Spo05296.1 (mRNA) | SpinachBase

Overview


Name	Spo05296.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	Photosystem II 11 kD protein
Location	chr6 : 14275051 .. 14276554 (-)
Sequence length	663

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGGCATTTTAATGGCATAACTAATGTAGGTACTTGAGAAATCCTGTGGTTTGTTGATTAGGATTAACTGTTGTAAATATGATACACAAGAATGAAGTACATGAGATGGGAGAGCTTAGATGTGAAATTGTAAACATATTCTTACCATTCTGTGTATGAAATGCAAAGCTTGTGTTAAAGCATTTTACGTGTTCATTTGGATGAAAGACAAAATTACTTTGGCAGGTACTCCCGCTACTCCGTACTTCCTTTCTGTGGGAACTGCAAAATGGCGTCGTGATTCAGTTGGCGGTAATTTTTTGATGCCTTCTTTTGGTTGTTCAGAGAGCTCAAGTTTCATACAAGGTTAGTCTCTTAAACTTTTATCTCACTAGGGTGGGTTGTATATTTATCCTTGATAGTGCAGTAGTGCACTCGATATAGTGTGCTTTGAATGAGATGGAGCAGTTCGTTCTACATATCAGAACTTTTAGATTTTGTATTATTGTTTGCTTGGTTTGCGTTACAAAAGAAATTAAGACAAGTCGAAGGCAAACCATTTCGATCATGAGATCTTTTTTTTTTTTTTCTTTATAAATTGGCAGTACTTTGGATCATTTTTCATAATAAATCCTTTTTTGTTTTCAAAAATTGAAATATGTGGGAGTTATTATGAGAAATTACCCAAAATCCAGAGTTACCCTTGAATAAGTGACCTTTTAGTTAATCTGGTTAGCCCTGTTTGAAAGGTAAGAGGTGAGTTTTGTGGTAAATGGGTGTTGTGTGTAGAAATTACAGGTGTCTGATTTTGGTTGGATTTCCATGTGACTTAAAAATCCAACATGTAAGTTTTGTCATCCATAAACACCAAATCTCAAAGATAAGACGATAAGGCCACGTAGCAGCAGAAGTGATTCTTAGGCTTTTTCTGCTAAGTTTGAGTATTATCTTAGTTTTCTCTCTCCCCCAAAGTTAGTTATACTGAGCCATACATAGATACCATGGCAAGTTGTAGTTTGATCACCCCTACTTCAAAGCTGAAACTCCTTTCAATCAAGTCCAAGCTCATCCCAACCACCACCTCGGCTGCCCCGTCAACATCTGCCCCTGCTGCTGCGAGTGCGTTTACCAGGCGACAGGTGAGCGTAACAGCTCTGACTGCTGCCATTCTCTCCCCTCTTCTGTCAAGCGCTGCTCATGCTGCCGCAGATGATGAATACGTGAAGGAAACAAAGGAGGTGATAAGCAAGGTTAGGAGTACACTGAATAAGAACAAAAGTGACCCAGATGTGGCTGATGCTGTAACAGAGCTTAGAGCTACTTCAAACTTCTGGGTTGCTAAGTATAGGAAAGAGAAAAATCTTCTTGGGAGGCCATCTTTCCGGGATATGTATTCTGCCCTCAATGCTGTATCCGGCCATTACATCAGTTTTGGCCCTACTTCTCCAATCCCTGCCAAGAGAAGAGCTAGGATCTTGGAGGAGATGGACAGTGTGGAGAAGGCTCTTCTTAGGGGAAAATGA

mRNA sequence

ATGCGGCATTTTAATGGCATAACTAATGTACTCCCGCTACTCCGTACTTCCTTTCTGTGGGAACTGCAAAATGGCGTCGTGATTCAGTTGGCGTTTTCTCTCTCCCCCAAAGTTAGTTATACTGAGCCATACATAGATACCATGGCAAGTTGTAGTTTGATCACCCCTACTTCAAAGCTGAAACTCCTTTCAATCAAGTCCAAGCTCATCCCAACCACCACCTCGGCTGCCCCGTCAACATCTGCCCCTGCTGCTGCGAGTGCGTTTACCAGGCGACAGGTGAGCGTAACAGCTCTGACTGCTGCCATTCTCTCCCCTCTTCTGTCAAGCGCTGCTCATGCTGCCGCAGATGATGAATACGTGAAGGAAACAAAGGAGGTGATAAGCAAGGTTAGGAGTACACTGAATAAGAACAAAAGTGACCCAGATGTGGCTGATGCTGTAACAGAGCTTAGAGCTACTTCAAACTTCTGGGTTGCTAAGTATAGGAAAGAGAAAAATCTTCTTGGGAGGCCATCTTTCCGGGATATGTATTCTGCCCTCAATGCTGTATCCGGCCATTACATCAGTTTTGGCCCTACTTCTCCAATCCCTGCCAAGAGAAGAGCTAGGATCTTGGAGGAGATGGACAGTGTGGAGAAGGCTCTTCTTAGGGGAAAATGA

Coding sequence (CDS)

ATGCGGCATTTTAATGGCATAACTAATGTACTCCCGCTACTCCGTACTTCCTTTCTGTGGGAACTGCAAAATGGCGTCGTGATTCAGTTGGCGTTTTCTCTCTCCCCCAAAGTTAGTTATACTGAGCCATACATAGATACCATGGCAAGTTGTAGTTTGATCACCCCTACTTCAAAGCTGAAACTCCTTTCAATCAAGTCCAAGCTCATCCCAACCACCACCTCGGCTGCCCCGTCAACATCTGCCCCTGCTGCTGCGAGTGCGTTTACCAGGCGACAGGTGAGCGTAACAGCTCTGACTGCTGCCATTCTCTCCCCTCTTCTGTCAAGCGCTGCTCATGCTGCCGCAGATGATGAATACGTGAAGGAAACAAAGGAGGTGATAAGCAAGGTTAGGAGTACACTGAATAAGAACAAAAGTGACCCAGATGTGGCTGATGCTGTAACAGAGCTTAGAGCTACTTCAAACTTCTGGGTTGCTAAGTATAGGAAAGAGAAAAATCTTCTTGGGAGGCCATCTTTCCGGGATATGTATTCTGCCCTCAATGCTGTATCCGGCCATTACATCAGTTTTGGCCCTACTTCTCCAATCCCTGCCAAGAGAAGAGCTAGGATCTTGGAGGAGATGGACAGTGTGGAGAAGGCTCTTCTTAGGGGAAAATGA

Protein sequence

MRHFNGITNVLPLLRTSFLWELQNGVVIQLAFSLSPKVSYTEPYIDTMASCSLITPTSKLKLLSIKSKLIPTTTSAAPSTSAPAAASAFTRRQVSVTALTAAILSPLLSSAAHAAADDEYVKETKEVISKVRSTLNKNKSDPDVADAVTELRATSNFWVAKYRKEKNLLGRPSFRDMYSALNAVSGHYISFGPTSPIPAKRRARILEEMDSVEKALLRGK

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo05296	Spo05296	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo05296.1	Spo05296.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo05296.1.CDS.3	Spo05296.1.CDS.3	CDS
Spo05296.1.CDS.2	Spo05296.1.CDS.2	CDS
Spo05296.1.CDS.1	Spo05296.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo05296.1.exon.3	Spo05296.1.exon.3	exon
Spo05296.1.exon.2	Spo05296.1.exon.2	exon
Spo05296.1.exon.1	Spo05296.1.exon.1	exon

Homology

[Close]

BLAST of Spo05296.1 vs. NCBI nr
Match: gi|902231995|gb|KNA22485.1| (hypothetical protein SOVF_033830 [Spinacia oleracea])

HSP 1 Score: 316.6 bits (810), Expect = 3.400e-83
Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 1


		  
Query: 48  MASCSLITPTSKLKLLSIKSKLIPTTTSAAPSTSAPAAASAFTRRQVSVTALTAAILSPL 107
           MASCSLITPTSKLKLLSIKSKLIPTTTSAAPSTSAPAAASAFTRRQVSVTALTAAILSPL
Sbjct: 1   MASCSLITPTSKLKLLSIKSKLIPTTTSAAPSTSAPAAASAFTRRQVSVTALTAAILSPL 60

Query: 108 LSSAAHAAADDEYVKETKEVISKVRSTLNKNKSDPDVADAVTELRATSNFWVAKYRKEKN 167
           LSSAAHAAADDEYVKETKEVISKVRSTLNKNKSDPDVADAVTELRATSNFWVAKYRKEKN
Sbjct: 61  LSSAAHAAADDEYVKETKEVISKVRSTLNKNKSDPDVADAVTELRATSNFWVAKYRKEKN 120

Query: 168 LLGRPSFRDMYSALNAVSGHYISFGPTSPIPAKRRARILEEMDSVEKALLRGK 221
           LLGRPSFRDMYSALNAVSGHYISFGPTSPIPAKRRARILEEMDSVEKALLRGK
Sbjct: 121 LLGRPSFRDMYSALNAVSGHYISFGPTSPIPAKRRARILEEMDSVEKALLRGK 173

[Close]

BLAST of Spo05296.1 vs. NCBI nr
Match: gi|731348794|ref|XP_010685668.1| (PREDICTED: photosystem II repair protein PSB27-H1, chloroplastic [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 238.8 bits (608), Expect = 8.900e-60
Identity = 131/176 (74.43%), Postives = 152/176 (86.36%), Query Frame = 1


		  
Query: 48  MASCSLITPTSKLKLLS---IKSKLIPTTTSAAPSTSAPAAASAFTRRQVSVTALTAAIL 107
           MA+ +LITPTSKLK LS   I+SKLI T  S   S +  A+ASA TRR +++TA+TAAIL
Sbjct: 1   MAASTLITPTSKLKPLSPTPIRSKLITTAASTNSSVAPSASASALTRRHLTITAVTAAIL 60

Query: 108 SPLLSSAAHAAADDEYVKETKEVISKVRSTLNKNKSDPDVADAVTELRATSNFWVAKYRK 167
           SP+L  AAHA+++DEYVKETKEVI+KVR+T+ K+K+DPDVADAV ELR TSN WVAKYR+
Sbjct: 61  SPILLPAAHASSEDEYVKETKEVITKVRTTITKDKNDPDVADAVAELRTTSNSWVAKYRR 120

Query: 168 EKNLLGRPSFRDMYSALNAVSGHYISFGPTSPIPAKRRARILEEMDSVEKALLRGK 221
           EK+LLGRPSFRDMYSALNAVSGHYISFGPTSPIPAKRR RILEEMDS EKALLRG+
Sbjct: 121 EKSLLGRPSFRDMYSALNAVSGHYISFGPTSPIPAKRRTRILEEMDSAEKALLRGR 176

[Close]

BLAST of Spo05296.1 vs. NCBI nr
Match: gi|297739253|emb|CBI28904.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 193.0 bits (489), Expect = 5.600e-46
Identity = 116/177 (65.54%), Postives = 138/177 (77.97%), Query Frame = 1


		  
Query: 47  TMASCSLITPTSKLK-LLSIKSKLIPTTTSAAPSTSAPAAASAFTRRQVSVTA--LTAAI 106
           +MAS +LITPT+K K L  IKSKL  TTT+AAP    P       R  ++VTA  L+ A+
Sbjct: 32  SMASPTLITPTTKPKPLFLIKSKLPTTTTNAAP----PPTPQPRRRELIAVTAGVLSHAL 91

Query: 107 LSPLLSSAAHAAADDEYVKETKEVISKVRSTLNKNKSDPDVADAVTELRATSNFWVAKYR 166
           L P+   A  AA D+EYVKET +VI+KVR+T+N +K+DPDVA AV +LR  SN WVAKYR
Sbjct: 92  LLPVAPQAV-AANDEEYVKETADVINKVRTTINMDKTDPDVATAVADLRDASNSWVAKYR 151

Query: 167 KEKNLLGRPSFRDMYSALNAVSGHYISFGPTSPIPAKRRARILEEMDSVEKALLRGK 221
           +EK LLGRPSFRDMYSALNAVSGHYISFGPT+PIPAKR+ARILEEMD+ EKALLRG+
Sbjct: 152 REKALLGRPSFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 203

[Close]

BLAST of Spo05296.1 vs. NCBI nr
Match: gi|225447221|ref|XP_002277789.1| (PREDICTED: photosystem II repair protein PSB27-H1, chloroplastic [Vitis vinifera])

HSP 1 Score: 192.6 bits (488), Expect = 7.400e-46
Identity = 116/176 (65.91%), Postives = 137/176 (77.84%), Query Frame = 1


		  
Query: 48  MASCSLITPTSKLK-LLSIKSKLIPTTTSAAPSTSAPAAASAFTRRQVSVTA--LTAAIL 107
           MAS +LITPT+K K L  IKSKL  TTT+AAP    P       R  ++VTA  L+ A+L
Sbjct: 1   MASPTLITPTTKPKPLFLIKSKLPTTTTNAAP----PPTPQPRRRELIAVTAGVLSHALL 60

Query: 108 SPLLSSAAHAAADDEYVKETKEVISKVRSTLNKNKSDPDVADAVTELRATSNFWVAKYRK 167
            P+   A  AA D+EYVKET +VI+KVR+T+N +K+DPDVA AV +LR  SN WVAKYR+
Sbjct: 61  LPVAPQAV-AANDEEYVKETADVINKVRTTINMDKTDPDVATAVADLRDASNSWVAKYRR 120

Query: 168 EKNLLGRPSFRDMYSALNAVSGHYISFGPTSPIPAKRRARILEEMDSVEKALLRGK 221
           EK LLGRPSFRDMYSALNAVSGHYISFGPT+PIPAKR+ARILEEMD+ EKALLRG+
Sbjct: 121 EKALLGRPSFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 171

[Close]

BLAST of Spo05296.1 vs. NCBI nr
Match: gi|590690545|ref|XP_007043537.1| (Photosystem II family protein [Theobroma cacao])

HSP 1 Score: 186.0 bits (471), Expect = 6.900e-44
Identity = 109/174 (62.64%), Postives = 131/174 (75.29%), Query Frame = 1


		  
Query: 48  MASCSLITPTSKLK-LLSIKSKLIPTTTSAAPSTSAPAAASAFTRRQVSVTALTAAILSP 107
           MAS +L+TPTSKLK LL IK+K         P    P      T    + T L+ A + P
Sbjct: 1   MASPTLLTPTSKLKPLLPIKAKAASAAQPHPPPQQQPLRRQFLTLAATTTTTLSLAGILP 60

Query: 108 LLSSAAHAAADDEYVKETKEVISKVRSTLNKNKSDPDVADAVTELRATSNFWVAKYRKEK 167
           +  +AA AA+D+EYVKET+ VI+KVRST+N +K+DP+VA AV ELR TSN WVAKYR+EK
Sbjct: 61  V--TAAFAASDEEYVKETEVVINKVRSTINMDKNDPNVAAAVAELRETSNSWVAKYRREK 120

Query: 168 NLLGRPSFRDMYSALNAVSGHYISFGPTSPIPAKRRARILEEMDSVEKALLRGK 221
            LLGR SFRD+YSALNAVSGHYISFGPT+PIPAKR+ARILEEMD+ EKALLRG+
Sbjct: 121 ALLGRASFRDIYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 172

[Close]

BLAST of Spo05296.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RSG4_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_033830 PE=3 SV=1)

HSP 1 Score: 316.6 bits (810), Expect = 2.400e-83
Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 1


		  
Query: 48  MASCSLITPTSKLKLLSIKSKLIPTTTSAAPSTSAPAAASAFTRRQVSVTALTAAILSPL 107
           MASCSLITPTSKLKLLSIKSKLIPTTTSAAPSTSAPAAASAFTRRQVSVTALTAAILSPL
Sbjct: 1   MASCSLITPTSKLKLLSIKSKLIPTTTSAAPSTSAPAAASAFTRRQVSVTALTAAILSPL 60

Query: 108 LSSAAHAAADDEYVKETKEVISKVRSTLNKNKSDPDVADAVTELRATSNFWVAKYRKEKN 167
           LSSAAHAAADDEYVKETKEVISKVRSTLNKNKSDPDVADAVTELRATSNFWVAKYRKEKN
Sbjct: 61  LSSAAHAAADDEYVKETKEVISKVRSTLNKNKSDPDVADAVTELRATSNFWVAKYRKEKN 120

Query: 168 LLGRPSFRDMYSALNAVSGHYISFGPTSPIPAKRRARILEEMDSVEKALLRGK 221
           LLGRPSFRDMYSALNAVSGHYISFGPTSPIPAKRRARILEEMDSVEKALLRGK
Sbjct: 121 LLGRPSFRDMYSALNAVSGHYISFGPTSPIPAKRRARILEEMDSVEKALLRGK 173

[Close]

BLAST of Spo05296.1 vs. UniProtKB/TrEMBL
Match: A0A0J8EQ99_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g173090 PE=3 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 6.200e-60
Identity = 131/176 (74.43%), Postives = 152/176 (86.36%), Query Frame = 1


		  
Query: 48  MASCSLITPTSKLKLLS---IKSKLIPTTTSAAPSTSAPAAASAFTRRQVSVTALTAAIL 107
           MA+ +LITPTSKLK LS   I+SKLI T  S   S +  A+ASA TRR +++TA+TAAIL
Sbjct: 1   MAASTLITPTSKLKPLSPTPIRSKLITTAASTNSSVAPSASASALTRRHLTITAVTAAIL 60

Query: 108 SPLLSSAAHAAADDEYVKETKEVISKVRSTLNKNKSDPDVADAVTELRATSNFWVAKYRK 167
           SP+L  AAHA+++DEYVKETKEVI+KVR+T+ K+K+DPDVADAV ELR TSN WVAKYR+
Sbjct: 61  SPILLPAAHASSEDEYVKETKEVITKVRTTITKDKNDPDVADAVAELRTTSNSWVAKYRR 120

Query: 168 EKNLLGRPSFRDMYSALNAVSGHYISFGPTSPIPAKRRARILEEMDSVEKALLRGK 221
           EK+LLGRPSFRDMYSALNAVSGHYISFGPTSPIPAKRR RILEEMDS EKALLRG+
Sbjct: 121 EKSLLGRPSFRDMYSALNAVSGHYISFGPTSPIPAKRRTRILEEMDSAEKALLRGR 176

[Close]

BLAST of Spo05296.1 vs. UniProtKB/TrEMBL
Match: F6HIG7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0059g01810 PE=3 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 3.900e-46
Identity = 116/177 (65.54%), Postives = 138/177 (77.97%), Query Frame = 1


		  
Query: 47  TMASCSLITPTSKLK-LLSIKSKLIPTTTSAAPSTSAPAAASAFTRRQVSVTA--LTAAI 106
           +MAS +LITPT+K K L  IKSKL  TTT+AAP    P       R  ++VTA  L+ A+
Sbjct: 36  SMASPTLITPTTKPKPLFLIKSKLPTTTTNAAP----PPTPQPRRRELIAVTAGVLSHAL 95

Query: 107 LSPLLSSAAHAAADDEYVKETKEVISKVRSTLNKNKSDPDVADAVTELRATSNFWVAKYR 166
           L P+   A  AA D+EYVKET +VI+KVR+T+N +K+DPDVA AV +LR  SN WVAKYR
Sbjct: 96  LLPVAPQAV-AANDEEYVKETADVINKVRTTINMDKTDPDVATAVADLRDASNSWVAKYR 155

Query: 167 KEKNLLGRPSFRDMYSALNAVSGHYISFGPTSPIPAKRRARILEEMDSVEKALLRGK 221
           +EK LLGRPSFRDMYSALNAVSGHYISFGPT+PIPAKR+ARILEEMD+ EKALLRG+
Sbjct: 156 REKALLGRPSFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 207

[Close]

BLAST of Spo05296.1 vs. UniProtKB/TrEMBL
Match: A0A061EAQ4_THECC (Photosystem II family protein OS=Theobroma cacao GN=TCM_008025 PE=3 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 4.800e-44
Identity = 109/174 (62.64%), Postives = 131/174 (75.29%), Query Frame = 1


		  
Query: 48  MASCSLITPTSKLK-LLSIKSKLIPTTTSAAPSTSAPAAASAFTRRQVSVTALTAAILSP 107
           MAS +L+TPTSKLK LL IK+K         P    P      T    + T L+ A + P
Sbjct: 1   MASPTLLTPTSKLKPLLPIKAKAASAAQPHPPPQQQPLRRQFLTLAATTTTTLSLAGILP 60

Query: 108 LLSSAAHAAADDEYVKETKEVISKVRSTLNKNKSDPDVADAVTELRATSNFWVAKYRKEK 167
           +  +AA AA+D+EYVKET+ VI+KVRST+N +K+DP+VA AV ELR TSN WVAKYR+EK
Sbjct: 61  V--TAAFAASDEEYVKETEVVINKVRSTINMDKNDPNVAAAVAELRETSNSWVAKYRREK 120

Query: 168 NLLGRPSFRDMYSALNAVSGHYISFGPTSPIPAKRRARILEEMDSVEKALLRGK 221
            LLGR SFRD+YSALNAVSGHYISFGPT+PIPAKR+ARILEEMD+ EKALLRG+
Sbjct: 121 ALLGRASFRDIYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 172

[Close]

BLAST of Spo05296.1 vs. UniProtKB/TrEMBL
Match: B9H851_POPTR (Photosystem 2 family protein OS=Populus trichocarpa GN=POPTR_0005s22780g PE=3 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 6.300e-44
Identity = 109/176 (61.93%), Postives = 135/176 (76.70%), Query Frame = 1


		  
Query: 48  MASCSLITPTSKLKLLS-IKSKLIPTTTSAAPSTSAPAAASAFTRRQVSVTALTAAILSP 107
           MAS +L+TPTS+LK LS IK K  PTT    P+       +   RR   ++  TA + SP
Sbjct: 1   MASPTLLTPTSRLKPLSPIKPKPTPTTAFPPPTPPQQQIRNHLLRRHF-LSLATAVLTSP 60

Query: 108 LLS--SAAHAAADDEYVKETKEVISKVRSTLNKNKSDPDVADAVTELRATSNFWVAKYRK 167
           L+   + A AA+D+EYVK+T+EVI KVR+T+N +KSDP+VADAV  LR TSN WVAKYR+
Sbjct: 61  LILPVTPAFAASDEEYVKDTEEVIGKVRTTMNMDKSDPNVADAVAVLRETSNSWVAKYRR 120

Query: 168 EKNLLGRPSFRDMYSALNAVSGHYISFGPTSPIPAKRRARILEEMDSVEKALLRGK 221
           EK LLGR SFRD+YSALNAV+GHYISFGPT+PIP+KR+ARILEEMD+ EKALLRG+
Sbjct: 121 EKALLGRASFRDIYSALNAVTGHYISFGPTAPIPSKRKARILEEMDTAEKALLRGR 175

[Close]

BLAST of Spo05296.1 vs. ExPASy Swiss-Prot
Match: PB27A_ARATH (Photosystem II repair protein PSB27-H1, chloroplastic OS=Arabidopsis thaliana GN=PSB27-1 PE=1 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 2.100e-37
Identity = 96/177 (54.24%), Postives = 118/177 (66.67%), Query Frame = 1


		  
Query: 48  MASCSLITPTSKLKLLSIKSKLIPTTTSAAPSTSAPAAASAFTRRQVSVTALTAAILSP- 107
           MAS S      K  L   K  +I ++ S       P   +   RR     A T+ +L+  
Sbjct: 1   MASASATATLLKPNLPPHKPTIIASSVSPP---LPPPRRNHLLRRDFLSLAATSTLLTQS 60

Query: 108 ---LLSSAAHAAADDEYVKETKEVISKVRSTLNKNKSDPDVADAVTELRATSNFWVAKYR 167
              L  +   AA D+EY+K+T  VISKVRSTL+  K+DP+VADAV ELR  SN WVAKYR
Sbjct: 61  IQFLAPAPVSAAEDEEYIKDTSAVISKVRSTLSMQKTDPNVADAVAELREASNSWVAKYR 120

Query: 168 KEKNLLGRPSFRDMYSALNAVSGHYISFGPTSPIPAKRRARILEEMDSVEKALLRGK 221
           KEK LLG+ SFRD+YSALNAVSGHY+SFGPT+PIPAKR+ARILEEM++ EKAL RG+
Sbjct: 121 KEKALLGKASFRDIYSALNAVSGHYVSFGPTAPIPAKRKARILEEMETAEKALTRGR 174

[Close]

BLAST of Spo05296.1 vs. ExPASy Swiss-Prot
Match: PSB27_THEEB (Photosystem II lipoprotein Psb27 OS=Thermosynechococcus elongatus (strain BP-1) GN=psb27 PE=1 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 5.500e-9
Identity = 41/117 (35.04%), Postives = 66/117 (56.41%), Query Frame = 1


		  
Query: 104 LSPLLSSAAHAAAD--DEYVKETKEVISKVRSTLNKNKSDPDVADAVTELRATSNFWVAK 163
           +S LL+S A+        + ++T  +IS +R  +   ++DP+   A  E R   N + A 
Sbjct: 15  VSLLLTSCANVPTGLTGNFREDTLALISSLREAIALPENDPNKKAAQAEARKKLNDFFAL 74

Query: 164 YRKEKNLLGRPSFRDMYSALNAVSGHYISFGPTSPIPAKRRARILEEMDSVEKALLR 219
           YR++ +L    SF  M +ALN+++GHY S+ P  P+P K +AR+ +E   VE AL R
Sbjct: 75  YRRDDSLRSLSSFMTMQTALNSLAGHYSSY-PNRPLPEKLKARLEQEFKQVELALDR 130

[Close]

BLAST of Spo05296.1 vs. ExPASy Swiss-Prot
Match: PSB27_SYNY3 (Photosystem II lipoprotein Psb27 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=psb27 PE=1 SV=2)

HSP 1 Score: 54.7 bits (130), Expect = 1.500e-6
Identity = 36/133 (27.07%), Postives = 70/133 (52.63%), Query Frame = 1


		  
Query: 88  AFTRRQVS-VTALTAAILSPLLSSAAHAAADDEYVKETKEVISKVRSTLNKNKSDPDVAD 147
           +F + Q+S + AL   +   L +  +       Y ++T  VI+ +R  ++  +  P+  +
Sbjct: 2   SFLKNQLSRLLALILVVAIGLTACDSGTGLTGNYSQDTLTVIATLREAIDLPQDAPNRQE 61

Query: 148 AVTELRATSNFWVAKYRKEKNLLGRPSFRDMYSALNAVSGHYISFGPTSPIPAKRRARIL 207
                R   N ++++YR++ +  G  SF  M +ALN+++G+Y S+G   PIP K + R+ 
Sbjct: 62  VQDTARGQINDYISRYRRKGDAGGLKSFTTMQTALNSLAGYYTSYG-ARPIPEKLKKRLQ 121

Query: 208 EEMDSVEKALLRG 220
            E    E+++ RG
Sbjct: 122 LEFTQAERSIERG 133

[Close]

BLAST of Spo05296.1 vs. TAIR (Arabidopsis)
Match: AT1G03600.1 (photosystem II family protein)

HSP 1 Score: 157.1 bits (396), Expect = 1.200e-38
Identity = 96/177 (54.24%), Postives = 118/177 (66.67%), Query Frame = 1


		  
Query: 48  MASCSLITPTSKLKLLSIKSKLIPTTTSAAPSTSAPAAASAFTRRQVSVTALTAAILSP- 107
           MAS S      K  L   K  +I ++ S       P   +   RR     A T+ +L+  
Sbjct: 1   MASASATATLLKPNLPPHKPTIIASSVSPP---LPPPRRNHLLRRDFLSLAATSTLLTQS 60

Query: 108 ---LLSSAAHAAADDEYVKETKEVISKVRSTLNKNKSDPDVADAVTELRATSNFWVAKYR 167
              L  +   AA D+EY+K+T  VISKVRSTL+  K+DP+VADAV ELR  SN WVAKYR
Sbjct: 61  IQFLAPAPVSAAEDEEYIKDTSAVISKVRSTLSMQKTDPNVADAVAELREASNSWVAKYR 120

Query: 168 KEKNLLGRPSFRDMYSALNAVSGHYISFGPTSPIPAKRRARILEEMDSVEKALLRGK 221
           KEK LLG+ SFRD+YSALNAVSGHY+SFGPT+PIPAKR+ARILEEM++ EKAL RG+
Sbjct: 121 KEKALLGKASFRDIYSALNAVSGHYVSFGPTAPIPAKRKARILEEMETAEKALTRGR 174

[Close]

BLAST of Spo05296.1 vs. TAIR (Arabidopsis)
Match: AT1G05385.1 (photosystem II 11 kDa protein-related)

HSP 1 Score: 48.5 bits (114), Expect = 6.000e-6
Identity = 26/101 (25.74%), Postives = 56/101 (55.45%), Query Frame = 1


		  
Query: 120 YVKETKEVISKVRSTLNKNKSDPDV----ADAVTELRATSNFWVAKYRKEKNLLGRPSFR 179
           Y+K  +EV+  +R +L +N  D       ADA  E   +   +++ +R +K + G  S+ 
Sbjct: 102 YLKSAREVVKTMRESLKENPKDNAKFRRSADAAKE---SIRDYLSNWRGQKTVAGEESYV 161

Query: 180 DMYSALNAVSGHYISFGPTSPIPAKRRARILEEMDSVEKAL 217
           ++ + + A++  Y   GP++P+P + +  IL++++  E+ L
Sbjct: 162 ELENVIRALAKFYSKAGPSAPLPDEVKTEILDDLNKAEEFL 199

The following BLAST results are available for this feature:

BLAST of Spo05296.1 vs. NCBI nr
BLAST of Spo05296.1 vs. UniProtKB/TrEMBL
BLAST of Spo05296.1 vs. ExPASy Swiss-Prot
BLAST of Spo05296.1 vs. TAIR (Arabidopsis)

BLAST of Spo05296.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902231995\|gb\|KNA22485.1\|	3.4e-83	100.	hypothetical protein SOVF_0338...	[more]
gi\|731348794\|ref\|XP_010685668.1\|	8.9e-60	74.4	PREDICTED: photosystem II repa...	[more]
gi\|297739253\|emb\|CBI28904.3\|	5.6e-46	65.5	unnamed protein product [Vitis...	[more]
gi\|225447221\|ref\|XP_002277789.1\|	7.4e-46	65.9	PREDICTED: photosystem II repa...	[more]
gi\|590690545\|ref\|XP_007043537.1\|	6.9e-44	62.6	Photosystem II family protein ...	[more]

BLAST of Spo05296.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9RSG4_SPIOL	2.4e-83	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8EQ99_BETVU	6.2e-60	74.4	Uncharacterized protein OS=Bet...	[more]
F6HIG7_VITVI	3.9e-46	65.5	Putative uncharacterized prote...	[more]
A0A061EAQ4_THECC	4.8e-44	62.6	Photosystem II family protein ...	[more]
B9H851_POPTR	6.3e-44	61.9	Photosystem 2 family protein O...	[more]

BLAST of Spo05296.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 3


Match Name	E-value	Identity	Description
PB27A_ARATH	2.1e-37	54.2	Photosystem II repair protein ...	[more]
PSB27_THEEB	5.5e-9	35.0	Photosystem II lipoprotein Psb...	[more]
PSB27_SYNY3	1.5e-6	27.0	Photosystem II lipoprotein Psb...	[more]

BLAST of Spo05296.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2


Match Name	E-value	Identity	Description
AT1G03600.1	1.2e-38	54.2	photosystem II family protein	[more]
AT1G05385.1	6.0e-6	25.7	photosystem II 11 kDa protein-...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025585	Photosystem II Pbs27	HAMAP	MF_01481	PSII_Psb27	coord: 91..216 score: 21
IPR025585	Photosystem II Pbs27	PFAM	PF13326	PSII_Pbs27	coord: 84..216 score: 6.1
None	No IPR available	PANTHER	PTHR34041	FAMILY NOT NAMED	coord: 7..220 score: 1.7
None	No IPR available	PANTHER	PTHR34041:SF1	PHOTOSYSTEM II REPAIR PROTEIN PSB27-H1, CHLOROPLASTIC	coord: 7..220 score: 1.7

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010207	photosystem II assembly
biological_process	GO:0010206	photosystem II repair
biological_process	GO:0009657	plastid organization
biological_process	GO:0035304	regulation of protein dephosphorylation
biological_process	GO:0006364	rRNA processing
cellular_component	GO:0009543	chloroplast thylakoid lumen
cellular_component	GO:0009535	chloroplast thylakoid membrane