Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TGAAGTGGGAAACACATTAGATAAACAAATTCGAAATAGAATTATAAATTAAGCAATTCATAGTAAACTTGTACATTACTTGTCTCGCTTAATATGGTGAATACTAAAGGAGGTAACATACCAAAATTGATCATGACTACTTTTATCATGGCTGTCTTTTTTACGATGTTTTACGTGGCCAATGCTTCCGATCCTACACCTCTACAGGATTTTTGTGTAGGTGTTAATGATCCTAATTCTGCAGGTATAATATTAATTTTCTCGTTTACGTACTTTTTCTGTTTCTAAAAATATTACTTTGTATCATTTATCTATTTTCCTTTAAGTGACTCTGCTGTGCACCTAAAACTAGGTTCATCAAAGAATAATTTTTATCTTATTTAAAATAAAATAAAATTAGAATGAGCATAAGCTTTGGAGAATAGTTCTTTCTCTTCTCCTCTTGCTAGTTAGGCAAACACTACAAATCATTAAATAAGAGAAAGGCACGTTACTTATTGGTGCACCTAACGTAGAGCACAACTGTACAAGTAAACCCAATTGTACAGTAGATTTTGTACCTTTTAAACTATTTCATTTATTTTGATCATCGATATCTTGATTTGAGTATTAATTTTCTAAACAAATCATTAAGTGTATGTCTTAAATCCTAACACTTATAAAGCTTCATATTTTGACTACTATTCACCCAATAGTGCATTTACGTGCATGCTCCTCATTTCCTTCTTTGTTTTATTTTGTCTTATTCTTAACAATAGAGCATTTACGGTTTCACCCTTCCATTGCTATACAAAATGTATTGTTTTTTTTGTGTATAATTTCCTATATATTGTACCTTTGAACTATCAATTAAAACGCATATGGTTTCTATTTCCTGTTACATGTAAATTCAACATCTAACTTTAACATATCATTTCTATCATTTACCATAAATTGTAAGTTCCTAGCTTTTAAGTAATATTTTTACAAAAATAATTTTGTATACCTTGGGGGATCGTGCGCGCTAGCGCACGATCCAACAACCAGTATCTATATAAAAACAAATCAAATAAGATACTCACTAATGTTTTTGCTTATACTAAACCATTCGTTAATTGGTACTTAATATTTATTTTAAATGAATATTTTGCAGTGGTTGTTAATGGGAGGCTTTGCAAGAACCCAAATGACGTGACAGTAAATGATTTCTTGTATAAAAGGTTTAACATACCTGGAGACACAAACAACGCTCAGGGAGCAAATGCGACACTAGTCGACATAAACCAATTTCCAGGTGTCAACACACAAGGGGTGGCCATGGCTCGGGTAGACTTTGCACCCTATGGCCTAAATACCCCTCACTTGCATCCTCGTGGCTCGGAGATTTTTGCCGTGGTGGAGGGAACTATGTATGCTGGCTTTGTGACCTCCAGTTACAAGCTATATGACACGATACTTAAGAAGGGTGATGTTATTGTGTTCCCACAAAGTCTAATCCATTTCCAATTAAATCTTGGTAAGACAAACGCTTTGGCTTATGCCTCATTTGGGAGCCAAAATCCAGGGCGAGTCAATGTCGCTGATAGTGTGTTTGCGACTACCCCACGTATTCTAGACGATGTCCTTACCAAGGGGTTTCAGGTGGACGAGATGGTGATCGAGCAACTTCGCTCCCAATTCTCCGCAGAAAACATATCAGTCAACACCGGGAGATCGATCTTGAAACTTTTATCTCAAACTTAATTTCTGATTCTACATACTATAGCTAATAATGAACAAATGTATGGTCAAGAATCAAAATAGTACTACGCACTAGTGTATTTTATTTGCGATCCATATTTCTATATGAATAATGTATTTTAGTAGTTGTGGTTTATTTTCTATATTTTTAATTGATTGTAACGGTATTTGTAATAAATGAATTATACTCCCTCCGCCGTTATATTTGCACCGCTTTTCTTTTCGGGTCGTCCCTTATTACTTGCAC TGAAGTGGGAAACACATTAGATAAACAAATTCGAAATAGAATTATAAATTAAGCAATTCATAGTAAACTTGTACATTACTTGTCTCGCTTAATATGGTGAATACTAAAGGAGGTAACATACCAAAATTGATCATGACTACTTTTATCATGGCTGTCTTTTTTACGATGTTTTACGTGGCCAATGCTTCCGATCCTACACCTCTACAGGATTTTTGTGTAGGTGTTAATGATCCTAATTCTGCAGTGGTTGTTAATGGGAGGCTTTGCAAGAACCCAAATGACGTGACAGTAAATGATTTCTTGTATAAAAGGTTTAACATACCTGGAGACACAAACAACGCTCAGGGAGCAAATGCGACACTAGTCGACATAAACCAATTTCCAGGTGTCAACACACAAGGGGTGGCCATGGCTCGGGTAGACTTTGCACCCTATGGCCTAAATACCCCTCACTTGCATCCTCGTGGCTCGGAGATTTTTGCCGTGGTGGAGGGAACTATGTATGCTGGCTTTGTGACCTCCAGTTACAAGCTATATGACACGATACTTAAGAAGGGTGATGTTATTGTGTTCCCACAAAGTCTAATCCATTTCCAATTAAATCTTGGTAAGACAAACGCTTTGGCTTATGCCTCATTTGGGAGCCAAAATCCAGGGCGAGTCAATGTCGCTGATAGTGTGTTTGCGACTACCCCACGTATTCTAGACGATGTCCTTACCAAGGGGTTTCAGGTGGACGAGATGGTGATCGAGCAACTTCGCTCCCAATTCTCCGCAGAAAACATATCAGTCAACACCGGGAGATCGATCTTGAAACTTTTATCTCAAACTTAATTTCTGATTCTACATACTATAGCTAATAATGAACAAATGTATGGTCAAGAATCAAAATAGTACTACGCACTAGTGTATTTTATTTGCGATCCATATTTCTATATGAATAATGTATTTTAGTAGTTGTGGTTTATTTTCTATATTTTTAATTGATTGTAACGGTATTTGTAATAAATGAATTATACTCCCTCCGCCGTTATATTTGCACCGCTTTTCTTTTCGGGTCGTCCCTTATTACTTGCAC ATGGTGAATACTAAAGGAGGTAACATACCAAAATTGATCATGACTACTTTTATCATGGCTGTCTTTTTTACGATGTTTTACGTGGCCAATGCTTCCGATCCTACACCTCTACAGGATTTTTGTGTAGGTGTTAATGATCCTAATTCTGCAGTGGTTGTTAATGGGAGGCTTTGCAAGAACCCAAATGACGTGACAGTAAATGATTTCTTGTATAAAAGGTTTAACATACCTGGAGACACAAACAACGCTCAGGGAGCAAATGCGACACTAGTCGACATAAACCAATTTCCAGGTGTCAACACACAAGGGGTGGCCATGGCTCGGGTAGACTTTGCACCCTATGGCCTAAATACCCCTCACTTGCATCCTCGTGGCTCGGAGATTTTTGCCGTGGTGGAGGGAACTATGTATGCTGGCTTTGTGACCTCCAGTTACAAGCTATATGACACGATACTTAAGAAGGGTGATGTTATTGTGTTCCCACAAAGTCTAATCCATTTCCAATTAAATCTTGGTAAGACAAACGCTTTGGCTTATGCCTCATTTGGGAGCCAAAATCCAGGGCGAGTCAATGTCGCTGATAGTGTGTTTGCGACTACCCCACGTATTCTAGACGATGTCCTTACCAAGGGGTTTCAGGTGGACGAGATGGTGATCGAGCAACTTCGCTCCCAATTCTCCGCAGAAAACATATCAGTCAACACCGGGAGATCGATCTTGAAACTTTTATCTCAAACTTAA MVNTKGGNIPKLIMTTFIMAVFFTMFYVANASDPTPLQDFCVGVNDPNSAVVVNGRLCKNPNDVTVNDFLYKRFNIPGDTNNAQGANATLVDINQFPGVNTQGVAMARVDFAPYGLNTPHLHPRGSEIFAVVEGTMYAGFVTSSYKLYDTILKKGDVIVFPQSLIHFQLNLGKTNALAYASFGSQNPGRVNVADSVFATTPRILDDVLTKGFQVDEMVIEQLRSQFSAENISVNTGRSILKLLSQT Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Homology
BLAST of Spo05249.1 vs. NCBI nr
Match: gi|902212510|gb|KNA17005.1| (hypothetical protein SOVF_084030 [Spinacia oleracea]) HSP 1 Score: 466.8 bits (1200), Expect = 2.300e-128 Identity = 233/233 (100.00%), Postives = 233/233 (100.00%), Query Frame = 1
BLAST of Spo05249.1 vs. NCBI nr
Match: gi|902197677|gb|KNA13495.1| (hypothetical protein SOVF_116280 [Spinacia oleracea]) HSP 1 Score: 438.3 bits (1126), Expect = 8.600e-120 Identity = 218/233 (93.56%), Postives = 223/233 (95.71%), Query Frame = 1
BLAST of Spo05249.1 vs. NCBI nr
Match: gi|902206292|gb|KNA15425.1| (hypothetical protein SOVF_098350, partial [Spinacia oleracea]) HSP 1 Score: 392.1 bits (1006), Expect = 7.100e-106 Identity = 186/216 (86.11%), Postives = 201/216 (93.06%), Query Frame = 1
BLAST of Spo05249.1 vs. NCBI nr
Match: gi|731312085|ref|XP_010672543.1| (PREDICTED: putative germin-like protein 2-1 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 387.1 bits (993), Expect = 2.300e-104 Identity = 188/249 (75.50%), Postives = 217/249 (87.15%), Query Frame = 1
BLAST of Spo05249.1 vs. NCBI nr
Match: gi|731312093|ref|XP_010672571.1| (PREDICTED: putative germin-like protein 2-1 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 387.1 bits (993), Expect = 2.300e-104 Identity = 187/248 (75.40%), Postives = 217/248 (87.50%), Query Frame = 1
BLAST of Spo05249.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RC10_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_084030 PE=3 SV=1) HSP 1 Score: 466.8 bits (1200), Expect = 1.600e-128 Identity = 233/233 (100.00%), Postives = 233/233 (100.00%), Query Frame = 1
BLAST of Spo05249.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R1W1_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_116280 PE=3 SV=1) HSP 1 Score: 438.3 bits (1126), Expect = 6.000e-120 Identity = 218/233 (93.56%), Postives = 223/233 (95.71%), Query Frame = 1
BLAST of Spo05249.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R7E4_SPIOL (Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_098350 PE=3 SV=1) HSP 1 Score: 392.1 bits (1006), Expect = 4.900e-106 Identity = 186/216 (86.11%), Postives = 201/216 (93.06%), Query Frame = 1
BLAST of Spo05249.1 vs. UniProtKB/TrEMBL
Match: A0A0J8FYF9_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_1g006560 PE=3 SV=1) HSP 1 Score: 387.1 bits (993), Expect = 1.600e-104 Identity = 187/248 (75.40%), Postives = 217/248 (87.50%), Query Frame = 1
BLAST of Spo05249.1 vs. UniProtKB/TrEMBL
Match: A0A0J8D4C1_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_1g006520 PE=3 SV=1) HSP 1 Score: 387.1 bits (993), Expect = 1.600e-104 Identity = 188/249 (75.50%), Postives = 217/249 (87.15%), Query Frame = 1
BLAST of Spo05249.1 vs. ExPASy Swiss-Prot
Match: GL115_ARATH (Germin-like protein subfamily 1 member 15 OS=Arabidopsis thaliana GN=At5g39120 PE=2 SV=1) HSP 1 Score: 218.8 bits (556), Expect = 6.700e-56 Identity = 99/217 (45.62%), Postives = 145/217 (66.82%), Query Frame = 1
BLAST of Spo05249.1 vs. ExPASy Swiss-Prot
Match: GL116_ARATH (Germin-like protein subfamily 1 member 16 OS=Arabidopsis thaliana GN=At5g39130 PE=2 SV=1) HSP 1 Score: 218.0 bits (554), Expect = 1.100e-55 Identity = 99/212 (46.70%), Postives = 146/212 (68.87%), Query Frame = 1
BLAST of Spo05249.1 vs. ExPASy Swiss-Prot
Match: GL120_ARATH (Germin-like protein subfamily 1 member 20 OS=Arabidopsis thaliana GN=GLP5A PE=1 SV=1) HSP 1 Score: 216.5 bits (550), Expect = 3.300e-55 Identity = 98/212 (46.23%), Postives = 146/212 (68.87%), Query Frame = 1
BLAST of Spo05249.1 vs. ExPASy Swiss-Prot
Match: GL118_ARATH (Germin-like protein subfamily 1 member 18 OS=Arabidopsis thaliana GN=GLP2A PE=2 SV=2) HSP 1 Score: 215.7 bits (548), Expect = 5.700e-55 Identity = 98/212 (46.23%), Postives = 146/212 (68.87%), Query Frame = 1
BLAST of Spo05249.1 vs. ExPASy Swiss-Prot
Match: GL114_ARATH (Germin-like protein subfamily 1 member 14 OS=Arabidopsis thaliana GN=At5g39110 PE=3 SV=1) HSP 1 Score: 215.7 bits (548), Expect = 5.700e-55 Identity = 97/201 (48.26%), Postives = 137/201 (68.16%), Query Frame = 1
BLAST of Spo05249.1 vs. TAIR (Arabidopsis)
Match: AT5G39120.1 (RmlC-like cupins superfamily protein) HSP 1 Score: 218.8 bits (556), Expect = 3.800e-57 Identity = 99/217 (45.62%), Postives = 145/217 (66.82%), Query Frame = 1
BLAST of Spo05249.1 vs. TAIR (Arabidopsis)
Match: AT5G39130.1 (RmlC-like cupins superfamily protein) HSP 1 Score: 218.0 bits (554), Expect = 6.400e-57 Identity = 99/212 (46.70%), Postives = 146/212 (68.87%), Query Frame = 1
BLAST of Spo05249.1 vs. TAIR (Arabidopsis)
Match: AT5G39190.1 (germin-like protein 2) HSP 1 Score: 216.5 bits (550), Expect = 1.900e-56 Identity = 98/212 (46.23%), Postives = 146/212 (68.87%), Query Frame = 1
BLAST of Spo05249.1 vs. TAIR (Arabidopsis)
Match: AT5G39160.1 (RmlC-like cupins superfamily protein) HSP 1 Score: 215.7 bits (548), Expect = 3.200e-56 Identity = 98/212 (46.23%), Postives = 146/212 (68.87%), Query Frame = 1
BLAST of Spo05249.1 vs. TAIR (Arabidopsis)
Match: AT5G39110.1 (RmlC-like cupins superfamily protein) HSP 1 Score: 215.7 bits (548), Expect = 3.200e-56 Identity = 97/201 (48.26%), Postives = 137/201 (68.16%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo05249.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo05249.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo05249.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo05249.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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