Spo05084.1 (mRNA) | SpinachBase

Overview


Name	Spo05084.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	Tumor necrosis factor receptor superfamily member 21
Location	chr4 : 112540490 .. 112545385 (+)
Sequence length	1719

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGACAACTTTGCGAAGGTAATCGTTTGGAAATTTATCCAGTTGCCACTCCTCTCTGAACTCCCGCACAAACAAAACGCATTTCTCCTCAACTCAAACCCCTCAAACCCCCCAAACCCTAATTTTCAATTTCTTCATTTGTTTTCCCTGCAAACTGCTAAAGATCACCCCTAATTTGACATCAACATCAAGACGACGCATACTATATTTGGAAATTTTAGGAGAGAGAAGAAATGTGGAGGCGGGTATGGAGCAGCAGCAATGGAGGAGGAGGAGAAATTGGGGGAGGAGCAGGAGCGATGATGATGCAATGTGTGAGATTTATGTCGAAGAAACGAGCTGAGAATTTAAGGAAGATAAACCCTAAAGTTCCCTATGGTGAGGCTACTTCCATTGCTCAAAATCTCTTCAATTTGATCCAGCATCGTGGCCCTGTCACCATTGGCAGTGCTTGGACTAACGCACAGGTTTACTCTCTCTCTCTTAAAATCTGATTATTTGTTGTTTTTTCATTAATTTGATAGTTAGAATTGTGTTTAGATTTGATTTGCTTTCAATTACGAGTAATTGTATCTTCCGTCTGATGATGTTGGTTGCTGATTGGAGCGCTAACCTTGTGTGATTGCTTGCTTAGAAATGCTGAATAATATGAAAAACCTCGGTAAGGATCGAAATATGTCATTGTAATGATGCTGATAATTTGTAATCAAGAAATGTTTGTCCATAATGCTGTCATTCGGAGTAGGGTAGGGTGTAGGAATGATGCCATGTTTGGATTGTTGGGTATATAGAGTGTGGATTGGGGATTCGTGTTTGAATTATTACATTACGGCCTTATTTGGTTGGGAGGAATTGGAAGGAAAAGAAAAGAAAGGAAAGGAAAGGAAAAATAACTTTTGTTGTGTTTGGTTCCAAAAATTATATGGGAAGTTGGTTCCAAAAATTATATGGGAATTGGAAGGAAAGGAAGGGAATTGGAAGGAAAGCTCATTTTATAAAAGTTTCACTTTCCTTTACTCCCAAAATTGGAGCCCAAAATCGGAGGAATTTGGAAGGAAAGAGAAAATTAAAACCTGTCAAACAAAATATTAAATCTTATACCCACCTTTTCCCTTCCCTTCCTTTACTATTGTTGTACAAAACATGTGATTCCTATCATTTCCTTTCTATCATACCAAACATGGGAAAATATATTTTATTTTATTTCCTTTCTCTTCCCTTCTCTTGCCCTTCCTTTCTCATCCCTTCCCTTCCTTTACTAATATTGAACCAAATGAAGCCGTACGTGGCTTGGGAAGTTGGGATTTGGTAAAAGGTGCCCCAGTGAATTCCTTAATAGTTTTTTTTGGTAAGCAAGTTTAGATTTCTATTTTAATTCCAAAACAAAATTTTACCAACCAAAGGTGAGAAGGCACCACGAACAATATAAGATGGACCCTGATACAAAAACCCAAACCCAAAAAAAATATCCTAGGCATACCAGCCTAAAACAGACCTAATTACATCAAAAGAATACATCATTTACAAATGTTATCCAAAGAAATTCTATCATGTGAGGATTAATAATATGGTATCTACACTTGACATCTCCTTTCAGTTTCTTTACTAAACTGTCTATGTACACTAACTTTTGGTGTCAGTACACTTCATTTATGGCCTGCCACAGTTGGGAAATCAGAGCGACAAAATATGTTATGTAAAACCCTTTCCTGAATTTGTAGCAATTTCCATTTCTCATGCTTCTGATACTTCTGAACTTCTGACTAAATCCGCGCCAAGGCCTGACAGCATCACAACATTGTTTACCATATACACATTCAAAGAAAAGGTGGCCGTGGGTTTCATCTGCACTCCTGCACAGCAGGCACTGTTTGTCTGTGATTATGGCAAAATTCATAAGCCTGTCCTTGGTTTTCAGTTTTCAGCCTTTGCTTCATAACTAATCAGACTATAAATTTGTGTGTTATGAAGCTGAATGGTGATAGGAAGCTGAACATTGTAAAACCTTTTAAAACTAGTTTAGGTGAGCTACTCTGAATCCGTAGATTGTACGAAGAAAATTGTTGAACAATTTTTTGTTGCATTGATGAGGAATATGCAATTGGAGTTCGACAAAGATCGAGTGTCATATCCCATATCCCTGTGCCTAAATTGCTGCTGGAAGCTCCATGATCCTTCGAAATGACATTGATCAAAACATCAAAAGGCATGGCTTCTAATCAAAGAACTTACCCTGTTGTGTGCCTTTTAATCCTTAACCAATGCCCGTCCAAAACCTTGGGATATCTCTGCTTTGTAATGATCCAAAATTCCAAATAATTGTAGTTTCGCCCATTTCTCAATTCAGCACAGACAAATTGTTCTTGGTTCTAGCTGTTAGGGGTTGCAGAGAGTGATGAACATAGAGGCTGTTGAAGTGTACTCACCAAGACTCCCATTTAAAGTTATCAAAAGGGAGCACTTTACTACAAATGTACAATCTCTGGGGATATGATTGTCCTGATTTTCTATCATTACCAAAAACTCAGGAATCTTATGTGTATTCGTGTTATTTGAAGCTCTTCCGAGATGGTCTCCTGTTTCTTTTGATAATTACTTTTAAGGGACAGAATCATAGAGAAGATTGTAATATTTCAGCTGCTAGAGGAAGTTGAGCAACGGAAGTAGGATAACCCTACATAAAAGGCAAGACATTTAGAGTGGAGCAGAGGGAGGAACTATCCCACCGAAGTATAATCTGACGAGTGCCTGCTTATTCTTTTTCACGATCCCTATTAGTTTACCACTGGGATCCCTATTCTAATCACGATCTACTTTTCTTTGCCTCTCAGGATTTTTAGCCTAGAAATGTTATTGAGAAGCGAGTCATATGCCTAATAGCTCTATCCCAAATCAGGCGAGCTTGAAGACATCTTTTCTTCATACAGCAACTTAAGCGTGAAGGTTCCTAGCGAATTCCATTTTCACAAAATTTCCGAGGGGCAAAAAATGGAGATATCTGCATTATAGTATAGTTCTACCCAATTATCTCTTGTATATAACATGTTTTATGATCATTCTTAAATAAAACAAACTTCTTAGTTATAATTTCTGGAAGTCGTATAACAAATTTCACTATGCTGAAGTTTACCGTTTTAGTATCAGATATGAAAAAAATTGCAAGGTAGTGTTGTCAATGTGATTCCAAGCAGCTTGTTTAGTAACGCAAGGTGTATGATAGACCTTACTCTAGTTGGCTACAGTATCATAAAAAGTATTTTTCTAAGCTGTGCAGAAGCATGCATGTGTATAATGGATTTGGAGGTTAGGGATTTGGGGCAAATTTACTTTGATTCCAGCTCAGTTGCTTCAATTTTTTCATACTGTTTGCCACTTTGCCTTTGATCACTCAGTTGTTCCTTTCGTGCGATTCCTGCTTCTTTCTCTGTTGTGAACTTGTGATACTACTTTTAAGTAGAAGGTTTGGTCAATCACAAAAAAGAAAAAAAAAAGAAAGAAAAAAAACTAGAATGTTTCGATTGTTTACTACAGATGAACAGGGGCCTAAATATATTAGTTGCATCTTGAATAGCCAGGTAGTAAGTATGTCCAGTCTTGCCATGTTGGCTCCCTATTTTAAAAGGTAACACTTGTTGTTGGTGTAGGAAGCTGGCATAAGTGGAATAAACAGCAAAACACACATGAAGATATTGCTGAAATGGATGAGAGGTAAAAGGATGCTAAAGCAAGTTTGCCAGCAGGTCGGTTCAAACAAGAAGTTTCTGCTGTGCACGCCTCAAGATTCTGAAGCTGTGCAGGCAGCGGGGACTCCTAGAGTGAAGCTGCGAACTGAAAAATCTGCAAAATCAAGAAAAAAACACAAGTGATATGCCCTGTCAAAGGAGTCATTGCACTTTGCAGAATAATCTAGTCTATTGATTAGGTTTTCCCTTTGATAAACCAGGTTTTGATTGTTCATCTCCTCTTTAGTCTAAAATCAAGATGAATCTTGATAATGTATCAGAATGAAGGTTCTCTTCTTTCGCTTTCTGAACATTCAACTTTAGAGTGGCAACTGCAATTGATGTTTCAGCAGGCTGTTCTGCATCTCAGGGATGTGATTTCGTGAACACATCAAAATGTTCCCTTTTTAAGGTTTTAGGGTGTACTTTCAACTAGGGGTGTTCAAAAATACCCGACCCGCATTACCCGACCCGGCTACCCGCTGACCCGCCTTAAATGAACCGGGTATTTTTCTGTTTTTACTCAAATAATTGGGCCGGGTACCCGACCCGTGAAAGTATCCGGGTTGGGGCATGGGCCGTCTGTTTAGTTAGTCGGGTACCCGAATACCCGTTAACATATTTTAAAAAAAAGAAAATTAAAAGAAGAAGGGGGAGTGTGTAGGGTTTAGCTTTTCCCTTCTTTTCGTCTGTAGCCGCACAAAGTCACAAAGTCACAAACTTATCTTTCTCTCTCTTCCAGCTCTCACACAATTTACAATTCACTCTCACTTTTCAAAATACTCCACATAAACTCATTCGATCACTACTAGACTAGCATATACGGAGTACTCAACATGTCAAAAAATCGCCGCCCAAATACCATACCGCATCCACCAAGAACTACTTGCACGCCAGATTTAATGGATACAAGCTGCTTGCTACGGTCTTACCATCAATAAATAGATTTGTTTTCTTTTATTCTAATTTTTGAGAAATGAGAAGTATACTTTGTCAGTTTGTCTAATTCACACATCATTCTCTTTTAAATTCTCACTTTTTTTGAAAATTAAAAGAGGAAATGAATTTTTTCTTTCATTTTATTATTGTGAATTTGTTGGCGTTCATGGGTTTCACAAAGGAGTACTTGTAATTTGGTATTTTCGTTATATATAATCTCTAATTTGTAATCTCTTA

mRNA sequence

TGACAACTTTGCGAAGGTAATCGTTTGGAAATTTATCCAGTTGCCACTCCTCTCTGAACTCCCGCACAAACAAAACGCATTTCTCCTCAACTCAAACCCCTCAAACCCCCCAAACCCTAATTTTCAATTTCTTCATTTGTTTTCCCTGCAAACTGCTAAAGATCACCCCTAATTTGACATCAACATCAAGACGACGCATACTATATTTGGAAATTTTAGGAGAGAGAAGAAATGTGGAGGCGGGTATGGAGCAGCAGCAATGGAGGAGGAGGAGAAATTGGGGGAGGAGCAGGAGCGATGATGATGCAATGTGTGAGATTTATGTCGAAGAAACGAGCTGAGAATTTAAGGAAGATAAACCCTAAAGTTCCCTATGGTGAGGCTACTTCCATTGCTCAAAATCTCTTCAATTTGATCCAGCATCGTGGCCCTGTCACCATTGGCAGTGCTTGGACTAACGCACAGGAAGCTGGCATAAGTGGAATAAACAGCAAAACACACATGAAGATATTGCTGAAATGGATGAGAGGTAAAAGGATGCTAAAGCAAGTTTGCCAGCAGGTCGGTTCAAACAAGAAGTTTCTGCTGTGCACGCCTCAAGATTCTGAAGCTGTGCAGGCAGCGGGGACTCCTAGAGTGAAGCTGCGAACTGAAAAATCTGCAAAATCAAGAAAAAAACACAAGTGATATGCCCTGTCAAAGGAGTCATTGCACTTTGCAGAATAATCTAGTCTATTGATTAGGTTTTCCCTTTGATAAACCAGGTTTTGATTGTTCATCTCCTCTTTAGTCTAAAATCAAGATGAATCTTGATAATGTATCAGAATGAAGGTTCTCTTCTTTCGCTTTCTGAACATTCAACTTTAGAGTGGCAACTGCAATTGATGTTTCAGCAGGCTGTTCTGCATCTCAGGGATGTGATTTCGTGAACACATCAAAATGTTCCCTTTTTAAGGTTTTAGGGTGTACTTTCAACTAGGGGTGTTCAAAAATACCCGACCCGCATTACCCGACCCGGCTACCCGCTGACCCGCCTTAAATGAACCGGGTATTTTTCTGTTTTTACTCAAATAATTGGGCCGGGTACCCGACCCGTGAAAGTATCCGGGTTGGGGCATGGGCCGTCTGTTTAGTTAGTCGGGTACCCGAATACCCGTTAACATATTTTAAAAAAAAGAAAATTAAAAGAAGAAGGGGGAGTGTGTAGGGTTTAGCTTTTCCCTTCTTTTCGTCTGTAGCCGCACAAAGTCACAAAGTCACAAACTTATCTTTCTCTCTCTTCCAGCTCTCACACAATTTACAATTCACTCTCACTTTTCAAAATACTCCACATAAACTCATTCGATCACTACTAGACTAGCATATACGGAGTACTCAACATGTCAAAAAATCGCCGCCCAAATACCATACCGCATCCACCAAGAACTACTTGCACGCCAGATTTAATGGATACAAGCTGCTTGCTACGGTCTTACCATCAATAAATAGATTTGTTTTCTTTTATTCTAATTTTTGAGAAATGAGAAGTATACTTTGTCAGTTTGTCTAATTCACACATCATTCTCTTTTAAATTCTCACTTTTTTTGAAAATTAAAAGAGGAAATGAATTTTTTCTTTCATTTTATTATTGTGAATTTGTTGGCGTTCATGGGTTTCACAAAGGAGTACTTGTAATTTGGTATTTTCGTTATATATAATCTCTAATTTGTAATCTCTTA

Coding sequence (CDS)

ATGTGGAGGCGGGTATGGAGCAGCAGCAATGGAGGAGGAGGAGAAATTGGGGGAGGAGCAGGAGCGATGATGATGCAATGTGTGAGATTTATGTCGAAGAAACGAGCTGAGAATTTAAGGAAGATAAACCCTAAAGTTCCCTATGGTGAGGCTACTTCCATTGCTCAAAATCTCTTCAATTTGATCCAGCATCGTGGCCCTGTCACCATTGGCAGTGCTTGGACTAACGCACAGGAAGCTGGCATAAGTGGAATAAACAGCAAAACACACATGAAGATATTGCTGAAATGGATGAGAGGTAAAAGGATGCTAAAGCAAGTTTGCCAGCAGGTCGGTTCAAACAAGAAGTTTCTGCTGTGCACGCCTCAAGATTCTGAAGCTGTGCAGGCAGCGGGGACTCCTAGAGTGAAGCTGCGAACTGAAAAATCTGCAAAATCAAGAAAAAAACACAAGTGA

Protein sequence

MWRRVWSSSNGGGGEIGGGAGAMMMQCVRFMSKKRAENLRKINPKVPYGEATSIAQNLFNLIQHRGPVTIGSAWTNAQEAGISGINSKTHMKILLKWMRGKRMLKQVCQQVGSNKKFLLCTPQDSEAVQAAGTPRVKLRTEKSAKSRKKHK

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo05084	Spo05084	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo05084.1	Spo05084.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo05084.1.exon.1	Spo05084.1.exon.1	exon
Spo05084.1.exon.2	Spo05084.1.exon.2	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo05084.1.utr5p.1	Spo05084.1.utr5p.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo05084.1.CDS.1	Spo05084.1.CDS.1	CDS
Spo05084.1.CDS.2	Spo05084.1.CDS.2	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo05084.1.utr3p.1	Spo05084.1.utr3p.1	three_prime_UTR

Homology

[Close]

BLAST of Spo05084.1 vs. NCBI nr
Match: gi|902169666|gb|KNA07689.1| (hypothetical protein SOVF_168970 [Spinacia oleracea])

HSP 1 Score: 303.1 bits (775), Expect = 2.700e-79
Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 1


		  
Query: 1   MWRRVWSSSNGGGGEIGGGAGAMMMQCVRFMSKKRAENLRKINPKVPYGEATSIAQNLFN 60
           MWRRVWSSSNGGGGEIGGGAGAMMMQCVRFMSKKRAENLRKINPKVPYGEATSIAQNLFN
Sbjct: 1   MWRRVWSSSNGGGGEIGGGAGAMMMQCVRFMSKKRAENLRKINPKVPYGEATSIAQNLFN 60

Query: 61  LIQHRGPVTIGSAWTNAQEAGISGINSKTHMKILLKWMRGKRMLKQVCQQVGSNKKFLLC 120
           LIQHRGPVTIGSAWTNAQEAGISGINSKTHMKILLKWMRGKRMLKQVCQQVGSNKKFLLC
Sbjct: 61  LIQHRGPVTIGSAWTNAQEAGISGINSKTHMKILLKWMRGKRMLKQVCQQVGSNKKFLLC 120

Query: 121 TPQDSEAVQAAGTPRVKLRTEKSAKSRKKHK 152
           TPQDSEAVQAAGTPRVKLRTEKSAKSRKKHK
Sbjct: 121 TPQDSEAVQAAGTPRVKLRTEKSAKSRKKHK 151

[Close]

BLAST of Spo05084.1 vs. NCBI nr
Match: gi|731359654|ref|XP_010691396.1| (PREDICTED: uncharacterized protein LOC104904733 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 255.4 bits (651), Expect = 6.300e-65
Identity = 124/151 (82.12%), Postives = 140/151 (92.72%), Query Frame = 1


		  
Query: 1   MWRRVWSSSNGGGGEIGGGAGAMMMQCVRFMSKKRAENLRKINPKVPYGEATSIAQNLFN 60
           MWRRVW+S+NGG  EIGGG G MMM  VR+MS+KRAENLRKINPKVPY EATSIAQNL+N
Sbjct: 1   MWRRVWTSNNGGL-EIGGGGGTMMMNWVRYMSRKRAENLRKINPKVPYSEATSIAQNLYN 60

Query: 61  LIQHRGPVTIGSAWTNAQEAGISGINSKTHMKILLKWMRGKRMLKQVCQQVGSNKKFLLC 120
           LIQHRGP+TIG+AWTN QEAGISG++SKTHMKI+LKWMRGK+MLKQVCQ +GSNKKFLLC
Sbjct: 61  LIQHRGPLTIGNAWTNIQEAGISGLSSKTHMKIMLKWMRGKKMLKQVCQNIGSNKKFLLC 120

Query: 121 TPQDSEAVQAAGTPRVKLRTEKSAKSRKKHK 152
           TPQDS+AVQ+ G+PRVKLRTEKS+K RKKHK
Sbjct: 121 TPQDSQAVQSTGSPRVKLRTEKSSKLRKKHK 150

[Close]

BLAST of Spo05084.1 vs. NCBI nr
Match: gi|728849575|gb|KHG29018.1| (hypothetical protein F383_14372 [Gossypium arboreum])

HSP 1 Score: 150.6 bits (379), Expect = 2.200e-33
Identity = 84/154 (54.55%), Postives = 109/154 (70.78%), Query Frame = 1


		  
Query: 1   MWRRVWSSSNGGGGEIGGGAGAMMMQCVRFMSKKRAENLRKINPKVPYGEATSIAQNLFN 60
           MW      +N  GG   GG G+++   VR+MS+ RA N+RKINPKVP  EA SIA +L++
Sbjct: 1   MWLAGLVKNNVKGGN--GGVGSLL---VRYMSRTRAVNVRKINPKVPIPEAKSIASSLYD 60

Query: 61  LIQHRGPVTIGSAWTNAQEAGISGINSKTHMKILLKWMRGKRMLKQVCQQVGSNKKFLLC 120
           LI+ RGP+T+ + WT AQEAGI G+NSKTHMKI+LKWMRG+++LK  C QVGSNKKFL C
Sbjct: 61  LIKQRGPLTVPNTWTLAQEAGIGGLNSKTHMKIMLKWMRGRKLLKLFCNQVGSNKKFLHC 120

Query: 121 T-PQDSEAVQAAGTPRVKLRTEK--SAKSRKKHK 152
           T P++    Q+   P   L+T+K  SAK +KK K
Sbjct: 121 TLPEEPRTEQSESLPEPVLQTKKKPSAKRKKKTK 149

[Close]

BLAST of Spo05084.1 vs. NCBI nr
Match: gi|590674833|ref|XP_007039277.1| (Tumor necrosis factor receptor superfamily member 21 [Theobroma cacao])

HSP 1 Score: 147.9 bits (372), Expect = 1.400e-32
Identity = 74/135 (54.81%), Postives = 101/135 (74.81%), Query Frame = 1


		  
Query: 16  IGGGAGAMMMQCVRFMSKKRAENLRKINPKVPYGEATSIAQNLFNLIQHRGPVTIGSAWT 75
           I GG G++    VR+MS+ RA N+RKINPKVP  EA SIA +L+++I+  GP+T+ + W 
Sbjct: 11  IKGGHGSIGSLLVRYMSRSRAVNVRKINPKVPIPEARSIATSLYDIIKDHGPLTVSNTWI 70

Query: 76  NAQEAGISGINSKTHMKILLKWMRGKRMLKQVCQQVGSNKKFLLCT-PQDSEAVQAAGTP 135
           +A+EAGI G+NSKTHMKI+LKWMRG+RMLK  C QVGS+KKFL CT P++ +  Q     
Sbjct: 71  HAKEAGIGGLNSKTHMKIMLKWMRGRRMLKLFCNQVGSSKKFLHCTLPEEPQTNQLESPS 130

Query: 136 RVKLRTEKSAKSRKK 150
            +KL+T+K ++ RKK
Sbjct: 131 ELKLQTKKPSQKRKK 145

[Close]

BLAST of Spo05084.1 vs. NCBI nr
Match: gi|823214298|ref|XP_012439900.1| (PREDICTED: uncharacterized protein LOC105765384 [Gossypium raimondii])

HSP 1 Score: 146.7 bits (369), Expect = 3.200e-32
Identity = 77/139 (55.40%), Postives = 101/139 (72.66%), Query Frame = 1


		  
Query: 16  IGGGAGAMMMQCVRFMSKKRAENLRKINPKVPYGEATSIAQNLFNLIQHRGPVTIGSAWT 75
           + GG G +    VR+MS+ RA N+RKINPKVP  EA SIA +L++LI+ RGP+T+ + WT
Sbjct: 11  VKGGNGGVGSLLVRYMSRTRAVNVRKINPKVPIPEAKSIASSLYDLIKQRGPLTVPNTWT 70

Query: 76  NAQEAGISGINSKTHMKILLKWMRGKRMLKQVCQQVGSNKKFLLCT-PQDSEAVQAAGTP 135
            AQEAGI G+NS+THMKI+LKWMRG+++LK  C  VGSNKKFL CT P++ +  Q    P
Sbjct: 71  LAQEAGIGGLNSRTHMKIMLKWMRGRKLLKLFCNHVGSNKKFLHCTLPEEPQTEQLESLP 130

Query: 136 RVKLRTEK--SAKSRKKHK 152
              L+T+K  SAK +KK K
Sbjct: 131 EPVLQTKKKPSAKRKKKTK 149

[Close]

BLAST of Spo05084.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QKC4_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_168970 PE=4 SV=1)

HSP 1 Score: 303.1 bits (775), Expect = 1.800e-79
Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 1


		  
Query: 1   MWRRVWSSSNGGGGEIGGGAGAMMMQCVRFMSKKRAENLRKINPKVPYGEATSIAQNLFN 60
           MWRRVWSSSNGGGGEIGGGAGAMMMQCVRFMSKKRAENLRKINPKVPYGEATSIAQNLFN
Sbjct: 1   MWRRVWSSSNGGGGEIGGGAGAMMMQCVRFMSKKRAENLRKINPKVPYGEATSIAQNLFN 60

Query: 61  LIQHRGPVTIGSAWTNAQEAGISGINSKTHMKILLKWMRGKRMLKQVCQQVGSNKKFLLC 120
           LIQHRGPVTIGSAWTNAQEAGISGINSKTHMKILLKWMRGKRMLKQVCQQVGSNKKFLLC
Sbjct: 61  LIQHRGPVTIGSAWTNAQEAGISGINSKTHMKILLKWMRGKRMLKQVCQQVGSNKKFLLC 120

Query: 121 TPQDSEAVQAAGTPRVKLRTEKSAKSRKKHK 152
           TPQDSEAVQAAGTPRVKLRTEKSAKSRKKHK
Sbjct: 121 TPQDSEAVQAAGTPRVKLRTEKSAKSRKKHK 151

[Close]

BLAST of Spo05084.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BIR0_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_9g221500 PE=4 SV=1)

HSP 1 Score: 255.4 bits (651), Expect = 4.400e-65
Identity = 124/151 (82.12%), Postives = 140/151 (92.72%), Query Frame = 1


		  
Query: 1   MWRRVWSSSNGGGGEIGGGAGAMMMQCVRFMSKKRAENLRKINPKVPYGEATSIAQNLFN 60
           MWRRVW+S+NGG  EIGGG G MMM  VR+MS+KRAENLRKINPKVPY EATSIAQNL+N
Sbjct: 1   MWRRVWTSNNGGL-EIGGGGGTMMMNWVRYMSRKRAENLRKINPKVPYSEATSIAQNLYN 60

Query: 61  LIQHRGPVTIGSAWTNAQEAGISGINSKTHMKILLKWMRGKRMLKQVCQQVGSNKKFLLC 120
           LIQHRGP+TIG+AWTN QEAGISG++SKTHMKI+LKWMRGK+MLKQVCQ +GSNKKFLLC
Sbjct: 61  LIQHRGPLTIGNAWTNIQEAGISGLSSKTHMKIMLKWMRGKKMLKQVCQNIGSNKKFLLC 120

Query: 121 TPQDSEAVQAAGTPRVKLRTEKSAKSRKKHK 152
           TPQDS+AVQ+ G+PRVKLRTEKS+K RKKHK
Sbjct: 121 TPQDSQAVQSTGSPRVKLRTEKSSKLRKKHK 150

[Close]

BLAST of Spo05084.1 vs. UniProtKB/TrEMBL
Match: A0A0B0PRB6_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_14372 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 1.500e-33
Identity = 84/154 (54.55%), Postives = 109/154 (70.78%), Query Frame = 1


		  
Query: 1   MWRRVWSSSNGGGGEIGGGAGAMMMQCVRFMSKKRAENLRKINPKVPYGEATSIAQNLFN 60
           MW      +N  GG   GG G+++   VR+MS+ RA N+RKINPKVP  EA SIA +L++
Sbjct: 1   MWLAGLVKNNVKGGN--GGVGSLL---VRYMSRTRAVNVRKINPKVPIPEAKSIASSLYD 60

Query: 61  LIQHRGPVTIGSAWTNAQEAGISGINSKTHMKILLKWMRGKRMLKQVCQQVGSNKKFLLC 120
           LI+ RGP+T+ + WT AQEAGI G+NSKTHMKI+LKWMRG+++LK  C QVGSNKKFL C
Sbjct: 61  LIKQRGPLTVPNTWTLAQEAGIGGLNSKTHMKIMLKWMRGRKLLKLFCNQVGSNKKFLHC 120

Query: 121 T-PQDSEAVQAAGTPRVKLRTEK--SAKSRKKHK 152
           T P++    Q+   P   L+T+K  SAK +KK K
Sbjct: 121 TLPEEPRTEQSESLPEPVLQTKKKPSAKRKKKTK 149

[Close]

BLAST of Spo05084.1 vs. UniProtKB/TrEMBL
Match: A0A061G313_THECC (Tumor necrosis factor receptor superfamily member 21 OS=Theobroma cacao GN=TCM_015569 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 9.900e-33
Identity = 74/135 (54.81%), Postives = 101/135 (74.81%), Query Frame = 1


		  
Query: 16  IGGGAGAMMMQCVRFMSKKRAENLRKINPKVPYGEATSIAQNLFNLIQHRGPVTIGSAWT 75
           I GG G++    VR+MS+ RA N+RKINPKVP  EA SIA +L+++I+  GP+T+ + W 
Sbjct: 11  IKGGHGSIGSLLVRYMSRSRAVNVRKINPKVPIPEARSIATSLYDIIKDHGPLTVSNTWI 70

Query: 76  NAQEAGISGINSKTHMKILLKWMRGKRMLKQVCQQVGSNKKFLLCT-PQDSEAVQAAGTP 135
           +A+EAGI G+NSKTHMKI+LKWMRG+RMLK  C QVGS+KKFL CT P++ +  Q     
Sbjct: 71  HAKEAGIGGLNSKTHMKIMLKWMRGRRMLKLFCNQVGSSKKFLHCTLPEEPQTNQLESPS 130

Query: 136 RVKLRTEKSAKSRKK 150
            +KL+T+K ++ RKK
Sbjct: 131 ELKLQTKKPSQKRKK 145

[Close]

BLAST of Spo05084.1 vs. UniProtKB/TrEMBL
Match: A0A0D2Q258_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G262200 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 2.200e-32
Identity = 77/139 (55.40%), Postives = 101/139 (72.66%), Query Frame = 1


		  
Query: 16  IGGGAGAMMMQCVRFMSKKRAENLRKINPKVPYGEATSIAQNLFNLIQHRGPVTIGSAWT 75
           + GG G +    VR+MS+ RA N+RKINPKVP  EA SIA +L++LI+ RGP+T+ + WT
Sbjct: 11  VKGGNGGVGSLLVRYMSRTRAVNVRKINPKVPIPEAKSIASSLYDLIKQRGPLTVPNTWT 70

Query: 76  NAQEAGISGINSKTHMKILLKWMRGKRMLKQVCQQVGSNKKFLLCT-PQDSEAVQAAGTP 135
            AQEAGI G+NS+THMKI+LKWMRG+++LK  C  VGSNKKFL CT P++ +  Q    P
Sbjct: 71  LAQEAGIGGLNSRTHMKIMLKWMRGRKLLKLFCNHVGSNKKFLHCTLPEEPQTEQLESLP 130

Query: 136 RVKLRTEK--SAKSRKKHK 152
              L+T+K  SAK +KK K
Sbjct: 131 EPVLQTKKKPSAKRKKKTK 149

[Close]

BLAST of Spo05084.1 vs. TAIR (Arabidopsis)
Match: AT1G73940.1 (unknown protein)

HSP 1 Score: 126.3 bits (316), Expect = 1.600e-29
Identity = 64/125 (51.20%), Postives = 89/125 (71.20%), Query Frame = 1


		  
Query: 28  VRFMSKKRAENLRKINPKVPYGEATSIAQNLFNLIQHRGPVTIGSAWTNAQEAGISGINS 87
           VR+MS++RA N+RKINPKVP  EA +I+ +L++L +  GP+++ + W  AQEAG+SG+NS
Sbjct: 31  VRYMSRERAVNVRKINPKVPIQEAYAISNSLYDLFKLHGPLSVPNTWLRAQEAGVSGLNS 90

Query: 88  KTHMKILLKWMRGKRMLKQVCQQVGSNKKFL-LCTPQDSEAVQAAGTPRVKLRTEKSAKS 147
           KTHMK+LLKWMRGK+MLK +C QVGS+KKF     P+D    Q    P   +  +K A  
Sbjct: 91  KTHMKLLLKWMRGKKMLKLICNQVGSSKKFFHTVLPEDPLQEQ----PAAPIENKKQAVK 150

Query: 148 RKKHK 152
           +K+ K
Sbjct: 151 KKRSK 151

[Close]

BLAST of Spo05084.1 vs. TAIR (Arabidopsis)
Match: AT5G49410.1 (unknown protein)

HSP 1 Score: 77.8 bits (190), Expect = 6.400e-15
Identity = 33/93 (35.48%), Postives = 55/93 (59.14%), Query Frame = 1


		  
Query: 29  RFMSKKRAENLRKINPKVPYGEATSIAQNLFNLIQHRGPVTIGSAWTNAQEAGISGINSK 88
           R  + K    ++ I    P  +  +I + +F++++  GP+TI   W   +E G+ G+ SK
Sbjct: 22  RHFATKPKPKMKPIELNTPPEQTQTITRVIFDILKDHGPLTIAETWDRVKEVGLRGLTSK 81

Query: 89  THMKILLKWMRGKRMLKQVCQQVGSNKKFLLCT 122
            HMKI+L+WMR ++ LK +C  VG +K+FL  T
Sbjct: 82  RHMKIILRWMRERQKLKLICNHVGPHKQFLYTT 114

The following BLAST results are available for this feature:

BLAST of Spo05084.1 vs. NCBI nr
BLAST of Spo05084.1 vs. UniProtKB/TrEMBL
BLAST of Spo05084.1 vs. ExPASy Swiss-Prot
BLAST of Spo05084.1 vs. TAIR (Arabidopsis)

BLAST of Spo05084.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902169666\|gb\|KNA07689.1\|	2.7e-79	100.	hypothetical protein SOVF_1689...	[more]
gi\|731359654\|ref\|XP_010691396.1\|	6.3e-65	82.1	PREDICTED: uncharacterized pro...	[more]
gi\|728849575\|gb\|KHG29018.1\|	2.2e-33	54.5	hypothetical protein F383_1437...	[more]
gi\|590674833\|ref\|XP_007039277.1\|	1.4e-32	54.8	Tumor necrosis factor receptor...	[more]
gi\|823214298\|ref\|XP_012439900.1\|	3.2e-32	55.4	PREDICTED: uncharacterized pro...	[more]

BLAST of Spo05084.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9QKC4_SPIOL	1.8e-79	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8BIR0_BETVU	4.4e-65	82.1	Uncharacterized protein OS=Bet...	[more]
A0A0B0PRB6_GOSAR	1.5e-33	54.5	Uncharacterized protein OS=Gos...	[more]
A0A061G313_THECC	9.9e-33	54.8	Tumor necrosis factor receptor...	[more]
A0A0D2Q258_GOSRA	2.2e-32	55.4	Uncharacterized protein OS=Gos...	[more]

BLAST of Spo05084.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Spo05084.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2


Match Name	E-value	Identity	Description
AT1G73940.1	1.6e-29	51.2	unknown protein	[more]
AT5G49410.1	6.4e-15	35.4	unknown protein	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35110	FAMILY NOT NAMED	coord: 12..151 score: 7.0
None	No IPR available	PANTHER	PTHR35110:SF2	SUBFAMILY NOT NAMED	coord: 12..151 score: 7.0

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006364	rRNA processing