Spo04968.1 (mRNA) | SpinachBase

Overview


Name	Spo04968.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	LITAF-domain-containing protein
Location	chr1 : 47697837 .. 47699620 (+)
Sequence length	1037

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAGAGAGAAAAAAAAAAAATCGTCATGAATTCCCAATTGTTGCCGGCGTAGAAAATTCAAAGGCGCGTTACTCAATTAATTATAAAAATCAAAATCAAAATAAAATTGGACCTCCAAAATCACTCCTCTCACGAATCTTTTTCTCCACTCCAACAATTTCGATTCGCCTCCAATCAAACAATAATTCCCAGTCAAAATCAAAAGTCAAATTAAAATTAGAATCAATCAAACAATTTTCCTGAATCTGAATTTCTGAAGAAGAAGATGGGGAAGAAAGAGGAAGAGACAGTCCTCGGAATTCCTTACACAGGAGGACATCCGCCACCAGGAATGGTGTATCAGCCACAACCACCTCCTCAGCCTCAATATTACTACGTCGCTAAAAATCCTTATCAAAGCGGCATTCTTCCTCCCAACGCCATTTTCGACGATCCTAAAGGTGCCCCTATTCATCAGACTTTTTACAGAGATACCCCTGCTCCTTTCTCCTGCGTTTTCTGCTCCCATTCTTCCGTCACCTCCGTCAGGTCACTCTCTTTCTCTCTCTCCTCCTCCTTCGTTTTTCTCTTCTTTCGTACATTTAAATTGCTAGGTTTTTCATAAATTGCTTCAATTTGAGTTTGATCAGTCAATTTGGCGGTCAAGGATATATCTTTTTCCTTGATTTCATAAATCTTTCAGTTTTCTTGCAATTTCTAGGTCAACTAGTACAATTTGTTGCAATTGCTTATGTAAATTAACTTGAATAAATAGCTATATTACCCACTTTCTCTTTTGACATTGATGGCAGAGAAGCCTAATTTGAAAGAATTCTGCATATATAAAAATGCCTAACCATCAAACCCCAGGAGAGTTATTGCACATTTGTGGTGATTTTTTCAAACAAACATGTAATTCGTGTATAAAAATGATACAAGATGATGTTGGGGGTTTCAATCTTTCATTTGGTGATTCACATACAATATTTCGTAGTTTAATGCTGGTATTCACACAAGTACTTGTGTATAAAAAGAAGTTATTGTATTCTAAAGTTTAAAGTTCCTACTTTGTTCTATTAACTGGTCATTGTATGCTCAATGCTCTACTGCATATTTAAAGGTTCCCATTCCTAATTATCTAATTTGTAAATGCAATGCAGGTCGAAACCTAGTCTTGCAGCATTTATTGGCTGTATGATGCCGGCGATGCTAGGATTTTGCTTCCTTTGCCCTTCCATGGATTGTCTATGGCATAAGTATCACTATTGCCCTAGATGTGGAGAAAAGGTATCAAAATCACTAAACCCATTTGTACTGACATTCGATTTTTTTACATTTCGTTGTTCTTGTGCTTTTAACAACCTTATTACTAATACTATATGGAGTACTGCTAACTATTTTTGCTTTATTTTTGTTAATACAGGTTGCTGACTTTGAGAAATCAGATCCCTGTGCTGTGATGGATCCTCCGCATTGGGTTGAGAGGAGTTTTGCACTAACCAGCTGAAGCTGATCAGATGATGGTTAGTTTGTCTGATGTCAAGCCTTCTCTCCCCTTTCTCTACTGTATGCCCTATATAGATTATGAATGTAACACATGAGCTGAGGTGTGAATAATTTAATGGCGTGTCATGTGTTGAAACTTTGTGCATTGTAACTGTACTTGTACTACCTTCATAGTATACTCTATACAACTATCTTGTTATAGGTGATATTACCTATTCCTGTTATGAATTTTGCGCAGATTCTATTGTCTTATATTTTGGTCAGACACATCACACAATGAATTAATTGCAGAAACAAAG

mRNA sequence

AAAGAGAGAAAAAAAAAAAATCGTCATGAATTCCCAATTGTTGCCGGCGTAGAAAATTCAAAGGCGCGTTACTCAATTAATTATAAAAATCAAAATCAAAATAAAATTGGACCTCCAAAATCACTCCTCTCACGAATCTTTTTCTCCACTCCAACAATTTCGATTCGCCTCCAATCAAACAATAATTCCCAGTCAAAATCAAAAGTCAAATTAAAATTAGAATCAATCAAACAATTTTCCTGAATCTGAATTTCTGAAGAAGAAGATGGGGAAGAAAGAGGAAGAGACAGTCCTCGGAATTCCTTACACAGGAGGACATCCGCCACCAGGAATGGTGTATCAGCCACAACCACCTCCTCAGCCTCAATATTACTACGTCGCTAAAAATCCTTATCAAAGCGGCATTCTTCCTCCCAACGCCATTTTCGACGATCCTAAAGGTGCCCCTATTCATCAGACTTTTTACAGAGATACCCCTGCTCCTTTCTCCTGCGTTTTCTGCTCCCATTCTTCCGTCACCTCCGTCAGGTCGAAACCTAGTCTTGCAGCATTTATTGGCTGTATGATGCCGGCGATGCTAGGATTTTGCTTCCTTTGCCCTTCCATGGATTGTCTATGGCATAAGTATCACTATTGCCCTAGATGTGGAGAAAAGGTTGCTGACTTTGAGAAATCAGATCCCTGTGCTGTGATGGATCCTCCGCATTGGGTTGAGAGGAGTTTTGCACTAACCAGCTGAAGCTGATCAGATGATGGTTAGTTTGTCTGATGTCAAGCCTTCTCTCCCCTTTCTCTACTGTATGCCCTATATAGATTATGAATGTAACACATGAGCTGAGGTGTGAATAATTTAATGGCGTGTCATGTGTTGAAACTTTGTGCATTGTAACTGTACTTGTACTACCTTCATAGTATACTCTATACAACTATCTTGTTATAGGTGATATTACCTATTCCTGTTATGAATTTTGCGCAGATTCTATTGTCTTATATTTTGGTCAGACACATCACACAATGAATTAATTGCAGAAACAAAG

Coding sequence (CDS)

ATGGGGAAGAAAGAGGAAGAGACAGTCCTCGGAATTCCTTACACAGGAGGACATCCGCCACCAGGAATGGTGTATCAGCCACAACCACCTCCTCAGCCTCAATATTACTACGTCGCTAAAAATCCTTATCAAAGCGGCATTCTTCCTCCCAACGCCATTTTCGACGATCCTAAAGGTGCCCCTATTCATCAGACTTTTTACAGAGATACCCCTGCTCCTTTCTCCTGCGTTTTCTGCTCCCATTCTTCCGTCACCTCCGTCAGGTCGAAACCTAGTCTTGCAGCATTTATTGGCTGTATGATGCCGGCGATGCTAGGATTTTGCTTCCTTTGCCCTTCCATGGATTGTCTATGGCATAAGTATCACTATTGCCCTAGATGTGGAGAAAAGGTTGCTGACTTTGAGAAATCAGATCCCTGTGCTGTGATGGATCCTCCGCATTGGGTTGAGAGGAGTTTTGCACTAACCAGCTGA

Protein sequence

MGKKEEETVLGIPYTGGHPPPGMVYQPQPPPQPQYYYVAKNPYQSGILPPNAIFDDPKGAPIHQTFYRDTPAPFSCVFCSHSSVTSVRSKPSLAAFIGCMMPAMLGFCFLCPSMDCLWHKYHYCPRCGEKVADFEKSDPCAVMDPPHWVERSFALTS

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo04968	Spo04968	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo04968.1	Spo04968.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo04968.1.exon.1	Spo04968.1.exon.1	exon
Spo04968.1.exon.2	Spo04968.1.exon.2	exon
Spo04968.1.exon.3	Spo04968.1.exon.3	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo04968.1.utr5p.1	Spo04968.1.utr5p.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo04968.1.CDS.1	Spo04968.1.CDS.1	CDS
Spo04968.1.CDS.2	Spo04968.1.CDS.2	CDS
Spo04968.1.CDS.3	Spo04968.1.CDS.3	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo04968.1.utr3p.1	Spo04968.1.utr3p.1	three_prime_UTR

Homology

[Close]

BLAST of Spo04968.1 vs. NCBI nr
Match: gi|902236102|gb|KNA24207.1| (hypothetical protein SOVF_017550 [Spinacia oleracea])

HSP 1 Score: 347.1 bits (889), Expect = 1.700e-92
Identity = 157/157 (100.00%), Postives = 157/157 (100.00%), Query Frame = 1


		  
Query: 1   MGKKEEETVLGIPYTGGHPPPGMVYQPQPPPQPQYYYVAKNPYQSGILPPNAIFDDPKGA 60
           MGKKEEETVLGIPYTGGHPPPGMVYQPQPPPQPQYYYVAKNPYQSGILPPNAIFDDPKGA
Sbjct: 1   MGKKEEETVLGIPYTGGHPPPGMVYQPQPPPQPQYYYVAKNPYQSGILPPNAIFDDPKGA 60

Query: 61  PIHQTFYRDTPAPFSCVFCSHSSVTSVRSKPSLAAFIGCMMPAMLGFCFLCPSMDCLWHK 120
           PIHQTFYRDTPAPFSCVFCSHSSVTSVRSKPSLAAFIGCMMPAMLGFCFLCPSMDCLWHK
Sbjct: 61  PIHQTFYRDTPAPFSCVFCSHSSVTSVRSKPSLAAFIGCMMPAMLGFCFLCPSMDCLWHK 120

Query: 121 YHYCPRCGEKVADFEKSDPCAVMDPPHWVERSFALTS 158
           YHYCPRCGEKVADFEKSDPCAVMDPPHWVERSFALTS
Sbjct: 121 YHYCPRCGEKVADFEKSDPCAVMDPPHWVERSFALTS 157

[Close]

BLAST of Spo04968.1 vs. NCBI nr
Match: gi|731343002|ref|XP_010682673.1| (PREDICTED: uncharacterized protein LOC104897488 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 305.4 bits (781), Expect = 5.600e-80
Identity = 137/157 (87.26%), Postives = 146/157 (92.99%), Query Frame = 1


		  
Query: 3   KKEEETVLGIPYTGGHPPPGMVYQPQPP--PQPQYYYVAKNPYQSGILPPNAIFDDPKGA 62
           KK+EETVLGIPYTGG+PPP M YQPQPP  PQPQY+YV +NPYQ G LPPNAIFDDPKG 
Sbjct: 2   KKDEETVLGIPYTGGNPPPVMAYQPQPPAQPQPQYFYVGENPYQRGTLPPNAIFDDPKGV 61

Query: 63  PIHQTFYRDTPAPFSCVFCSHSSVTSVRSKPSLAAFIGCMMPAMLGFCFLCPSMDCLWHK 122
           PIHQTFYRDTPAPF+CVFC+HSS+TSV+SKPSLAA IGCM+P MLGFCFLCPSMDCLWHK
Sbjct: 62  PIHQTFYRDTPAPFTCVFCAHSSITSVKSKPSLAAVIGCMIPMMLGFCFLCPSMDCLWHK 121

Query: 123 YHYCPRCGEKVADFEKSDPCAVMDPPHWVERSFALTS 158
           YHYCPRCGEKVADFEKSDPCAVMDPP WVERSFALTS
Sbjct: 122 YHYCPRCGEKVADFEKSDPCAVMDPPFWVERSFALTS 158

[Close]

BLAST of Spo04968.1 vs. NCBI nr
Match: gi|695055386|ref|XP_009415868.1| (PREDICTED: uncharacterized protein LOC103996641 [Musa acuminata subsp. malaccensis])

HSP 1 Score: 229.9 bits (585), Expect = 3.000e-57
Identity = 106/166 (63.86%), Postives = 122/166 (73.49%), Query Frame = 1


		  
Query: 1   MGKKE--EETVLGIPY---------TGGHPPPGMVYQPQPPPQPQYYYVAKNPYQSGILP 60
           M  KE  EE  LG+PY          G  PPP     P PPPQ Q YYV +NPYQ+G++P
Sbjct: 1   MATKEMGEEPALGVPYGYAPASYYGQGAAPPP-----PPPPPQQQMYYVGQNPYQAGMIP 60

Query: 61  PNAIFDDPKGAPIHQTFYRDTPAPFSCVFCSHSSVTSVRSKPSLAAFIGCMMPAMLGFCF 120
           PNA+F DPKG P+ QT +RDTPAPF CV+C  S +T+VRSKPSLAA +GCMMP MLG CF
Sbjct: 61  PNAVFGDPKGIPLQQTMFRDTPAPFQCVYCGSSGITTVRSKPSLAAVVGCMMPFMLGVCF 120

Query: 121 LCPSMDCLWHKYHYCPRCGEKVADFEKSDPCAVMDPPHWVERSFAL 156
           LCPSMDCLWHKYHYCP CG+KVADF+KSDPC V+D P W E SFA+
Sbjct: 121 LCPSMDCLWHKYHYCPSCGQKVADFKKSDPCLVVDMPRWHEESFAV 161

[Close]

BLAST of Spo04968.1 vs. NCBI nr
Match: gi|1009167716|ref|XP_015902268.1| (PREDICTED: uncharacterized protein LOC107435224 [Ziziphus jujuba])

HSP 1 Score: 227.3 bits (578), Expect = 1.900e-56
Identity = 101/153 (66.01%), Postives = 114/153 (74.51%), Query Frame = 1


		  
Query: 3   KKEEETVLGIPYTGGHPPPGMVYQPQPPPQPQYYYVAKNPYQSGILPPNAIFDDPKGAPI 62
           K  EE V+G+PY                      Y ++NPYQ+G +PPNA+F DPKG PI
Sbjct: 4   KNGEEVVMGVPY----------------------YASQNPYQAGTIPPNAVFGDPKGIPI 63

Query: 63  HQTFYRDTPAPFSCVFCSHSSVTSVRSKPSLAAFIGCMMPAMLGFCFLCPSMDCLWHKYH 122
            QT YRDTPAPF+CV+C +S VT+VRSKPSLAA IGCMMP MLG CFLCPSMDCLWHKYH
Sbjct: 64  QQTIYRDTPAPFNCVYCGNSGVTTVRSKPSLAAVIGCMMPMMLGICFLCPSMDCLWHKYH 123

Query: 123 YCPRCGEKVADFEKSDPCAVMDPPHWVERSFAL 156
           YCP C EKVADFEKSDPCAVMDPPHW ++SFAL
Sbjct: 124 YCPSCNEKVADFEKSDPCAVMDPPHWTQQSFAL 134

[Close]

BLAST of Spo04968.1 vs. NCBI nr
Match: gi|734386453|gb|KHN24978.1| (hypothetical protein glysoja_027092 [Glycine soja])

HSP 1 Score: 226.1 bits (575), Expect = 4.300e-56
Identity = 99/156 (63.46%), Postives = 117/156 (75.00%), Query Frame = 1


		  
Query: 1   MGKKEEETVLGIPYTGGHPPPGMVYQPQPPPQPQYYYVAKNPYQSGILPPNAIFDDPKGA 60
           M KKEE+ V+G+P                      YY  +N YQ GI+PPNA+F DPKG 
Sbjct: 1   MEKKEEKVVVGVPVP-------------------VYYGGENEYQRGIIPPNAVFGDPKGI 60

Query: 61  PIHQTFYRDTPAPFSCVFCSHSSVTSVRSKPSLAAFIGCMMPAMLGFCFLCPSMDCLWHK 120
           PI QT YRDTPAPF+C +C+H+++T+VRSKPSLAAF+GC+MP MLG CFLCPSMDCLWHK
Sbjct: 61  PIQQTIYRDTPAPFNCPYCAHTALTTVRSKPSLAAFVGCLMPMMLGVCFLCPSMDCLWHK 120

Query: 121 YHYCPRCGEKVADFEKSDPCAVMDPPHWVERSFALT 157
           YHYCP+C EKVADFEKSDPC VMDPPHW + SFAL+
Sbjct: 121 YHYCPKCQEKVADFEKSDPCVVMDPPHWTQESFALS 137

[Close]

BLAST of Spo04968.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RZC5_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_017550 PE=4 SV=1)

HSP 1 Score: 347.1 bits (889), Expect = 1.200e-92
Identity = 157/157 (100.00%), Postives = 157/157 (100.00%), Query Frame = 1


		  
Query: 1   MGKKEEETVLGIPYTGGHPPPGMVYQPQPPPQPQYYYVAKNPYQSGILPPNAIFDDPKGA 60
           MGKKEEETVLGIPYTGGHPPPGMVYQPQPPPQPQYYYVAKNPYQSGILPPNAIFDDPKGA
Sbjct: 1   MGKKEEETVLGIPYTGGHPPPGMVYQPQPPPQPQYYYVAKNPYQSGILPPNAIFDDPKGA 60

Query: 61  PIHQTFYRDTPAPFSCVFCSHSSVTSVRSKPSLAAFIGCMMPAMLGFCFLCPSMDCLWHK 120
           PIHQTFYRDTPAPFSCVFCSHSSVTSVRSKPSLAAFIGCMMPAMLGFCFLCPSMDCLWHK
Sbjct: 61  PIHQTFYRDTPAPFSCVFCSHSSVTSVRSKPSLAAFIGCMMPAMLGFCFLCPSMDCLWHK 120

Query: 121 YHYCPRCGEKVADFEKSDPCAVMDPPHWVERSFALTS 158
           YHYCPRCGEKVADFEKSDPCAVMDPPHWVERSFALTS
Sbjct: 121 YHYCPRCGEKVADFEKSDPCAVMDPPHWVERSFALTS 157

[Close]

BLAST of Spo04968.1 vs. UniProtKB/TrEMBL
Match: A0A0J8C5M4_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g149940 PE=4 SV=1)

HSP 1 Score: 305.4 bits (781), Expect = 3.900e-80
Identity = 137/157 (87.26%), Postives = 146/157 (92.99%), Query Frame = 1


		  
Query: 3   KKEEETVLGIPYTGGHPPPGMVYQPQPP--PQPQYYYVAKNPYQSGILPPNAIFDDPKGA 62
           KK+EETVLGIPYTGG+PPP M YQPQPP  PQPQY+YV +NPYQ G LPPNAIFDDPKG 
Sbjct: 2   KKDEETVLGIPYTGGNPPPVMAYQPQPPAQPQPQYFYVGENPYQRGTLPPNAIFDDPKGV 61

Query: 63  PIHQTFYRDTPAPFSCVFCSHSSVTSVRSKPSLAAFIGCMMPAMLGFCFLCPSMDCLWHK 122
           PIHQTFYRDTPAPF+CVFC+HSS+TSV+SKPSLAA IGCM+P MLGFCFLCPSMDCLWHK
Sbjct: 62  PIHQTFYRDTPAPFTCVFCAHSSITSVKSKPSLAAVIGCMIPMMLGFCFLCPSMDCLWHK 121

Query: 123 YHYCPRCGEKVADFEKSDPCAVMDPPHWVERSFALTS 158
           YHYCPRCGEKVADFEKSDPCAVMDPP WVERSFALTS
Sbjct: 122 YHYCPRCGEKVADFEKSDPCAVMDPPFWVERSFALTS 158

[Close]

BLAST of Spo04968.1 vs. UniProtKB/TrEMBL
Match: A0A0B2QYS8_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_027092 PE=4 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 3.000e-56
Identity = 99/156 (63.46%), Postives = 117/156 (75.00%), Query Frame = 1


		  
Query: 1   MGKKEEETVLGIPYTGGHPPPGMVYQPQPPPQPQYYYVAKNPYQSGILPPNAIFDDPKGA 60
           M KKEE+ V+G+P                      YY  +N YQ GI+PPNA+F DPKG 
Sbjct: 1   MEKKEEKVVVGVPVP-------------------VYYGGENEYQRGIIPPNAVFGDPKGI 60

Query: 61  PIHQTFYRDTPAPFSCVFCSHSSVTSVRSKPSLAAFIGCMMPAMLGFCFLCPSMDCLWHK 120
           PI QT YRDTPAPF+C +C+H+++T+VRSKPSLAAF+GC+MP MLG CFLCPSMDCLWHK
Sbjct: 61  PIQQTIYRDTPAPFNCPYCAHTALTTVRSKPSLAAFVGCLMPMMLGVCFLCPSMDCLWHK 120

Query: 121 YHYCPRCGEKVADFEKSDPCAVMDPPHWVERSFALT 157
           YHYCP+C EKVADFEKSDPC VMDPPHW + SFAL+
Sbjct: 121 YHYCPKCQEKVADFEKSDPCVVMDPPHWTQESFALS 137

[Close]

BLAST of Spo04968.1 vs. UniProtKB/TrEMBL
Match: I1KZF8_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_08G360100 PE=4 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 3.000e-56
Identity = 99/156 (63.46%), Postives = 117/156 (75.00%), Query Frame = 1


		  
Query: 1   MGKKEEETVLGIPYTGGHPPPGMVYQPQPPPQPQYYYVAKNPYQSGILPPNAIFDDPKGA 60
           M KKEE+ V+G+P                      YY  +N YQ GI+PPNA+F DPKG 
Sbjct: 1   MEKKEEKVVVGVPVP-------------------VYYGGENEYQRGIIPPNAVFGDPKGI 60

Query: 61  PIHQTFYRDTPAPFSCVFCSHSSVTSVRSKPSLAAFIGCMMPAMLGFCFLCPSMDCLWHK 120
           PI QT YRDTPAPF+C +C+H+++T+VRSKPSLAAF+GC+MP MLG CFLCPSMDCLWHK
Sbjct: 61  PIQQTIYRDTPAPFNCPYCAHTALTTVRSKPSLAAFVGCLMPMMLGVCFLCPSMDCLWHK 120

Query: 121 YHYCPRCGEKVADFEKSDPCAVMDPPHWVERSFALT 157
           YHYCP+C EKVADFEKSDPC VMDPPHW + SFAL+
Sbjct: 121 YHYCPKCQEKVADFEKSDPCVVMDPPHWTQESFALS 137

[Close]

BLAST of Spo04968.1 vs. UniProtKB/TrEMBL
Match: C6SYT8_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 8.700e-56
Identity = 98/156 (62.82%), Postives = 117/156 (75.00%), Query Frame = 1


		  
Query: 1   MGKKEEETVLGIPYTGGHPPPGMVYQPQPPPQPQYYYVAKNPYQSGILPPNAIFDDPKGA 60
           M KKEE+ V+G+P                      YY  +N YQ GI+PPNA+F DPKG 
Sbjct: 1   MEKKEEKVVVGVPVP-------------------VYYGGENEYQRGIIPPNAVFGDPKGI 60

Query: 61  PIHQTFYRDTPAPFSCVFCSHSSVTSVRSKPSLAAFIGCMMPAMLGFCFLCPSMDCLWHK 120
           PI QT YRDTPAPF+C +C+H+++T+VRSKPSLAAF+GC+MP MLG CFLCPSMDCLWHK
Sbjct: 61  PIQQTIYRDTPAPFNCPYCAHTALTTVRSKPSLAAFVGCLMPMMLGVCFLCPSMDCLWHK 120

Query: 121 YHYCPRCGEKVADFEKSDPCAVMDPPHWVERSFALT 157
           YHYCP+C EKVADFE+SDPC VMDPPHW + SFAL+
Sbjct: 121 YHYCPKCQEKVADFEESDPCVVMDPPHWTQESFALS 137

[Close]

BLAST of Spo04968.1 vs. TAIR (Arabidopsis)
Match: AT5G13190.1 (LPS-induced tumor necrosis factor alpha factor (InterPro:IPR006629))

HSP 1 Score: 204.5 bits (519), Expect = 4.700e-53
Identity = 90/152 (59.21%), Postives = 110/152 (72.37%), Query Frame = 1


		  
Query: 4   KEEETVLGIPYTGGHPPPGMVYQPQPPPQPQYYYVAKNPYQSGILPPNAIFDDPKGAPIH 63
           KE  TV+G+PY                      Y  +NPYQ+GI+PPNAI+ DP GAPI 
Sbjct: 3   KEGTTVIGVPY----------------------YAGQNPYQAGIVPPNAIYGDPLGAPIQ 62

Query: 64  QTFYRDTPAPFSCVFCSHSSVTSVRSKPSLAAFIGCMMPAMLGFCFLCPSMDCLWHKYHY 123
           QT YRDTPAPF+C++C ++ +T++RSKP +AA + CMMP MLGFCFLCPSMDCLW+K H+
Sbjct: 63  QTIYRDTPAPFNCLYCGNTGLTNLRSKPGVAAVVACMMPFMLGFCFLCPSMDCLWNKQHH 122

Query: 124 CPRCGEKVADFEKSDPCAVMDPPHWVERSFAL 156
           CP+CG KVADFEKSDPC VMDPP W + SFAL
Sbjct: 123 CPQCGNKVADFEKSDPCLVMDPPQWKQPSFAL 132

The following BLAST results are available for this feature:

BLAST of Spo04968.1 vs. NCBI nr
BLAST of Spo04968.1 vs. UniProtKB/TrEMBL
BLAST of Spo04968.1 vs. ExPASy Swiss-Prot
BLAST of Spo04968.1 vs. TAIR (Arabidopsis)

BLAST of Spo04968.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902236102\|gb\|KNA24207.1\|	1.7e-92	100.	hypothetical protein SOVF_0175...	[more]
gi\|731343002\|ref\|XP_010682673.1\|	5.6e-80	87.2	PREDICTED: uncharacterized pro...	[more]
gi\|695055386\|ref\|XP_009415868.1\|	3.0e-57	63.8	PREDICTED: uncharacterized pro...	[more]
gi\|1009167716\|ref\|XP_015902268.1\|	1.9e-56	66.0	PREDICTED: uncharacterized pro...	[more]
gi\|734386453\|gb\|KHN24978.1\|	4.3e-56	63.4	hypothetical protein glysoja_0...	[more]

BLAST of Spo04968.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9RZC5_SPIOL	1.2e-92	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8C5M4_BETVU	3.9e-80	87.2	Uncharacterized protein OS=Bet...	[more]
A0A0B2QYS8_GLYSO	3.0e-56	63.4	Uncharacterized protein OS=Gly...	[more]
I1KZF8_SOYBN	3.0e-56	63.4	Uncharacterized protein OS=Gly...	[more]
C6SYT8_SOYBN	8.7e-56	62.8	Putative uncharacterized prote...	[more]

BLAST of Spo04968.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Spo04968.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1


Match Name	E-value	Identity	Description
AT5G13190.1	4.7e-53	59.2	LPS-induced tumor necrosis fac...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006629	LPS-induced tumour necrosis factor alpha factor	PFAM	PF10601	zf-LITAF-like	coord: 70..133 score: 1.3
IPR006629	LPS-induced tumour necrosis factor alpha factor	SMART	SM00714	litaf	coord: 71..136 score: 9.9
None	No IPR available	PANTHER	PTHR23292	LIPOPOLYSACCHARIDE-INDUCED TRANSCRIPTION FACTOR REGULATING TUMOR NECROSIS FACTOR ALPHA	coord: 6..155 score: 6.5

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030968	endoplasmic reticulum unfolded protein response
biological_process	GO:0009867	jasmonic acid mediated signaling pathway
biological_process	GO:0034051	negative regulation of plant-type hypersensitive response
biological_process	GO:0006612	protein targeting to membrane
biological_process	GO:0009646	response to absence of light
biological_process	GO:0009863	salicylic acid mediated signaling pathway
cellular_component	GO:0005886	plasma membrane