q+KKKK  GRA +R+QYNRRFV  V  FGKK+GPN++
Sbjct: 1  KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNAN 58
[Close]
BLAST of Spo04755.1 vs. ExPASy Swiss-Prot
Match: RS30_HUMAN (40S ribosomal protein S30 OS=Homo sapiens GN=FAU PE=1 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 1.500e-17
Identity = 44/58 (75.86%), Postives = 50/58 (86.21%), Query Frame = 1 

		  

Query: 3  KVHGSLARAGKVRGQTPKVASQDKKKKPRGRAHKRLQYNRRFVTAVVGFGKKRGPNSS 61
          KVHGSLARAGKVRGQTPKVA Q+KKKK  GRA +R+QYNRRFV  V  FGKK+GPN++
Sbjct: 1  KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNAN 58
[Close]
BLAST of Spo04755.1 vs. TAIR (Arabidopsis)
Match: AT2G19750.1 (Ribosomal protein S30 family protein)

HSP 1 Score: 119.8 bits (299), Expect = 6.000e-28
Identity = 60/62 (96.77%), Postives = 61/62 (98.39%), Query Frame = 1 

		  

Query: 1  MGKVHGSLARAGKVRGQTPKVASQDKKKKPRGRAHKRLQYNRRFVTAVVGFGKKRGPNSS 60
          MGKVHGSLARAGKVRGQTPKVA QDKKKKPRGRAHKRLQ+NRRFVTAVVGFGKKRGPNSS
Sbjct: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRLQHNRRFVTAVVGFGKKRGPNSS 60

Query: 61 EK 63
          EK
Sbjct: 61 EK 62
[Close]
BLAST of Spo04755.1 vs. TAIR (Arabidopsis)
Match: AT4G29390.1 (Ribosomal protein S30 family protein)

HSP 1 Score: 119.8 bits (299), Expect = 6.000e-28
Identity = 60/62 (96.77%), Postives = 61/62 (98.39%), Query Frame = 1 

		  

Query: 1  MGKVHGSLARAGKVRGQTPKVASQDKKKKPRGRAHKRLQYNRRFVTAVVGFGKKRGPNSS 60
          MGKVHGSLARAGKVRGQTPKVA QDKKKKPRGRAHKRLQ+NRRFVTAVVGFGKKRGPNSS
Sbjct: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRLQHNRRFVTAVVGFGKKRGPNSS 60

Query: 61 EK 63
          EK
Sbjct: 61 EK 62
[Close]
BLAST of Spo04755.1 vs. TAIR (Arabidopsis)
Match: AT5G56670.1 (Ribosomal protein S30 family protein)

HSP 1 Score: 119.8 bits (299), Expect = 6.000e-28
Identity = 60/62 (96.77%), Postives = 61/62 (98.39%), Query Frame = 1 

		  

Query: 1  MGKVHGSLARAGKVRGQTPKVASQDKKKKPRGRAHKRLQYNRRFVTAVVGFGKKRGPNSS 60
          MGKVHGSLARAGKVRGQTPKVA QDKKKKPRGRAHKRLQ+NRRFVTAVVGFGKKRGPNSS
Sbjct: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRLQHNRRFVTAVVGFGKKRGPNSS 60

Query: 61 EK 63
          EK
Sbjct: 61 EK 62
The following BLAST results are available for this feature:
BLAST of Spo04755.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902217953|gb|KNA17922.1|1.5e-25100.hypothetical protein SOVF_0754... [more]
gi|731319968|ref|XP_010670553.1|2.6e-2598.3PREDICTED: 40S ribosomal prote... [more]
gi|657967012|ref|XP_008375203.1|4.5e-2598.3PREDICTED: 40S ribosomal prote... [more]
gi|944267741|gb|KQL31981.1|7.7e-2596.7hypothetical protein SETIT_019... [more]
gi|641836965|gb|KDO55923.1|7.7e-2596.7hypothetical protein CISIN_1g0... [more]
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BLAST of Spo04755.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9RH40_SPIOL1.1e-25100.Uncharacterized protein OS=Spi... [more]
A0A0J8CY29_BETVU1.8e-2598.3Uncharacterized protein OS=Bet... [more]
A0A0E0CSQ8_9ORYZ5.3e-2596.7Uncharacterized protein OS=Ory... [more]
C6TEP1_SOYBN5.3e-2596.7Uncharacterized protein OS=Gly... [more]
A0A0V0GRY5_SOLCH5.3e-2596.7Putative ovule protein OS=Sola... [more]
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BLAST of Spo04755.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RS30_ARATH1.1e-2696.740S ribosomal protein S30 OS=A... [more]
RS30_RAT1.5e-1775.840S ribosomal protein S30 OS=R... [more]
RS30_MUSSI1.5e-1775.840S ribosomal protein S30 OS=M... [more]
RS30_MOUSE1.5e-1775.840S ribosomal protein S30 OS=M... [more]
RS30_HUMAN1.5e-1775.840S ribosomal protein S30 OS=H... [more]
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BLAST of Spo04755.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 3
Match NameE-valueIdentityDescription
AT2G19750.16.0e-2896.7Ribosomal protein S30 family p... [more]
AT4G29390.16.0e-2896.7Ribosomal protein S30 family p... [more]
AT5G56670.16.0e-2896.7Ribosomal protein S30 family p... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006846Ribosomal protein S30PFAMPF04758Ribosomal_S30coord: 3..59
score: 3.6
NoneNo IPR availablePANTHERPTHR1265040S RIBOSOMAL PROTEIN S30/UBIQUITIN-LIKE PROTEIN FUBIcoord: 1..61
score: 1.1

GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0001510 RNA methylation
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
cellular_component GO:0022627 cytosolic small ribosomal subunit
cellular_component GO:0005739 mitochondrion
cellular_component GO:0005730 nucleolus
molecular_function GO:0003735 structural constituent of ribosome