Spo04893.1 (mRNA) | SpinachBase

Overview


Name	Spo04893.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	Nuclear transport factor 2B
Location	chr1 : 48170126 .. 48176837 (-)
Sequence length	1112

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACAGCTTACAAGACACGCATTGTTTTATTCCCCCTAACCCGCGTCTCTTTGCCCCCCTTTTATAGTTGGCGTAAATCTGAGGCTACCATCTCAAATTAAAACCACCCACACTCGCAAATTATACTCTCGGTGATCTTCATTTTCTCGCAGAGGAGAGAGAAAATAAGAGAGAGAAAGAGCTTCAATCCAGAAGAAATTAGGGCAGAAAAATGGATCCAGATGCAGTATCCAAGGCATTCGTCGAGCACTACTACTCCACATTTGATGCCAATCGTCCAGGGTTAGCGAACTTGTACCAGGATTCATCGATGTTGACCTTCGAAGGCCAGAAGATTCAAGGCTCTCAAGCTATCACTGCTAAGCTCAACAGCCTTCCTTTTCAGCAGTGTCAACACCATATCTCTACCGTCGATTGTCAGCCTTCCGGTACCGGCGGCATGCTTGTTTTCGTCTCTGGTACTCTCCAACTCGCCGGCGAACAGCACGCTCTCAAATTCAGTCAGGTATCGCTTATTTTTCTATTGTTTTAGGAATTTTTGTGATGAATTGATTGATTTAGGTTTTGTCATTTTGATTGTTTGGTTAATTTTGTTGTTGTGATGCTGAACTGATCGGTTAGGGTTTCCGGATGTATGGAGGATTTAGTGCTTGTTTGTTGAAATGAATTGTTTGTGTTATGTTTGATCTATGTTTTGATGACAATTTTCTGAAATTATTGCTATTGTTGTGGTAACTGGGGGACGAATCGGTGATGATTTTGTAACTTAGGGTTTTGGAAGGGTTTTTATCGTCGCAAACTTGTTTTTGGGTCGTGAATGGAACACTTATGTAGGATTGTGGCTTTGAATACTTGAAATTAATTGATTGGTTGTTGTTGGACTTGGAATGTGGTTGCATTTACTGGAGTGAAAAATTTAGAGGAAAGGGAGGGTAAGTGACTGTAGTAGATGAGATTGATTTCGAAATGTATGTGTTGCTTACTGCCACTGGTTTTTCACATCAGAAACCATTATTCTCTTTTCATCCGGCTTTAGCATTTCGTTGTAAGACTATATTCGGTATGTAGTCTTTCCGCTGCATTTTGAAGAAGTCCTAAGATATTCGAATCAACATATTGGAATAAATTTCATCTTGAAGTAGTAGCTTCCTCTTCACGACTGTATTATGTGCCTAATTTCAAGATATATCATCAAAGACAAAAATAACTTAATCCCTCAGAATATATAAGGCAATCTATGGACTCTAAAAAGAATGGTATGGTTTTCACCTGCTATAAATAGTATACCTTAGTTTGGGAATGTTTTGGATTTGGGTCTTGCTAGTTCAAGTCATATTTTTCTGTTGGGTCAATTTTGTTCATCCCAGCCGAAAAGCGGAGGGATGGAGAGGAAATGTCAAATAAGGGGATACACCGATTTTGTGATTGGAAGTGGAAAAGGGGAAGGAGAGAGATGACATTGGGAAGGAGTAAATGATGTTACGAAATGTCAAATAAGGGGATACACCGATTATGTGATTGGAAGTGGAAAAGGGGAAGGCGAGAGATGACATTGGGAAGGAATAAATGATGTTACTCTATAATGGCTATTACTCAAAATACAAGGTTAAAGATATAGTATTAGCCAAAGCTCAGTTGCTTCCAATATTCCTTTATTACTATGTGCAAAGTGCATTCGCTGCATCCTTAGTACTCACTCTCTACAAATCATGTCTTAGCTTAATTTAATCCCCGATTTTTTTGTAAATTATATGAATAAGACCAATTGCATTATGTTTTATCTAGCTACTTCAAGCATTTCCTTTTATGCTTTTAATCAGGCGCTGTACAATATTCTACCCATGACAGTTCCGTGCTACAATATTTGTTTAAGGGTCATACCATATCCATGGCTGAGTAGTTTCCTGATGATCCCATTTGAGTTTTGGATAAAGAAACTTTTGTTTAATTAGAAATAGCAAACCAAATCTTGTTCGTTGAAAATTTCTTTTCCTTAGGGCATGCTTGAATCGAAGGTAATGCGTTAAGGAGGTATAAAAGTCAAACTAAGAAAAAGTGAGGTGATTAGAGGTGATAATAACTTAATAAGGGGATAAAGTGGTAGTAAAGAGAATAAGCTAGTGTTGGTAAAAGAAAAAGGGAAGGAAGGGGGGAATAGGTACCCTCATTATGGGATTATTGTTACCCACATCCCCATAGCGTAAGTATTACCCTCGTTTCCCCCTTCTCCTCACCACATCACTATCACCCTGCTTGCAACCACCTTAATTTACCTTCATTTTTCTTTTAACAAGGCGGTTTTACTTTTATTACCCCCTAATCCATTAACCCTAGTATAAGCATCCCCTTAGTGTAAAGGAGGAATAACATACTATCAAATGCTTTGGAGCTTGCATGTGAGATTCCGAACTTGCATATATTGAGGAGCAAAAAACCTATTGATCTTCTGGAGATGATGTTTGTTACCAGTATAACATACAGTGTGACTTTTTTGCTCATGGTGTTTATGATATTTTGTGCATTCTCTGCAGTCTATATTAAATTGGGGTGTAAGGAATTAGGCGTACACTTTTTGTCATGATTGGGTTCAGGCGTTCATCTCTGTGTGCATACATCCCAAGATTCCCAATTGATTGATTTAGGTTGTTTGTTTGTTTGTTTGGTTAATTTTGTTGATTGATTATGCTGAATCGTCTGGTTAGGGTTTCCGGATGATGTGGAGAATTTAGGGCTTGTTTGTTGAACTGAATTATTTTAGTTTTGTTTGATCTGTGTTTTGATGATAATTTTCCGAAATTGTTTCGGTAATTGAGCGATGAATCGGGGATGATTTTGGAAATTAGGGTTTCGGAATGGTTTTTATCTCGCGAACTTATTTCGGGGTCTTGAGTGGAACACTTAATGTAGGATTGTGGCTTTGAGTATTTGAAATTAATTGGTTAGTTGTCATTGGAATGTGGTTGCATTCACTGGTGTGAAAAGTTTAGAGGAAGGGGAGGGTAAGTGACCTGTGGTAGATGAGATTGATTCCGAAACCTATGTGTTGCTTACTGCCACTGGTTTTTTTTAACATCAGAACCATAATTGTCTTTTTGTTTGGCTTTAGCATTTCGTTGTTTGGCCGTATTAGGTATGTACTATGTAGTCTTTCCACTGCATTTTGAAGAAGTCCTAAGATATTCGAATCGGGATGTTGAAGTAAATTTCATCTTGAAGTAGTAGCTCTCTCTGCACAACTGTATCATGTGCCGAATTTCAAGATTTATCATTAAGGATAAAAATTACTTGATGCCTCAGAAGTGGGGATATATAATGCAATCTATCGACTATGGTATTTTTTTCACCTGCTATCAATACCATACCTTTGTTTGGGCATGGTTTGGATTTGGGTCTTGTTAGTTCAACTCATGTTTTTCTGTTGGGTCAATTTTGTCCATTCCAGCTGAAAAGGGGATAGATGTAGAGGAAATGTCGAATAAAGAGGAAATGTCAAATAGAGGAAATGTGATTGGAAGTGGAAAGGGGGAAGGCGAGAGATGACATTGGGGAGGAGTAAATAATGTTACTATATCTTTAACCTTGTATTTTGAGTAATGGCCATAGCTCATTTGCTTCCAATATTCCTTAATACTATTTGCAAAGTGCATCCTTAGTATTCACTCTCTACAAAATGTCCTAGCTTAATTTAATCTCCGAAAACTTTTGTGAACTATATGAATAAGACCAATTGCATTACGTTTTTGACTTTTATCTAGCTACTTCAAGCATCCCCTTTTATGCTTTTAATCAGCTACTATACAATAATCTACCCATGACAGTTCCATGCTACAATATTTGTTTAAGGGTCCCCATCTGAGTTCTGGATAAAGAAAATTTTGATGAGTTAGAAATTGCAAACCAAATCTTGTTCATTGAGAATTTCTTTTCCTTAGGGTATGCTTGGATTGAGGTTAATAATGCATTAAGGATACTAAAAGTCAAACTAAGAAAAAAACAAGGTGACAGTGCACATAGGTGATGATAAGGGGATAAAGTGGTGGTAAAGAGAGATAAAGTGGTGGTAAAGAGTACATTCTAGTGTTGGTAAGAAGAAAATAGAAGGAATGGGGGAATATGTACCCTAATTATGGGATTAATTGTTACCCACATCCTCATAGCGTAAGTATTACCCTCATTTGGGGTATCCCCTTCTCCTCACAACACCAATACTTTACCCTGCTTCCAACCACCTCAATTTGCCCTCATTTGGGGATAATAGCTTTTCGCTGCAATTTTGAAGAAGTCCTGTGATATTCGAATCAATTGTTGAATTAAATTTCATCTCGAATTAGTAGCTCCCTCTGTACAACTGTACTGTGTGCTTAATTTCAAGATTTATCATCAAGGATAAAGTTACTTAATCCCTCAGAATATATAAGGCAATCTATTGACTCTAAAAAGAGTGGTATTGTTTCCACCTGCTATCAATAGCATACTTAGTTTGGGCGTGGTTTGGATTTGGGTCTTCCTAGTTCAAGTCATGTTTTTCTGTTGGGTCAATTTTGTCCATTCCAGCCGAAAAGGGGAGGGACGGAGTCACGGAGAGGATATGTCAAATAAGGGGATACACAGGTTATGTGATTGGAAGTGGATAAGGGGAAGGAGAGACGACATTGGGAAGGAGTAAATGATGTTACTATAATGGGTATTACTCGAAATACAAGGTTAAAGATATAGTATTAGCCAAAGCTCATTTGCTTCCAATATTCCTTATTACTATGTGCAAAGTGCATCCGCTGCATCCTTAGTACTCACTCTCTACAAATCATGTCTTAGCTTAATTTAATTCCCGATTTTTTTGTAAATTATATGAATAAGACCAATTGCATTATGTTTTATCTAGCTACTTCAAAGCATTTCCTTTTATGCTTTAATCAGCCACTATACAGTATTCTAACCATGACAGTTCCATGCAACAATATTTGTTTAAGGGTCATATCATATCCATGGTTGAGTAGTTTCTTGATGACCCCATCTGAGTTTTGGATAAGAGATTGTTGTTGAATTAGAAATTGCAAACCACATCTTGTTCATTGAAAATTTCTTTTCTTAGGGCTTGCTTGAATTGAGGGTAATGCATTAAGGGATAATAAAAGTCAAACTAAGAAAAAAGTAAGGTGGTTAGAGGTGATGGTATGGGGATAAAGTGGTGGTAAAGAGAATAAACTAGTGTTGGTAAAAAGAAAATGGAAGGAAGGGGGGAATAGGTACCCTCATTATGGGATTAATTGTTCTTAGGGCATGCTTGAATTAAGGGTAATGCATTAAAGGGGTAGTTAAAGTCAAACTAAGAAAAAGTAAGGTGATGGTAAGGGGATAAAGTGGTGGTAAAGAAATAAACTAGTGTTGTTAAAAAGAGGAAGGGGGAATAGGTACCCTCATTAAGGATTAATTGTTACCCACATCCCCATAGCGTAATTGTTACCCTCGTTTGGGGGTAATAGCTTTCCCCTTCCTTCTCCTCACCATATCACTATCACCCTGCTTGAAACCACCAATTAACCTTCATTTTTCTTTTAATAAGGCAGTTTTACTTTTATTACTCCCTAATCCATTAACCCTAATCTAAGCATCCCCTTAGTGTAAAGGAGGAATAACATACTATCAAATGCTTTGGAGCTTGCATGTGAGATTTCGAACTTGCATATATCCTTGTCGAGGAGCAAAAAAACCTATTTATATTCTGGAGATGATGTTTGTTTTACAGTCAATTGAGGCTTTGCAACAGGAATAACATACAGTGTGACTTTTTTGCTCATGGTGTTTATGATATCTTGTGCATTCTCCGCAGTCCATATTAACTTGGGGCTTAGGGAATTAGGCATACTCTTTTTGTCATGATTCGTTCATCTGTGTGTGCATACATCACAAGATTCCCAACTAGCTTGTCATTGGGAGAATCCTGTATGCAGTATATATAATCCTTTTCCCATTGGTTCTATTTTTTTTCTTTCTTTTTTGGCGGTGTGTTTGAATTGTTCTTATATAGTTAGTTTCTCTCTGGGGTTGCTTAAACCCTGATTTTTTCAGCAATATACTCACTACCATTCATGTTTTTTCTGCTAGATGTTCCATTTGATGCCAACACCACAACAAAGCTTTTACGTTCAGAATGACATATTCCGGTTGAACTATGCTTAAATAAGGTGATGAGGGCCCACTTTGTCAAAAAGGGATGAAGAAATGTGTTCTTTGATTGTCCAGGATTGGTGCTTAGGTGTTATAGTTCCATAGCTCTTTGGATGGAAACTGGAAATATTTTTGGCTGGTCATGTTTGATTATCATTGTGTGATTTTGCTTTTTTACATCTGTCTTTAATGATTTGGATTCTGGCATTTGTATTGGCAGTCTTTGGAATGTTACCCTGAACAGACACCTCCAGTCTTCAAAATTACATATATTCAGAGTTATTCAGGACTCTCAGTTTATTGTTTTCCTCCTGTTATTTTTTATCTGTCTCTATAACACACAATCGTGTGCATGTGCGTATGCTTTTGCATAATTTGAGAAAAAGAGGGGGCTGTTGCATGATTTGCTTCCTGTGCAGGTGGATTGGTATTTAGCAAGCAGAGTGTCTTTTTGTATTCACAAATGATATTAGCATGTAAACTGTTGTTTCACTTTGTTTGTTTCTCACAATTTTAGATGTAGCAAATTTAATTGTTTCTTAGTGG

mRNA sequence

ACAGCTTACAAGACACGCATTGTTTTATTCCCCCTAACCCGCGTCTCTTTGCCCCCCTTTTATAGTTGGCGTAAATCTGAGGCTACCATCTCAAATTAAAACCACCCACACTCGCAAATTATACTCTCGGTGATCTTCATTTTCTCGCAGAGGAGAGAGAAAATAAGAGAGAGAAAGAGCTTCAATCCAGAAGAAATTAGGGCAGAAAAATGGATCCAGATGCAGTATCCAAGGCATTCGTCGAGCACTACTACTCCACATTTGATGCCAATCGTCCAGGGTTAGCGAACTTGTACCAGGATTCATCGATGTTGACCTTCGAAGGCCAGAAGATTCAAGGCTCTCAAGCTATCACTGCTAAGCTCAACAGCCTTCCTTTTCAGCAGTGTCAACACCATATCTCTACCGTCGATTGTCAGCCTTCCGGTACCGGCGGCATGCTTGTTTTCGTCTCTGGTACTCTCCAACTCGCCGGCGAACAGCACGCTCTCAAATTCAGTCAGATGTTCCATTTGATGCCAACACCACAACAAAGCTTTTACGTTCAGAATGACATATTCCGGTTGAACTATGCTTAAATAAGGTGATGAGGGCCCACTTTGTCAAAAAGGGATGAAGAAATGTGTTCTTTGATTGTCCAGGATTGGTGCTTAGGTGTTATAGTTCCATAGCTCTTTGGATGGAAACTGGAAATATTTTTGGCTGGTCATGTTTGATTATCATTGTGTGATTTTGCTTTTTTACATCTGTCTTTAATGATTTGGATTCTGGCATTTGTATTGGCAGTCTTTGGAATGTTACCCTGAACAGACACCTCCAGTCTTCAAAATTACATATATTCAGAGTTATTCAGGACTCTCAGTTTATTGTTTTCCTCCTGTTATTTTTTATCTGTCTCTATAACACACAATCGTGTGCATGTGCGTATGCTTTTGCATAATTTGAGAAAAAGAGGGGGCTGTTGCATGATTTGCTTCCTGTGCAGGTGGATTGGTATTTAGCAAGCAGAGTGTCTTTTTGTATTCACAAATGATATTAGCATGTAAACTGTTGTTTCACTTTGTTTGTTTCTCACAATTTTAGATGTAGCAAATTTAATTGTTTCTTAGTGG

Coding sequence (CDS)

ATGGATCCAGATGCAGTATCCAAGGCATTCGTCGAGCACTACTACTCCACATTTGATGCCAATCGTCCAGGGTTAGCGAACTTGTACCAGGATTCATCGATGTTGACCTTCGAAGGCCAGAAGATTCAAGGCTCTCAAGCTATCACTGCTAAGCTCAACAGCCTTCCTTTTCAGCAGTGTCAACACCATATCTCTACCGTCGATTGTCAGCCTTCCGGTACCGGCGGCATGCTTGTTTTCGTCTCTGGTACTCTCCAACTCGCCGGCGAACAGCACGCTCTCAAATTCAGTCAGATGTTCCATTTGATGCCAACACCACAACAAAGCTTTTACGTTCAGAATGACATATTCCGGTTGAACTATGCTTAA

Protein sequence

MDPDAVSKAFVEHYYSTFDANRPGLANLYQDSSMLTFEGQKIQGSQAITAKLNSLPFQQCQHHISTVDCQPSGTGGMLVFVSGTLQLAGEQHALKFSQMFHLMPTPQQSFYVQNDIFRLNYA

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo04893	Spo04893	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo04893.1	Spo04893.1-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo04893.1.utr5p.1	Spo04893.1.utr5p.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo04893.1.CDS.2	Spo04893.1.CDS.2	CDS
Spo04893.1.CDS.1	Spo04893.1.CDS.1	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo04893.1.utr3p.1	Spo04893.1.utr3p.1	three_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo04893.1.exon.2	Spo04893.1.exon.2	exon
Spo04893.1.exon.1	Spo04893.1.exon.1	exon

Homology

[Close]

BLAST of Spo04893.1 vs. NCBI nr
Match: gi|902165086|gb|KNA07048.1| (hypothetical protein SOVF_175560 [Spinacia oleracea])

HSP 1 Score: 252.3 bits (643), Expect = 4.300e-64
Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 1

		  
Query: 1   MDPDAVSKAFVEHYYSTFDANRPGLANLYQDSSMLTFEGQKIQGSQAITAKLNSLPFQQC 60
           MDPDAVSKAFVEHYYSTFDANRPGLANLYQDSSMLTFEGQKIQGSQAITAKLNSLPFQQC
Sbjct: 1   MDPDAVSKAFVEHYYSTFDANRPGLANLYQDSSMLTFEGQKIQGSQAITAKLNSLPFQQC 60

Query: 61  QHHISTVDCQPSGTGGMLVFVSGTLQLAGEQHALKFSQMFHLMPTPQQSFYVQNDIFRLN 120
           QHHISTVDCQPSGTGGMLVFVSGTLQLAGEQHALKFSQMFHLMPTPQQSFYVQNDIFRLN
Sbjct: 61  QHHISTVDCQPSGTGGMLVFVSGTLQLAGEQHALKFSQMFHLMPTPQQSFYVQNDIFRLN 120

Query: 121 YA 123
           YA
Sbjct: 121 YA 122

[Close]

BLAST of Spo04893.1 vs. NCBI nr
Match: gi|731343134|ref|XP_010682741.1| (PREDICTED: nuclear transport factor 2 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 231.1 bits (588), Expect = 1.000e-57
Identity = 112/122 (91.80%), Postives = 116/122 (95.08%), Query Frame = 1

		  
Query: 1   MDPDAVSKAFVEHYYSTFDANRPGLANLYQDSSMLTFEGQKIQGSQAITAKLNSLPFQQC 60
           MDPDAV+KAFVEHYYSTFDANRPGLANLYQDSSMLTFEGQKIQG+Q ITAKL SLPFQQC
Sbjct: 1   MDPDAVAKAFVEHYYSTFDANRPGLANLYQDSSMLTFEGQKIQGTQNITAKLTSLPFQQC 60

Query: 61  QHHISTVDCQPSGTGGMLVFVSGTLQLAGEQHALKFSQMFHLMPTPQQSFYVQNDIFRLN 120
           QH I+TVDCQPSG+GGMLVFVSG LQLAGEQHALKFSQMFHLMPTPQ SF VQNDIFRLN
Sbjct: 61  QHSITTVDCQPSGSGGMLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFCVQNDIFRLN 120

Query: 121 YA 123
           YA
Sbjct: 121 YA 122

[Close]

BLAST of Spo04893.1 vs. NCBI nr
Match: gi|823215707|ref|XP_012440591.1| (PREDICTED: nuclear transport factor 2-like [Gossypium raimondii])

HSP 1 Score: 228.0 bits (580), Expect = 8.800e-57
Identity = 110/122 (90.16%), Postives = 114/122 (93.44%), Query Frame = 1

		  
Query: 1   MDPDAVSKAFVEHYYSTFDANRPGLANLYQDSSMLTFEGQKIQGSQAITAKLNSLPFQQC 60
           MDPDAV+KAFVEHYY+TFDANR GLANLYQD SMLTFEGQKIQGSQ+I AKL SLPFQQC
Sbjct: 1   MDPDAVAKAFVEHYYTTFDANRAGLANLYQDGSMLTFEGQKIQGSQSIVAKLTSLPFQQC 60

Query: 61  QHHISTVDCQPSGTGGMLVFVSGTLQLAGEQHALKFSQMFHLMPTPQQSFYVQNDIFRLN 120
           QH I+TVDCQPSG GGMLVFVSGTLQLAGEQHALKFSQMFHLMPTPQ SFYV NDIFRLN
Sbjct: 61  QHSITTVDCQPSGAGGMLVFVSGTLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRLN 120

Query: 121 YA 123
           YA
Sbjct: 121 YA 122

[Close]

BLAST of Spo04893.1 vs. NCBI nr
Match: gi|823158571|ref|XP_012479122.1| (PREDICTED: nuclear transport factor 2 isoform X1 [Gossypium raimondii])

HSP 1 Score: 225.3 bits (573), Expect = 5.700e-56
Identity = 108/122 (88.52%), Postives = 115/122 (94.26%), Query Frame = 1

		  
Query: 1   MDPDAVSKAFVEHYYSTFDANRPGLANLYQDSSMLTFEGQKIQGSQAITAKLNSLPFQQC 60
           MDPDAV+KAFVEHYYSTFDANR GLANLYQ+ SMLTFEGQKIQGSQ+I AKL SLPFQQC
Sbjct: 1   MDPDAVAKAFVEHYYSTFDANRAGLANLYQEGSMLTFEGQKIQGSQSIVAKLTSLPFQQC 60

Query: 61  QHHISTVDCQPSGTGGMLVFVSGTLQLAGEQHALKFSQMFHLMPTPQQSFYVQNDIFRLN 120
           +H+I+TVDCQPSG+GGMLVFVSG LQLAGEQHALKFSQMFHLMPTPQ SFYV NDIFRLN
Sbjct: 61  KHNITTVDCQPSGSGGMLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRLN 120

Query: 121 YA 123
           YA
Sbjct: 121 YA 122

[Close]

BLAST of Spo04893.1 vs. NCBI nr
Match: gi|823135135|ref|XP_012467341.1| (PREDICTED: nuclear transport factor 2 [Gossypium raimondii])

HSP 1 Score: 224.2 bits (570), Expect = 1.300e-55
Identity = 107/122 (87.70%), Postives = 115/122 (94.26%), Query Frame = 1

		  
Query: 1   MDPDAVSKAFVEHYYSTFDANRPGLANLYQDSSMLTFEGQKIQGSQAITAKLNSLPFQQC 60
           MDPDAV+KAFV+HYYSTFDANR GLANLYQ+ SMLTFEGQKIQGSQ+I AKL SLPFQQC
Sbjct: 1   MDPDAVAKAFVDHYYSTFDANRAGLANLYQEGSMLTFEGQKIQGSQSIVAKLTSLPFQQC 60

Query: 61  QHHISTVDCQPSGTGGMLVFVSGTLQLAGEQHALKFSQMFHLMPTPQQSFYVQNDIFRLN 120
           +H+I+TVDCQPSG GG+LVFVSGTLQLAGEQHALKFSQMFHLMPTPQ SFYV NDIFRLN
Sbjct: 61  KHNITTVDCQPSGAGGVLVFVSGTLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRLN 120

Query: 121 YA 123
           YA
Sbjct: 121 YA 122

[Close]

BLAST of Spo04893.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QK11_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_175560 PE=4 SV=1)

HSP 1 Score: 252.3 bits (643), Expect = 3.000e-64
Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 1

		  
Query: 1   MDPDAVSKAFVEHYYSTFDANRPGLANLYQDSSMLTFEGQKIQGSQAITAKLNSLPFQQC 60
           MDPDAVSKAFVEHYYSTFDANRPGLANLYQDSSMLTFEGQKIQGSQAITAKLNSLPFQQC
Sbjct: 1   MDPDAVSKAFVEHYYSTFDANRPGLANLYQDSSMLTFEGQKIQGSQAITAKLNSLPFQQC 60

Query: 61  QHHISTVDCQPSGTGGMLVFVSGTLQLAGEQHALKFSQMFHLMPTPQQSFYVQNDIFRLN 120
           QHHISTVDCQPSGTGGMLVFVSGTLQLAGEQHALKFSQMFHLMPTPQQSFYVQNDIFRLN
Sbjct: 61  QHHISTVDCQPSGTGGMLVFVSGTLQLAGEQHALKFSQMFHLMPTPQQSFYVQNDIFRLN 120

Query: 121 YA 123
           YA
Sbjct: 121 YA 122

[Close]

BLAST of Spo04893.1 vs. UniProtKB/TrEMBL
Match: A0A0J8C5C1_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g150590 PE=4 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 7.200e-58
Identity = 112/122 (91.80%), Postives = 116/122 (95.08%), Query Frame = 1

		  
Query: 1   MDPDAVSKAFVEHYYSTFDANRPGLANLYQDSSMLTFEGQKIQGSQAITAKLNSLPFQQC 60
           MDPDAV+KAFVEHYYSTFDANRPGLANLYQDSSMLTFEGQKIQG+Q ITAKL SLPFQQC
Sbjct: 1   MDPDAVAKAFVEHYYSTFDANRPGLANLYQDSSMLTFEGQKIQGTQNITAKLTSLPFQQC 60

Query: 61  QHHISTVDCQPSGTGGMLVFVSGTLQLAGEQHALKFSQMFHLMPTPQQSFYVQNDIFRLN 120
           QH I+TVDCQPSG+GGMLVFVSG LQLAGEQHALKFSQMFHLMPTPQ SF VQNDIFRLN
Sbjct: 61  QHSITTVDCQPSGSGGMLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFCVQNDIFRLN 120

Query: 121 YA 123
           YA
Sbjct: 121 YA 122

[Close]

BLAST of Spo04893.1 vs. UniProtKB/TrEMBL
Match: A0A0D2TVZ9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G332400 PE=4 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 6.100e-57
Identity = 110/122 (90.16%), Postives = 114/122 (93.44%), Query Frame = 1

		  
Query: 1   MDPDAVSKAFVEHYYSTFDANRPGLANLYQDSSMLTFEGQKIQGSQAITAKLNSLPFQQC 60
           MDPDAV+KAFVEHYY+TFDANR GLANLYQD SMLTFEGQKIQGSQ+I AKL SLPFQQC
Sbjct: 1   MDPDAVAKAFVEHYYTTFDANRAGLANLYQDGSMLTFEGQKIQGSQSIVAKLTSLPFQQC 60

Query: 61  QHHISTVDCQPSGTGGMLVFVSGTLQLAGEQHALKFSQMFHLMPTPQQSFYVQNDIFRLN 120
           QH I+TVDCQPSG GGMLVFVSGTLQLAGEQHALKFSQMFHLMPTPQ SFYV NDIFRLN
Sbjct: 61  QHSITTVDCQPSGAGGMLVFVSGTLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRLN 120

Query: 121 YA 123
           YA
Sbjct: 121 YA 122

[Close]

BLAST of Spo04893.1 vs. UniProtKB/TrEMBL
Match: A0A0B0NJD6_GOSAR (Nuclear transport factor 2-like protein OS=Gossypium arboreum GN=F383_05257 PE=4 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 6.100e-57
Identity = 110/122 (90.16%), Postives = 114/122 (93.44%), Query Frame = 1

		  
Query: 1   MDPDAVSKAFVEHYYSTFDANRPGLANLYQDSSMLTFEGQKIQGSQAITAKLNSLPFQQC 60
           MDPDAV+KAFVEHYY+TFDANR GLANLYQD SMLTFEGQKIQGSQ+I AKL SLPFQQC
Sbjct: 1   MDPDAVAKAFVEHYYTTFDANRAGLANLYQDGSMLTFEGQKIQGSQSIVAKLTSLPFQQC 60

Query: 61  QHHISTVDCQPSGTGGMLVFVSGTLQLAGEQHALKFSQMFHLMPTPQQSFYVQNDIFRLN 120
           QH I+TVDCQPSG GGMLVFVSGTLQLAGEQHALKFSQMFHLMPTPQ SFYV NDIFRLN
Sbjct: 61  QHSITTVDCQPSGAGGMLVFVSGTLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRLN 120

Query: 121 YA 123
           YA
Sbjct: 121 YA 122

[Close]

BLAST of Spo04893.1 vs. UniProtKB/TrEMBL
Match: A0A0D2NDZ1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G165500 PE=4 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 4.000e-56
Identity = 108/122 (88.52%), Postives = 115/122 (94.26%), Query Frame = 1

		  
Query: 1   MDPDAVSKAFVEHYYSTFDANRPGLANLYQDSSMLTFEGQKIQGSQAITAKLNSLPFQQC 60
           MDPDAV+KAFVEHYYSTFDANR GLANLYQ+ SMLTFEGQKIQGSQ+I AKL SLPFQQC
Sbjct: 1   MDPDAVAKAFVEHYYSTFDANRAGLANLYQEGSMLTFEGQKIQGSQSIVAKLTSLPFQQC 60

Query: 61  QHHISTVDCQPSGTGGMLVFVSGTLQLAGEQHALKFSQMFHLMPTPQQSFYVQNDIFRLN 120
           +H+I+TVDCQPSG+GGMLVFVSG LQLAGEQHALKFSQMFHLMPTPQ SFYV NDIFRLN
Sbjct: 61  KHNITTVDCQPSGSGGMLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRLN 120

Query: 121 YA 123
           YA
Sbjct: 121 YA 122

[Close]

BLAST of Spo04893.1 vs. ExPASy Swiss-Prot
Match: NTF2_ARATH (Nuclear transport factor 2 OS=Arabidopsis thaliana GN=NTF2 PE=1 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 3.700e-55
Identity = 106/123 (86.18%), Postives = 111/123 (90.24%), Query Frame = 1

		  
Query: 1   MDPDAVSKAFVEHYYSTFDANRPGLANLYQDSSMLTFEGQKIQGSQAITAKLNSLPFQQC 60
           MDPDAVSKAFVEHYYSTFD NR GLA LYQ++SMLTFEGQKIQG Q+I AKL SLPFQQC
Sbjct: 4   MDPDAVSKAFVEHYYSTFDTNRVGLAGLYQEASMLTFEGQKIQGVQSIVAKLTSLPFQQC 63

Query: 61  QHHISTVDCQPSG-TGGMLVFVSGTLQLAGEQHALKFSQMFHLMPTPQQSFYVQNDIFRL 120
           +HHISTVDCQPSG   GMLVFVSG LQLAGE+HALKFSQMFHLMPTPQ SFYV NDIFRL
Sbjct: 64  KHHISTVDCQPSGPASGMLVFVSGNLQLAGEEHALKFSQMFHLMPTPQGSFYVFNDIFRL 123

Query: 121 NYA 123
           NYA
Sbjct: 124 NYA 126

[Close]

BLAST of Spo04893.1 vs. ExPASy Swiss-Prot
Match: NTF2_ORYSJ (Nuclear transport factor 2 OS=Oryza sativa subsp. japonica GN=NTF2 PE=2 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 2.300e-41
Identity = 84/122 (68.85%), Postives = 96/122 (78.69%), Query Frame = 1

		  
Query: 1   MDPDAVSKAFVEHYYSTFDANRPGLANLYQDSSMLTFEGQKIQGSQAITAKLNSLPFQQC 60
           MD DAV+KAFVEHYY TFD NRP L +LYQD SMLTFEGQ+  G+ AI  KL SLPF QC
Sbjct: 1   MDADAVAKAFVEHYYRTFDTNRPALVSLYQDGSMLTFEGQQFLGAAAIAGKLGSLPFAQC 60

Query: 61  QHHISTVDCQPSG-TGGMLVFVSGTLQLAGEQHALKFSQMFHLMPTPQQSFYVQNDIFRL 120
            H I+TVDCQPSG  GGMLVFVSG+L+   ++H LKFSQMF L+P    +FYVQND+FRL
Sbjct: 61  HHDINTVDCQPSGPQGGMLVFVSGSLRTGPDEHPLKFSQMFQLLPA-GGNFYVQNDMFRL 120

Query: 121 NY 122
           NY
Sbjct: 121 NY 121

[Close]

BLAST of Spo04893.1 vs. ExPASy Swiss-Prot
Match: NTF2_ASHGO (Nuclear transport factor 2 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=NTF2 PE=3 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 1.300e-28
Identity = 66/123 (53.66%), Postives = 88/123 (71.54%), Query Frame = 1

		  
Query: 1   MDPDAVSKAFVEHYYSTFDANRPGLANLYQDSSMLTFEGQKIQGSQAITAKLNSLPFQQC 60
           MD  A+++ F E YY+ FD +R  L NLY+D SMLTFE  ++QG++ I  KL SLPFQ+ 
Sbjct: 3   MDFSALAQQFTEFYYNQFDTDRSQLGNLYRDQSMLTFETSQLQGAKDIVEKLVSLPFQKV 62

Query: 61  QHHISTVDCQP-SGTGGMLVFVSGTLQLAGEQHALKFSQMFHLMPTPQQSFYVQNDIFRL 120
           QH I+T+D QP S  G +LV ++G L +  EQ+A +FSQ+FHLMP    S+YV NDIFRL
Sbjct: 63  QHRITTLDAQPASPNGDVLVMITGDLLIDDEQNAQRFSQVFHLMP-EGNSYYVFNDIFRL 122

Query: 121 NYA 123
           NY+
Sbjct: 123 NYS 124

[Close]

BLAST of Spo04893.1 vs. ExPASy Swiss-Prot
Match: NTF2_EMENI (Nuclear transport factor 2 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=ntf2 PE=3 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 1.100e-27
Identity = 63/121 (52.07%), Postives = 82/121 (67.77%), Query Frame = 1

		  
Query: 2   DPDAVSKAFVEHYYSTFDANRPGLANLYQDSSMLTFEGQKIQGSQAITAKLNSLPFQQCQ 61
           D  ++++ FV  YY TFD NR GLA LY+D SMLTFE   IQG   I  KL SLPFQ+ Q
Sbjct: 3   DFQSIAQQFVTFYYQTFDGNRAGLAPLYRDHSMLTFETSAIQGVAGIIEKLTSLPFQKVQ 62

Query: 62  HHISTVDCQPSGT-GGMLVFVSGTLQLAGEQHALKFSQMFHLMPTPQQSFYVQNDIFRLN 121
           H +ST+D QPSG  GG+LV V+G L +  E++ + ++Q F LMP    S++V ND+FRL 
Sbjct: 63  HQVSTLDAQPSGEHGGILVLVTGALLVDEEKNPMNYTQTFQLMPDGAGSYFVLNDVFRLI 122

[Close]

BLAST of Spo04893.1 vs. ExPASy Swiss-Prot
Match: NTF2_SCHPO (Nuclear transport factor 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ntf2 PE=3 SV=2)

HSP 1 Score: 123.2 bits (308), Expect = 1.900e-27
Identity = 62/121 (51.24%), Postives = 90/121 (74.38%), Query Frame = 1

		  
Query: 2   DPDAVSKAFVEHYYSTFDANRPGLANLYQDSSMLTFEGQKIQGSQAITAKLNSLPFQQCQ 61
           D +A++  F + YY TFD++R  L++LY++ SML+FEG ++QG++AI  KL SLPFQ+ Q
Sbjct: 3   DYNALATQFTQFYYQTFDSDRSQLSSLYREESMLSFEGAQLQGTKAIVEKLVSLPFQRVQ 62

Query: 62  HHISTVDCQPSG-TGGMLVFVSGTLQLAGEQHALKFSQMFHLMPTPQQSFYVQNDIFRLN 121
           H IST+D QP+G TG ++V V+G L L  EQ A ++SQ+FHL+     ++YV ND+FRLN
Sbjct: 63  HRISTLDAQPTGTTGSVIVMVTGELLLDEEQMAQRYSQVFHLV-NNNGNYYVLNDLFRLN 122

[Close]

BLAST of Spo04893.1 vs. TAIR (Arabidopsis)
Match: AT1G27970.2 (nuclear transport factor 2B)

HSP 1 Score: 204.9 bits (520), Expect = 2.800e-53
Identity = 101/118 (85.59%), Postives = 106/118 (89.83%), Query Frame = 1

		  
Query: 1   MDPDAVSKAFVEHYYSTFDANRPGLANLYQDSSMLTFEGQKIQGSQAITAKLNSLPFQQC 60
           MDPDAVSKAFVEHYYSTFD NR GLA LYQ++SMLTFEGQKIQG Q+I AKL SLPFQQC
Sbjct: 4   MDPDAVSKAFVEHYYSTFDTNRVGLAGLYQEASMLTFEGQKIQGVQSIVAKLTSLPFQQC 63

Query: 61  QHHISTVDCQPSG-TGGMLVFVSGTLQLAGEQHALKFSQMFHLMPTPQQSFYVQNDIF 118
           +HHISTVDCQPSG   GMLVFVSG LQLAGE+HALKFSQMFHLMPTPQ SFYV NDIF
Sbjct: 64  KHHISTVDCQPSGPASGMLVFVSGNLQLAGEEHALKFSQMFHLMPTPQGSFYVFNDIF 121

[Close]

BLAST of Spo04893.1 vs. TAIR (Arabidopsis)
Match: AT1G27310.1 (nuclear transport factor 2A)

HSP 1 Score: 200.7 bits (509), Expect = 5.300e-52
Identity = 100/123 (81.30%), Postives = 110/123 (89.43%), Query Frame = 1

		  
Query: 1   MDPDAVSKAFVEHYYSTFDANRPGLANLYQDSSMLTFEGQKIQGSQAITAKLNSLPFQQC 60
           MDPDAV+KAFVEHYYSTFDANRPGL +LYQ+ SMLTFEGQKIQGSQ I AKL  LPFQQC
Sbjct: 1   MDPDAVAKAFVEHYYSTFDANRPGLVSLYQEGSMLTFEGQKIQGSQNIVAKLTGLPFQQC 60

Query: 61  QHHISTVDCQPSG-TGGMLVFVSGTLQLAGEQHALKFSQMFHLMPTPQQSFYVQNDIFRL 120
           +H+I+TVDCQPSG  GGMLVFVSG LQLAGEQHALKFSQMFHL+ + Q ++YV NDIFRL
Sbjct: 61  KHNITTVDCQPSGPAGGMLVFVSGNLQLAGEQHALKFSQMFHLI-SNQGNYYVFNDIFRL 120

Query: 121 NYA 123
           NYA
Sbjct: 121 NYA 122

[Close]

BLAST of Spo04893.1 vs. TAIR (Arabidopsis)
Match: AT1G11570.2 (NTF2-like)

HSP 1 Score: 144.4 bits (363), Expect = 4.500e-35
Identity = 72/122 (59.02%), Postives = 88/122 (72.13%), Query Frame = 1

		  
Query: 4   DAVSKAFVEHYYSTFDANRPGLANLYQDSSMLTFEGQKIQGSQAITAKLNSLPFQQCQHH 63
           + V+ AFV HYY  FD +R  L++LY  +S+LTFEGQ I G   I+ KL  LPF QC H 
Sbjct: 10  EEVASAFVNHYYHLFDNDRSSLSSLYNPTSLLTFEGQTIYGVDNISNKLKQLPFDQCHHL 69

Query: 64  ISTVDCQPS----GTGGMLVFVSGTLQLAGEQHALKFSQMFHLMPTPQQSFYVQNDIFRL 122
           ISTVD QPS    G GG+LVFVSG++QL GE H L+FSQ FHL+P  Q SF+VQN++FRL
Sbjct: 70  ISTVDSQPSSMAGGCGGILVFVSGSIQLHGEDHPLRFSQTFHLIPVLQGSFFVQNEMFRL 129

The following BLAST results are available for this feature:

BLAST of Spo04893.1 vs. NCBI nr
BLAST of Spo04893.1 vs. UniProtKB/TrEMBL
BLAST of Spo04893.1 vs. ExPASy Swiss-Prot
BLAST of Spo04893.1 vs. TAIR (Arabidopsis)

BLAST of Spo04893.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

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x 1


Match Name	E-value	Identity	Description
gi\|902165086\|gb\|KNA07048.1\|	4.3e-64	100.	hypothetical protein SOVF_1755...	[more]
gi\|731343134\|ref\|XP_010682741.1\|	1.0e-57	91.8	PREDICTED: nuclear transport f...	[more]
gi\|823215707\|ref\|XP_012440591.1\|	8.8e-57	90.1	PREDICTED: nuclear transport f...	[more]
gi\|823158571\|ref\|XP_012479122.1\|	5.7e-56	88.5	PREDICTED: nuclear transport f...	[more]
gi\|823135135\|ref\|XP_012467341.1\|	1.3e-55	87.7	PREDICTED: nuclear transport f...	[more]

BLAST of Spo04893.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

Position :

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x 1


Match Name	E-value	Identity	Description
A0A0K9QK11_SPIOL	3.0e-64	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8C5C1_BETVU	7.2e-58	91.8	Uncharacterized protein OS=Bet...	[more]
A0A0D2TVZ9_GOSRA	6.1e-57	90.1	Uncharacterized protein OS=Gos...	[more]
A0A0B0NJD6_GOSAR	6.1e-57	90.1	Nuclear transport factor 2-lik...	[more]
A0A0D2NDZ1_GOSRA	4.0e-56	88.5	Uncharacterized protein OS=Gos...	[more]

BLAST of Spo04893.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5

Position :

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x 1


Match Name	E-value	Identity	Description
NTF2_ARATH	3.7e-55	86.1	Nuclear transport factor 2 OS=...	[more]
NTF2_ORYSJ	2.3e-41	68.8	Nuclear transport factor 2 OS=...	[more]
NTF2_ASHGO	1.3e-28	53.6	Nuclear transport factor 2 OS=...	[more]
NTF2_EMENI	1.1e-27	52.0	Nuclear transport factor 2 OS=...	[more]
NTF2_SCHPO	1.9e-27	51.2	Nuclear transport factor 2 OS=...	[more]

BLAST of Spo04893.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 3

Position :

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Match Name	E-value	Identity	Description
AT1G27970.2	2.8e-53	85.5	nuclear transport factor 2B	[more]
AT1G27310.1	5.3e-52	81.3	nuclear transport factor 2A	[more]
AT1G11570.2	4.5e-35	59.0	NTF2-like	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002075	Nuclear transport factor 2	PFAM	PF02136	NTF2	coord: 6..119 score: 1.9
IPR018222	Nuclear transport factor 2, eukaryote	PROFILE	PS50177	NTF2_DOMAIN	coord: 6..119 score: 3
None	No IPR available	PANTHER	PTHR12612	NUCLEAR TRANSPORT FACTOR 2	coord: 1..122 score: 4.6

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006810	transport
biological_process	GO:0061025	membrane fusion
biological_process	GO:0010363	regulation of plant-type hypersensitive response
biological_process	GO:0043269	regulation of ion transport
biological_process	GO:0006612	protein targeting to membrane
biological_process	GO:0016558	protein import into peroxisome matrix
biological_process	GO:0006606	protein import into nucleus
biological_process	GO:0043069	negative regulation of programmed cell death
biological_process	GO:0006862	nucleotide transport
biological_process	GO:0010351	lithium ion transport
biological_process	GO:0006869	lipid transport
biological_process	GO:0006891	intra-Golgi vesicle-mediated transport
biological_process	GO:0006888	ER to Golgi vesicle-mediated transport
biological_process	GO:0015802	basic amino acid transport
biological_process	GO:0015696	ammonium transport
biological_process	GO:0043090	amino acid import
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005635	nuclear envelope
cellular_component	GO:0005886	plasma membrane
molecular_function	GO:0008565	protein transporter activity
molecular_function	GO:0008536	Ran GTPase binding