Spo05306.1 (mRNA) | SpinachBase

Overview


Name	Spo05306.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	DNA-directed RNA polymerase II subunit
Location	chr6 : 14371804 .. 14379664 (+)
Sequence length	1900

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TATTGGAAACTTCCTACTACGTATAAACACAAGTAGGAGTAAGATTTATGGTAAACATTACAAAAAGGAGTAGTACTTTTCTCTCTCCTCACTTTATGTTCTGAGGCTCTCCCCAAATTCACTGCAGTCCTTAAAAACAACAATATTCCTTTCACCCTCCACTCCTCGACGCCGTAGACCACCTGCCGCCACTCTCCTCCGCCATCTCCGGCAAAGATGTTTTTCCATATTATACTGGAGAGGAACATGCAGCTTCACCCTCGCCATTTTGGCCCACGTCTCCGGGATAAACTCGTTTCTAAGCTCATGAAAGATGTTGAGGGAACCTGCAGGTTTGTTACTAATCAAAACCCTAATTTTTAAATTCAACTTTTTATTTATCCAATTACGCATTATAATTGAAATTAACTCAACTGCGTATTCTTGGGTTGCTCAATTTTTGATTTTTTAGCGGGCGCCATGGATTTGTGGTGGCAATCATGGGAATTGAGCATGTTGGCAAGGGGTTGATTAGAGATGGAACTGGGTTCGTCACTTTCCCTGTCAAGTATAAATGTGTTGTATTTCGGCCTTTTAAAGGCGAGATTCTTGAGGCTGTTGTTACCATGGTTAATAAGGTATTATATCCTTCTAAACCCCTTCGTTAAATTGAACCTCGGTTGATTAGTTTTTAACTTTTTCTTTGTGATTGTTGGAAATTGGCAGATGGGTTTCTTTGCTGAGGCTGGCCCTGTTCAGGTGTTTGTGTCTAATCATGTGAGTCTCCTTTGATTTTGTAGTTTCGGAGTTTATGCTTATGTGTTTGTAATAGCTTCAATTTTTGCATCTGTTTGATCTTAATTTGTGTGTTCAAAGAGATTTTAGATTGGTTTTAGTTACTTATGATTTGAATGCTTCCATCATATTGTAGCTGATACCGGATGATATGGAGTTCCAATCTGCTGATACACCAAATTATACAACTTCAGATAATTCAGTAGGTTCTCTTGAGTCCAAGATGTTCATTTAATTTTCAGTTTCATTGTGCGGAAGTTTGATATTTTTTTTGACAGGTCAAAATTCAAAAAGACAGTGAGGTGCGGCTCAAGATTATCGGGACTAGGGTGGATGCAACAGAAATTGTATGCCTTCCCTTTTTCTTTCATACTAAATTGCATATTCAGTTGTTATTTTGGTTTGCCACTTGCTGATATTTGGATGTATTTTCTCCGATTCATATCTACTGCTTGCACTGGTTTTTTTCTTAGGAAAATTGATTTTATTTATTTATTTATTTATTGATTTACTAGTGAGTTTGTTCTATGCTTGAATGAATTTTGCTTATTAAAAGTAAACTTCAATGGTTAAAAGGTGCTTTTTGCTGGAATTGATCTTCATAATTGGAAGAGAACAAAGGCTCCCTATTTTCTCTTAGCTGTTAATTGGAATTTTGGGGAAGTTGGAGTTGATTGGGGTTCCGGAATTATGGGGAAATGGAGTTGAATGGGCTTCTTAATTTTGGAGTTGAATGGGCTTCTTAATTTTGGAGTTGAATGGGGTTCCGGACTTAGTTTCCACACATCCTAATTGTCTGGAAATTGTGTTCCCTTGTTTATCCAACTCTATGTTTCAGTTTCTAATTTCTGATTCCATACAACATACTAATGTACTACCAAAATTTCACAGGCACCAAAATAAGATAAGTGCATCATGTAAATCAGGATAAAAGAACAACTAGATAGTTAAGGCCTCTATGCAATAAAGGGCTACAATTCTTATATTATGCAATAGACTTTCTTGAAAAGTTAACTCAGCAGCTGAAGTTTTAGATCTTAGTTTTAGAAACATCATAGCATTGATGCCATCAAAAGTGGACATCTGACAAGACGGAAAAGCGGGTAGAATTTGAAGCACAAATAGCTGTCTGTGTATAATATCTCAGATTATGAACTCGGTGAACAACATGTAGAAAACATCAAGCAACTTAAATCTCCCAGTGTGAGGCCACACCCACTGACCCACAGCCTCTTGATAAGCAGATGTCAGATTAGAATTTTCCTCAAAAAGCTTCTCTATCTCTGAAGATTGTGAATCAATCTGCAAAAACATAATCTAACTTGAGCGAAGGGGAAGAAAATAATATTGCATTTAGGAAAAAGAAGAGGATAGGGGTAAAAGAAGGATTATGTTCTATATTAATAAGGCAAGAAAGCTTTCCAGCCAAAAATAACGAGGCAAGAGAGGTTACCTCTAGCAGAATCTTCTGCCTCTCCCTTCTGATCTCTCAAGGTAATGATCCTCGAATTTCTCCTTGTCTTGCTACAAGATTTCGAAAAAGTAACAAACTGTGTAAATTAGTGATCAACATTTCAGCAGCATTTGAAAGAGCATATTCATCTAGAAGGGATTTCACTGAAGCAAAGAAAGAGAAGTCCACAGAGATGTGTTGACTGAACCATTAAACTAGTAGTATGTACATGACTCTTTTGATCCCGTGTATCAATTCCATGTCAAATTATTACACGGTTTAATTCTTTAGTCAAAACTGGAATAAAATTCCAAGACTTGACTAATTTTTCATTTCAAATCCATTTTTAGAGTCTGCTGAAAGATCCTGCCTTAAAGGAATGACTAAGCTTTAACTCAATATGTTAACCTGAAAAGTGAAATATAATGTACAGCAATCACAGATTGCTTTGTACACACAAATACAAGGAAAAATGTGTTGGGAATCAATATGAAGAGGAATCTGGCTGACCAAGGTATATGTCTTCGATGATGTTTTCTCTGCAGCATCTTCTGCAACAAATACAAACAAAAATATTAAGAAAACAAGTTCACTAGATGATGTCAGAAATAATTTAAAAAAGGAATCTGTAGATCCCTAGCTCCCAATTAAAACTTGGATACAAAACCATTGACTGCTCCCATTGAAAGAAAAAAGAAAGGTCCCTGTCAAGCTTTTCCCAAATTACCAACATTCATAAATTGATGGAAACATGGCAACAAGTCATTAAAGGGGCGTTTGGTTCAATTGGGGTAAAGGGAATGAAGTCAACAAAGGGAATGGAAGGGAAAAGAAATAAAAACCCTTTGGTATCTACTGCTTGCACTGGTTTTTCCTTAGGAAAATTGATTTTATTTATTTATTGATTTACTAGTGAGTTAGTTGTATGCTTGAATGAATTTTGCTTATAGAAAGTAAACTTCATGGTTAAAAAGGTGGTTTTTGCTGGAATTGATCTTCATAACTGGAAGAGAACAAAGGCTCCCTATTTTCTCTTGGCTGTTAATTGGAATTTTGGGGCAGTTGGAGTTGGATGGGGTTCCGGAATTATGGGGAAATGGAATTGAATGGGCTTCTTAATTTTGAAGGGATTCAGTAAAGATATTTTAGAGATATCAAGGACAATAATGAGTCTCTTTGTTCATTCAGTGTTGTTGTTTTCTTCATTTTAGAGCTGTAAATATGTTAATTTACATGTTTCAGAGGTTGTTGATTGAACTAGGGGAAATGGGCCCCGAGGAGGTGTGAATATTGGCTCTTAATATGTGATGTTTGAAGTAATTTGGCTCTTAATATGTTAATATGTGATATATGGCTGTATTTTCTCCGATTGGTATCTACTAGTGAGTTTGTTGTATGCTTGAATGAATTTTGCATATTGAAAGTACACTTCATGGTTAAAAAGGTGCTTTTTGCTGGAATGGATTTTCATAATTGGAAGAGAACAAAGGCTCCCTATTTTGTTTGATGTTGATTGATGCTGTTACTGTTAGATTCAATTCTCAGAATTTAAATCTATCTAAAGTTTTGCCCTTTTGATGGAGACAATGGTGTATTTGCAACTTATTAGCTATTACGGATACTTTAATAGAGTAACTTTGCAAGTCCAATTTTGTATTTGTTTATCTTTTTTGTGTTTGTTGATGAGCTTGCTTATTCTGACTATGGTTCTTCTGTGATTATTGAGTGATGATGATTGTGATACTATTATGCCTAAATTGTAGCATTTATGGTTTATGGGTAGCGAATGCGTATATCGTGAAAGTGTGGTACCTATTGTTCAAATATTTGGTAGATTTAGCAAAGAAATGATCGGCATTGAGATGGTCACTTGGGATTTAGCATTTAGAATGAGTTGATTTGGGTCCTGTACTCCTTGTTGCTTCCTGATTGTATGGCTTATCATACCCGTGTTTGTTATTTAGCTTTGAAATTGGCAAACTGAGATAACTGTTGAATAATTTAGTTGCTGCCACTAGTTAGAGAATGATTTGCAATTAAGCATTGCCTTCCCCTAGCCTGAGTATTTCACTTGGGTATCTGATTCTGCAGCTCCATTAGTCTTTGATAAGGGGGNGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTTGAGTATATTTGGGGCACAAAGTACTACGCTGTATCTGTTTTCATTGTAGTTTGTTGTTGTGTAGTGATATAAGAATGAAATTGCCTAGGAAAACCGCAGGAGTAGCACATTAATTTTGCAGAAAATGTGAATAAATAACTTTCAGGTTGGAAGAGTTTTGCGCTCCATCGGATTCTGATCATTTATGGATCACCTAATTTTTGTTTTGTGGTGACTTTGATGGTTCCTTCTCTATGGCTGTTAAGCTTACTGTTTAGTAGAAGCAGTGCAGTGACCGTTAACTGGAAATGATTGCGGGAATCATATTCAATTGCATCTATTCATGCTCGTGGATATGTTGTGTTTATGTTCTGTATCCACAAAGATTCTGGTTTCACTAAAATGAATAACAGTAAGTAGTTTGTTGTTTGTTTTGTACCTGGATTTGCTCTCATTTTAAAAGGAAATTTGCCATTATTAGGAAATAACCGGGGAAGAATATCTCTGCAGGAATCACGCCTGTGTCAAAATACCAACAATATATGCTACTAGCATGGTTCATCTCCTTCTGTATGCCTCTAGGAGGGGTTAGGATAAAAGAGAGGACTTGGGGAAAGGGGGGGTTGGATGGCGAATAGAATGGAGACGTGCGCAGCATTATATTCTGATTGATGATAACCTCATTGTGTTTGCTTGCAATAAGTACTACGTATTTAGTCTCCTTATGTTGGGTGGTTTATACAATTGCTTGTGTTGTTGAATCGTGGTTGGTTTCTCGTATACTCATGTCTATCGTATGATTGAGTTGTTGCAATAACTTGAAAAGCTTAAACATTAAATTAACGGGTTTTTCATGAAATGCCCTTCAAGGTTTCATCTAATGACCAAATACCCACTAAAATAGACAAATTATGCCTTATTTTTCTAGAAATTTTTCAAATACCCTAATTTTTAACGGAAAGTTAATGCCGTTAGTTTTAATGGTAAATAAACAGAATTAACCTTTTCAACCTCCAATTAATTTAAACTAATACTTGCGGATACTTCAGGAATGATCAGCTCTATCAGTTTAAGCTTTGTATCGTATGGTGAAATCCTTATTTGTAGTTCTCCTGTTACATGCTCATGCTCCCTCCGTATCTTTTTAAGAGATGAACATTCCTTATTCGGCCGTATTTTTATTAAGAGATACACTTTCTATTTTTGGCATGTCATTGTCCCCACCTCCAATTATACTAATCTTTTTTTCCCTAACTCAATACTCTACTTTCATCTTATTATAATAAATTCAACTCTGCCTTCTAAAACTATGTGCCGGTCAAAGTGTATCTCTTAAAAAGACACGGAGGCATTATTTTGAATCAATATCATCTTTTTGAAGTGTATTGGAAGCATAGTTGTTTATGTTTATTGGGATTGTGGTGTACTCTTTGAGAGAACCGAGTTTCAGTCACCTTTTAAGTCATTGATGTAATTGATTGATTATTAAGATTTGTTGACAACACTCATCACAAATGACATAGAAACTTTCCAATAGCTGAAATTTGAATACAGTGCCACCGAGTGTTTCCACATTTAGAGATTTTCTTCTGAGTTTTCATATGACGTGGAATGTTAAACAGTCATATGACTCATAAAGTGAGTTAGGTTTGAAGTTTGGACTACTTTGATTTAGATTGAAAGAGTGTTGGCTATTGATCTAGAATCACCATCATTCGTGATATTGTCAATTGCATTGAAATGTAGAACTTTCTGGAAGTTGTAGGTAACAATGTGATAGTCATCCAAATGTGTGCTCTAATATAGTAAGTGATATTGTATGATGAGTTTATTTGAGTTCCTTTTTTTTTTTTCCTGGGGTTAACTGATTTTTTTTTTTCTTGCAGTTCTGCATAGGAACGATAANTTTTTTTTTTTTCCTGGGGTTAACTGATTTTTTTTTTTCTTGCAGTTCTGCATAGGAACGATAAAAGACGATTTTCTGGGCGTCATAAGTGACCCCGGTGCAGCTTCATGAGCTCCATTGTACTTGATATAGCTGATAACCCATTTTGTGTAGAAAATTTCTGGAACTAAATCCTCGGAGTTGTATTTTGACTTTTGAATAACCATTTAGTGGTTTGGATATAAATGCTCCTAACTTACCATATTAACACTGTTTGTATGAAACGGGAAAATTTGGTGTTAAAGTTTAATGCCTCGTGTTATTAAAGTTTAGTTAATTGAGAAGTGCATTACAAATCCCTCTATTAAAGTTTAATAAAGCGTGTCTCAAGTGCTCTTGATTAATGTTGTTTTACATAATATCTGTGATATTAAGGATATTTGAGCTTGTTGATCAAACTCAACCCATGGTTTAAGCTTTTGTATATTGTTGATAACTGCAGGTTGCAGGCATGAAAGAATATTTAAACATAATCTTTCAGTTGTGTTATATAATTTATTTTGTGTGTTATAATTTGTTGGATATAGGTCGTTGATTGAGGAGAACCAATTGGCTTGAAACATTTTAGAGCGGGTGACACTGGAAGGTCCCTATATTCATGTTTGGTAGTTTTGCAGATAACTGACTACTGCCTTGTGCCTTGTCAGGGAGCTATTTCTACTTCTGGATAGATAGCCAACAAAGGTCCTGACTCCTGACTCCTGACTCCTCAAGGAAGATGCAGTGAGGTTAATTTCTAGTGTTATCTCTTCCGCAAATTTATATTAGGCCATGACTGATTTTACAGCCAAAGTCACTAAGTCATTTGAAAATGCTGTATATTAATAGACCAAATCCTCCTTGTATTTTCTTAAGTAAAATATCCTGCAAATTTTTGTATATTTAATGTACCATTTGGTTTACTTTCCGACATACTTAAATATGACATTGTTGTCTGACTACTGTTTACAGTTGCTGCTTCCAGAGATCAACGAAAAGAAAAGGCAACACAAGACTCAACAAAATCCTATATTTTTTGCTTAGCCTAATGTGTCGTAATCCAACCTTCCTTTACTTGTATTTTGCTTATTTATTATTTTCTAGGATGTTTCTAATAGTTTTTTAGGCTTTAGATAGAATTATTATGTTGACTTAGTGTTCACTGTTAGTTTGTAGCTAATTTAAAATAAACCTCTATGAGGGTATGAATAAATGAATTCCTACTTCTCACATTTTGTTGCCATCGCTTTATTACTTGTGTTTTGTTGTCGGCCTTTAATAGATATTGTGCCGCCATTCGCTCTAAGCAACCCAAATCCCATAAAATCCCGCAATCAGATAAATTCTCGTCGACGGTCCCGCTTATGTTTGCTGTGTGCAAACAAGCGCCCCGATCGACCCTTGCCTCTCACTCTTGTCGCCAATAGGCAAGAGCGTTCATCCGGAATCAAGTGCTTGCTCGTGCC

mRNA sequence

TATTGGAAACTTCCTACTACGTATAAACACAAGTAGGAGTAAGATTTATGGTAAACATTACAAAAAGGAGTAGTACTTTTCTCTCTCCTCACTTTATGTTCTGAGGCTCTCCCCAAATTCACTGCAGTCCTTAAAAACAACAATATTCCTTTCACCCTCCACTCCTCGACGCCGTAGACCACCTGCCGCCACTCTCCTCCGCCATCTCCGGCAAAGATGTTTTTCCATATTATACTGGAGAGGAACATGCAGCTTCACCCTCGCCATTTTGGCCCACGTCTCCGGGATAAACTCGTTTCTAAGCTCATGAAAGATGTTGAGGGAACCTGCAGCGGGCGCCATGGATTTGTGGTGGCAATCATGGGAATTGAGCATGTTGGCAAGGGGTTGATTAGAGATGGAACTGGGTTCGTCACTTTCCCTGTCAAGTATAAATGTGTTGTATTTCGGCCTTTTAAAGGCGAGATTCTTGAGGCTGTTGTTACCATGGTTAATAAGATGGGTTTCTTTGCTGAGGCTGGCCCTGTTCAGGTGTTTGTGTCTAATCATCTGATACCGGATGATATGGAGTTCCAATCTGCTGATACACCAAATTATACAACTTCAGATAATTCAGTCAAAATTCAAAAAGACAGTGAGGTGCGGCTCAAGATTATCGGGACTAGGGTGGATGCAACAGAAATTTTCTGCATAGGAACGATAAAAGACGATTTTCTGGGCGTCATAAGTGACCCCGGTGCAGCTTCATGAGCTCCATTGTACTTGATATAGCTGATAACCCATTTTGTGTAGAAAATTTCTGGAACTAAATCCTCGGAGTTGTATTTTGACTTTTGAATAACCATTTAGTGGTTTGGATATAAATGCTCCTAACTTACCATATTAACACTGTTTGTATGAAACGGGAAAATTTGGTGTTAAAGTTTAATGCCTCGTGTTATTAAAGTTTAGTTAATTGAGAAGTGCATTACAAATCCCTCTATTAAAGTTTAATAAAGCGTGTCTCAAGTGCTCTTGATTAATGTTGTTTTACATAATATCTGTGATATTAAGGATATTTGAGCTTGTTGATCAAACTCAACCCATGGTTTAAGCTTTTGTATATTGTTGATAACTGCAGGTTGCAGGCATGAAAGAATATTTAAACATAATCTTTCAGTTGTGTTATATAATTTATTTTGTGTGTTATAATTTGTTGGATATAGGTCGTTGATTGAGGAGAACCAATTGGCTTGAAACATTTTAGAGCGGGTGACACTGGAAGGTCCCTATATTCATGTTTGGTAGTTTTGCAGATAACTGACTACTGCCTTGTGCCTTGTCAGGGAGCTATTTCTACTTCTGGATAGATAGCCAACAAAGGTCCTGACTCCTGACTCCTGACTCCTCAAGGAAGATGCAGTGAGTTGCTGCTTCCAGAGATCAACGAAAAGAAAAGGCAACACAAGACTCAACAAAATCCTATATTTTTTGCTTAGCCTAATGTGTCGTAATCCAACCTTCCTTTACTTGTATTTTGCTTATTTATTATTTTCTAGGATGTTTCTAATAGTTTTTTAGGCTTTAGATAGAATTATTATGTTGACTTAGTGTTCACTGTTAGTTTGTAGCTAATTTAAAATAAACCTCTATGAGGGTATGAATAAATGAATTCCTACTTCTCACATTTTGTTGCCATCGCTTTATTACTTGTGTTTTGTTGTCGGCCTTTAATAGATATTGTGCCGCCATTCGCTCTAAGCAACCCAAATCCCATAAAATCCCGCAATCAGATAAATTCTCGTCGACGGTCCCGCTTATGTTTGCTGTGTGCAAACAAGCGCCCCGATCGACCCTTGCCTCTCACTCTTGTCGCCAATAGGCAAGAGCGTTCATCCGGAATCAAGTGCTTGCTCGTGCC

Coding sequence (CDS)

ATGTTTTTCCATATTATACTGGAGAGGAACATGCAGCTTCACCCTCGCCATTTTGGCCCACGTCTCCGGGATAAACTCGTTTCTAAGCTCATGAAAGATGTTGAGGGAACCTGCAGCGGGCGCCATGGATTTGTGGTGGCAATCATGGGAATTGAGCATGTTGGCAAGGGGTTGATTAGAGATGGAACTGGGTTCGTCACTTTCCCTGTCAAGTATAAATGTGTTGTATTTCGGCCTTTTAAAGGCGAGATTCTTGAGGCTGTTGTTACCATGGTTAATAAGATGGGTTTCTTTGCTGAGGCTGGCCCTGTTCAGGTGTTTGTGTCTAATCATCTGATACCGGATGATATGGAGTTCCAATCTGCTGATACACCAAATTATACAACTTCAGATAATTCAGTCAAAATTCAAAAAGACAGTGAGGTGCGGCTCAAGATTATCGGGACTAGGGTGGATGCAACAGAAATTTTCTGCATAGGAACGATAAAAGACGATTTTCTGGGCGTCATAAGTGACCCCGGTGCAGCTTCATGA

Protein sequence

MFFHIILERNMQLHPRHFGPRLRDKLVSKLMKDVEGTCSGRHGFVVAIMGIEHVGKGLIRDGTGFVTFPVKYKCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQVFVSNHLIPDDMEFQSADTPNYTTSDNSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVISDPGAAS

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo05306	Spo05306	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo05306.1	Spo05306.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo05306.1.exon.1	Spo05306.1.exon.1	exon
Spo05306.1.exon.2	Spo05306.1.exon.2	exon
Spo05306.1.exon.3	Spo05306.1.exon.3	exon
Spo05306.1.exon.4	Spo05306.1.exon.4	exon
Spo05306.1.exon.5	Spo05306.1.exon.5	exon
Spo05306.1.exon.6	Spo05306.1.exon.6	exon
Spo05306.1.exon.7	Spo05306.1.exon.7	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo05306.1.utr5p.1	Spo05306.1.utr5p.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo05306.1.CDS.1	Spo05306.1.CDS.1	CDS
Spo05306.1.CDS.2	Spo05306.1.CDS.2	CDS
Spo05306.1.CDS.3	Spo05306.1.CDS.3	CDS
Spo05306.1.CDS.4	Spo05306.1.CDS.4	CDS
Spo05306.1.CDS.5	Spo05306.1.CDS.5	CDS
Spo05306.1.CDS.6	Spo05306.1.CDS.6	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo05306.1.utr3p.1	Spo05306.1.utr3p.1	three_prime_UTR
Spo05306.1.utr3p.2	Spo05306.1.utr3p.2	three_prime_UTR

Homology

[Close]

BLAST of Spo05306.1 vs. NCBI nr
Match: gi|902165457|gb|KNA07108.1| (hypothetical protein SOVF_174890 [Spinacia oleracea])

HSP 1 Score: 360.1 bits (923), Expect = 2.100e-96
Identity = 177/177 (100.00%), Postives = 177/177 (100.00%), Query Frame = 1


		  
Query: 1   MFFHIILERNMQLHPRHFGPRLRDKLVSKLMKDVEGTCSGRHGFVVAIMGIEHVGKGLIR 60
           MFFHIILERNMQLHPRHFGPRLRDKLVSKLMKDVEGTCSGRHGFVVAIMGIEHVGKGLIR
Sbjct: 1   MFFHIILERNMQLHPRHFGPRLRDKLVSKLMKDVEGTCSGRHGFVVAIMGIEHVGKGLIR 60

Query: 61  DGTGFVTFPVKYKCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQVFVSNHLIPDDMEFQ 120
           DGTGFVTFPVKYKCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQVFVSNHLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYKCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQVFVSNHLIPDDMEFQ 120

Query: 121 SADTPNYTTSDNSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVISDPGAAS 178
           SADTPNYTTSDNSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVISDPGAAS
Sbjct: 121 SADTPNYTTSDNSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVISDPGAAS 177

[Close]

BLAST of Spo05306.1 vs. NCBI nr
Match: gi|731348804|ref|XP_010685673.1| (PREDICTED: DNA-directed RNA polymerase II subunit RPB7 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 351.3 bits (900), Expect = 1.000e-93
Identity = 172/176 (97.73%), Postives = 173/176 (98.30%), Query Frame = 1


		  
Query: 1   MFFHIILERNMQLHPRHFGPRLRDKLVSKLMKDVEGTCSGRHGFVVAIMGIEHVGKGLIR 60
           MFFHIILERNMQLHPRHFG RLRDKL+SKLMKDVEGTCSGRHGFVVAIMGIEHVGKGLIR
Sbjct: 1   MFFHIILERNMQLHPRHFGSRLRDKLISKLMKDVEGTCSGRHGFVVAIMGIEHVGKGLIR 60

Query: 61  DGTGFVTFPVKYKCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQVFVSNHLIPDDMEFQ 120
           DGTGFVTFPVKYKCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQVFVSNHLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYKCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQVFVSNHLIPDDMEFQ 120

Query: 121 SADTPNYTTSDNSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVISDPGAA 177
           SADTPNYTTSD SVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVISDPG A
Sbjct: 121 SADTPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVISDPGTA 176

[Close]

BLAST of Spo05306.1 vs. NCBI nr
Match: gi|720082113|ref|XP_010242492.1| (PREDICTED: DNA-directed RNA polymerase II subunit RPB7 [Nelumbo nucifera])

HSP 1 Score: 339.3 bits (869), Expect = 3.900e-90
Identity = 162/177 (91.53%), Postives = 172/177 (97.18%), Query Frame = 1


		  
Query: 1   MFFHIILERNMQLHPRHFGPRLRDKLVSKLMKDVEGTCSGRHGFVVAIMGIEHVGKGLIR 60
           MFFHI+LERNMQLHPRHFGP LRDKLV+KLMKDVEGTCSGRHGFVVAI G++++GKGLIR
Sbjct: 1   MFFHIVLERNMQLHPRHFGPNLRDKLVAKLMKDVEGTCSGRHGFVVAITGVDNIGKGLIR 60

Query: 61  DGTGFVTFPVKYKCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQVFVSNHLIPDDMEFQ 120
           DGTGFVTFPVKY+CVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQ+FVSNHLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 121 SADTPNYTTSDNSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVISDPGAAS 178
           S D PNYTTSD SVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVI+DPGAA+
Sbjct: 121 SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPGAAA 177

[Close]

BLAST of Spo05306.1 vs. NCBI nr
Match: gi|1002270760|ref|XP_015639700.1| (PREDICTED: DNA-directed RNA polymerase II subunit RPB7 [Oryza sativa Japonica Group])

HSP 1 Score: 338.2 bits (866), Expect = 8.700e-90
Identity = 163/176 (92.61%), Postives = 170/176 (96.59%), Query Frame = 1


		  
Query: 1   MFFHIILERNMQLHPRHFGPRLRDKLVSKLMKDVEGTCSGRHGFVVAIMGIEHVGKGLIR 60
           MFFHI+LERNMQLHPRHFGP LRDKLVSKL+KDVEGTCSGRHGFVVAI G+E VGKGLIR
Sbjct: 1   MFFHIVLERNMQLHPRHFGPHLRDKLVSKLIKDVEGTCSGRHGFVVAITGVEDVGKGLIR 60

Query: 61  DGTGFVTFPVKYKCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQVFVSNHLIPDDMEFQ 120
           +GTG+VTFPVKY+CVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQ+FVSNHLIPDDMEFQ
Sbjct: 61  EGTGYVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 121 SADTPNYTTSDNSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVISDPGAA 177
           S D PNYTTSD SVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVISDPGAA
Sbjct: 121 SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVISDPGAA 176

[Close]

BLAST of Spo05306.1 vs. NCBI nr
Match: gi|1002857365|ref|XP_006654370.2| (PREDICTED: DNA-directed RNA polymerase II subunit RPB7 [Oryza brachyantha])

HSP 1 Score: 337.8 bits (865), Expect = 1.100e-89
Identity = 162/176 (92.05%), Postives = 170/176 (96.59%), Query Frame = 1


		  
Query: 1   MFFHIILERNMQLHPRHFGPRLRDKLVSKLMKDVEGTCSGRHGFVVAIMGIEHVGKGLIR 60
           MFFHI+LERNMQLHPRHFGP LRDKLVSKL+KDVEGTCSGRHGFVVAI G+E +GKGLIR
Sbjct: 53  MFFHIVLERNMQLHPRHFGPHLRDKLVSKLIKDVEGTCSGRHGFVVAITGVEDIGKGLIR 112

Query: 61  DGTGFVTFPVKYKCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQVFVSNHLIPDDMEFQ 120
           +GTG+VTFPVKY+CVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQ+FVSNHLIPDDMEFQ
Sbjct: 113 EGTGYVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 172

Query: 121 SADTPNYTTSDNSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVISDPGAA 177
           S D PNYTTSD SVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVISDPGAA
Sbjct: 173 SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVISDPGAA 228

[Close]

BLAST of Spo05306.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QK90_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_174890 PE=4 SV=1)

HSP 1 Score: 360.1 bits (923), Expect = 1.500e-96
Identity = 177/177 (100.00%), Postives = 177/177 (100.00%), Query Frame = 1


		  
Query: 1   MFFHIILERNMQLHPRHFGPRLRDKLVSKLMKDVEGTCSGRHGFVVAIMGIEHVGKGLIR 60
           MFFHIILERNMQLHPRHFGPRLRDKLVSKLMKDVEGTCSGRHGFVVAIMGIEHVGKGLIR
Sbjct: 1   MFFHIILERNMQLHPRHFGPRLRDKLVSKLMKDVEGTCSGRHGFVVAIMGIEHVGKGLIR 60

Query: 61  DGTGFVTFPVKYKCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQVFVSNHLIPDDMEFQ 120
           DGTGFVTFPVKYKCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQVFVSNHLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYKCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQVFVSNHLIPDDMEFQ 120

Query: 121 SADTPNYTTSDNSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVISDPGAAS 178
           SADTPNYTTSDNSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVISDPGAAS
Sbjct: 121 SADTPNYTTSDNSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVISDPGAAS 177

[Close]

BLAST of Spo05306.1 vs. UniProtKB/TrEMBL
Match: A0A0D9ZYX2_9ORYZ (Uncharacterized protein OS=Oryza glumipatula PE=4 SV=1)

HSP 1 Score: 338.2 bits (866), Expect = 6.100e-90
Identity = 163/176 (92.61%), Postives = 170/176 (96.59%), Query Frame = 1


		  
Query: 1   MFFHIILERNMQLHPRHFGPRLRDKLVSKLMKDVEGTCSGRHGFVVAIMGIEHVGKGLIR 60
           MFFHI+LERNMQLHPRHFGP LRDKLVSKL+KDVEGTCSGRHGFVVAI G+E VGKGLIR
Sbjct: 1   MFFHIVLERNMQLHPRHFGPHLRDKLVSKLIKDVEGTCSGRHGFVVAITGVEDVGKGLIR 60

Query: 61  DGTGFVTFPVKYKCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQVFVSNHLIPDDMEFQ 120
           +GTG+VTFPVKY+CVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQ+FVSNHLIPDDMEFQ
Sbjct: 61  EGTGYVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 121 SADTPNYTTSDNSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVISDPGAA 177
           S D PNYTTSD SVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVISDPGAA
Sbjct: 121 SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVISDPGAA 176

[Close]

BLAST of Spo05306.1 vs. UniProtKB/TrEMBL
Match: A0A0E0DR60_9ORYZ (Uncharacterized protein OS=Oryza meridionalis PE=4 SV=1)

HSP 1 Score: 338.2 bits (866), Expect = 6.100e-90
Identity = 163/176 (92.61%), Postives = 170/176 (96.59%), Query Frame = 1


		  
Query: 1   MFFHIILERNMQLHPRHFGPRLRDKLVSKLMKDVEGTCSGRHGFVVAIMGIEHVGKGLIR 60
           MFFHI+LERNMQLHPRHFGP LRDKLVSKL+KDVEGTCSGRHGFVVAI G+E VGKGLIR
Sbjct: 1   MFFHIVLERNMQLHPRHFGPHLRDKLVSKLIKDVEGTCSGRHGFVVAITGVEDVGKGLIR 60

Query: 61  DGTGFVTFPVKYKCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQVFVSNHLIPDDMEFQ 120
           +GTG+VTFPVKY+CVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQ+FVSNHLIPDDMEFQ
Sbjct: 61  EGTGYVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 121 SADTPNYTTSDNSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVISDPGAA 177
           S D PNYTTSD SVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVISDPGAA
Sbjct: 121 SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVISDPGAA 176

[Close]

BLAST of Spo05306.1 vs. UniProtKB/TrEMBL
Match: A0A0E0HE65_ORYNI (Uncharacterized protein OS=Oryza nivara PE=4 SV=1)

HSP 1 Score: 338.2 bits (866), Expect = 6.100e-90
Identity = 163/176 (92.61%), Postives = 170/176 (96.59%), Query Frame = 1


		  
Query: 1   MFFHIILERNMQLHPRHFGPRLRDKLVSKLMKDVEGTCSGRHGFVVAIMGIEHVGKGLIR 60
           MFFHI+LERNMQLHPRHFGP LRDKLVSKL+KDVEGTCSGRHGFVVAI G+E VGKGLIR
Sbjct: 1   MFFHIVLERNMQLHPRHFGPHLRDKLVSKLIKDVEGTCSGRHGFVVAITGVEDVGKGLIR 60

Query: 61  DGTGFVTFPVKYKCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQVFVSNHLIPDDMEFQ 120
           +GTG+VTFPVKY+CVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQ+FVSNHLIPDDMEFQ
Sbjct: 61  EGTGYVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 121 SADTPNYTTSDNSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVISDPGAA 177
           S D PNYTTSD SVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVISDPGAA
Sbjct: 121 SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVISDPGAA 176

[Close]

BLAST of Spo05306.1 vs. UniProtKB/TrEMBL
Match: A2Y4G7_ORYSI (Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_19893 PE=4 SV=1)

HSP 1 Score: 338.2 bits (866), Expect = 6.100e-90
Identity = 163/176 (92.61%), Postives = 170/176 (96.59%), Query Frame = 1


		  
Query: 1   MFFHIILERNMQLHPRHFGPRLRDKLVSKLMKDVEGTCSGRHGFVVAIMGIEHVGKGLIR 60
           MFFHI+LERNMQLHPRHFGP LRDKLVSKL+KDVEGTCSGRHGFVVAI G+E VGKGLIR
Sbjct: 1   MFFHIVLERNMQLHPRHFGPHLRDKLVSKLIKDVEGTCSGRHGFVVAITGVEDVGKGLIR 60

Query: 61  DGTGFVTFPVKYKCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQVFVSNHLIPDDMEFQ 120
           +GTG+VTFPVKY+CVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQ+FVSNHLIPDDMEFQ
Sbjct: 61  EGTGYVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 121 SADTPNYTTSDNSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVISDPGAA 177
           S D PNYTTSD SVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVISDPGAA
Sbjct: 121 SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVISDPGAA 176

[Close]

BLAST of Spo05306.1 vs. ExPASy Swiss-Prot
Match: RPB7_SOYBN (DNA-directed RNA polymerase II subunit RPB7 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 328.2 bits (840), Expect = 5.600e-89
Identity = 158/173 (91.33%), Postives = 166/173 (95.95%), Query Frame = 1


		  
Query: 1   MFFHIILERNMQLHPRHFGPRLRDKLVSKLMKDVEGTCSGRHGFVVAIMGIEHVGKGLIR 60
           MFFHI+LERNMQLHPR+FG  LRD LVSKLMKDVEGTCSGRHGFVVA+ GIE++GKGLIR
Sbjct: 1   MFFHIVLERNMQLHPRYFGRNLRDNLVSKLMKDVEGTCSGRHGFVVAVTGIENIGKGLIR 60

Query: 61  DGTGFVTFPVKYKCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQVFVSNHLIPDDMEFQ 120
           DGTGFVTFPVKY+CVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQ+FVSNHLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 121 SADTPNYTTSDNSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVISDP 174
           S D PNYTTSD SVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVI+DP
Sbjct: 121 SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDP 173

[Close]

BLAST of Spo05306.1 vs. ExPASy Swiss-Prot
Match: NRPB7_ARATH (DNA-directed RNA polymerase II subunit 7 OS=Arabidopsis thaliana GN=NRPB7 PE=1 SV=1)

HSP 1 Score: 314.7 bits (805), Expect = 6.500e-85
Identity = 151/176 (85.80%), Postives = 163/176 (92.61%), Query Frame = 1


		  
Query: 1   MFFHIILERNMQLHPRHFGPRLRDKLVSKLMKDVEGTCSGRHGFVVAIMGIEHVGKGLIR 60
           MFFHI+LERNMQLHPR FG  L++ LVSKLMKDVEGTCSGRHGFVVAI GI+ +GKGLIR
Sbjct: 1   MFFHIVLERNMQLHPRFFGRNLKENLVSKLMKDVEGTCSGRHGFVVAITGIDTIGKGLIR 60

Query: 61  DGTGFVTFPVKYKCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQVFVSNHLIPDDMEFQ 120
           DGTGFVTFPVKY+CVVFRPFKGEILEAVVT+VNKMGFFAEAGPVQ+FVS HLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTLVNKMGFFAEAGPVQIFVSKHLIPDDMEFQ 120

Query: 121 SADTPNYTTSDNSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVISDPGAA 177
           + D PNYTTSD SVKIQK+ EVRLKIIGTRVDAT IFC+GTIKDDFLGVI+DP AA
Sbjct: 121 AGDMPNYTTSDGSVKIQKECEVRLKIIGTRVDATAIFCVGTIKDDFLGVINDPAAA 176

[Close]

BLAST of Spo05306.1 vs. ExPASy Swiss-Prot
Match: RPB7_BOVIN (DNA-directed RNA polymerase II subunit RPB7 OS=Bos taurus GN=POLR2G PE=1 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 5.000e-53
Identity = 93/172 (54.07%), Postives = 131/172 (76.16%), Query Frame = 1


		  
Query: 1   MFFHIILERNMQLHPRHFGPRLRDKLVSKLMKDVEGTCSGRHGFVVAIMGIEHVGKGLIR 60
           MF+HI LE  + LHPR+FGP L + +  KL  +VEGTC+G++GFV+A+  I+++G G+I+
Sbjct: 1   MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 60

Query: 61  DGTGFVTFPVKYKCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQVFVSNHLIPDDMEFQ 120
            G GFV +PVKYK +VFRPFKGE+++AVVT VNK+G F E GP+  F+S H IP +MEF 
Sbjct: 61  PGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFD 120

Query: 121 -SADTPNYTTSDNSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVIS 172
            +++ P Y T D  + IQ+D E+RLKI+GTRVD  +IF IG++ DD+LG++S
Sbjct: 121 PNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDKNDIFAIGSLMDDYLGLVS 172

[Close]

BLAST of Spo05306.1 vs. ExPASy Swiss-Prot
Match: RPB7_DANRE (DNA-directed RNA polymerase II subunit RPB7 OS=Danio rerio GN=polr2g PE=2 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 5.000e-53
Identity = 94/172 (54.65%), Postives = 131/172 (76.16%), Query Frame = 1


		  
Query: 1   MFFHIILERNMQLHPRHFGPRLRDKLVSKLMKDVEGTCSGRHGFVVAIMGIEHVGKGLIR 60
           MF+HI LE  + LHPR+FGP L + +  KL  +VEGTC+G++GFV+A+  I+++G G+I+
Sbjct: 1   MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 60

Query: 61  DGTGFVTFPVKYKCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQVFVSNHLIPDDMEFQ 120
            G GFV +PVKYK +VFRPFKGE+++AVVT VNK+G F E GP+  F+S H IP +MEF 
Sbjct: 61  PGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFD 120

Query: 121 -SADTPNYTTSDNSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVIS 172
            +++ P Y T D  V IQ+D E+RLKI+GTRVD  +IF IG++ DD+LG++S
Sbjct: 121 PNSNPPCYKTVDEDVVIQQDDEIRLKIVGTRVDKNDIFAIGSLMDDYLGLVS 172

[Close]

BLAST of Spo05306.1 vs. ExPASy Swiss-Prot
Match: RPB7_HUMAN (DNA-directed RNA polymerase II subunit RPB7 OS=Homo sapiens GN=POLR2G PE=1 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 5.000e-53
Identity = 93/172 (54.07%), Postives = 131/172 (76.16%), Query Frame = 1


		  
Query: 1   MFFHIILERNMQLHPRHFGPRLRDKLVSKLMKDVEGTCSGRHGFVVAIMGIEHVGKGLIR 60
           MF+HI LE  + LHPR+FGP L + +  KL  +VEGTC+G++GFV+A+  I+++G G+I+
Sbjct: 1   MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 60

Query: 61  DGTGFVTFPVKYKCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQVFVSNHLIPDDMEFQ 120
            G GFV +PVKYK +VFRPFKGE+++AVVT VNK+G F E GP+  F+S H IP +MEF 
Sbjct: 61  PGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFD 120

Query: 121 -SADTPNYTTSDNSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVIS 172
            +++ P Y T D  + IQ+D E+RLKI+GTRVD  +IF IG++ DD+LG++S
Sbjct: 121 PNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDKNDIFAIGSLMDDYLGLVS 172

[Close]

BLAST of Spo05306.1 vs. TAIR (Arabidopsis)
Match: AT5G59180.1 (DNA-directed RNA polymerase II)

HSP 1 Score: 314.7 bits (805), Expect = 3.600e-86
Identity = 151/176 (85.80%), Postives = 163/176 (92.61%), Query Frame = 1


		  
Query: 1   MFFHIILERNMQLHPRHFGPRLRDKLVSKLMKDVEGTCSGRHGFVVAIMGIEHVGKGLIR 60
           MFFHI+LERNMQLHPR FG  L++ LVSKLMKDVEGTCSGRHGFVVAI GI+ +GKGLIR
Sbjct: 1   MFFHIVLERNMQLHPRFFGRNLKENLVSKLMKDVEGTCSGRHGFVVAITGIDTIGKGLIR 60

Query: 61  DGTGFVTFPVKYKCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQVFVSNHLIPDDMEFQ 120
           DGTGFVTFPVKY+CVVFRPFKGEILEAVVT+VNKMGFFAEAGPVQ+FVS HLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTLVNKMGFFAEAGPVQIFVSKHLIPDDMEFQ 120

Query: 121 SADTPNYTTSDNSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVISDPGAA 177
           + D PNYTTSD SVKIQK+ EVRLKIIGTRVDAT IFC+GTIKDDFLGVI+DP AA
Sbjct: 121 AGDMPNYTTSDGSVKIQKECEVRLKIIGTRVDATAIFCVGTIKDDFLGVINDPAAA 176

[Close]

BLAST of Spo05306.1 vs. TAIR (Arabidopsis)
Match: AT4G14660.1 (RNA polymerase Rpb7-like, N-terminal domain)

HSP 1 Score: 73.6 bits (179), Expect = 1.400e-13
Identity = 44/133 (33.08%), Postives = 77/133 (57.89%), Query Frame = 1


		  
Query: 43  GFVVAIMGIEHVGKGLIRDGTGFVTFPVKYKCVVFRPFKGEILEAVVTMVNKMGFFAEAG 102
           G+ VA+  ++ +G+G IR+ TG V FPV +  + F+ FKGEI+  VV  V K G F   G
Sbjct: 47  GYYVAVTTLDKIGEGKIREHTGEVLFPVMFSGMTFKIFKGEIIHGVVHKVLKHGVFMRCG 106

Query: 103 PVQ-VFVSNHLIPDDMEFQSADTPNYTTSDNSVKIQKDSEVRLKIIGTR--VDATEIFCI 162
           P++ V++S   +P D ++   + P +     S +IQ ++ VR+ +IG +      E   +
Sbjct: 107 PIENVYLSYTKMP-DYKYIPGENPIFMNEKTS-RIQVETTVRVVVIGIKWMEVEREFQAL 166

Query: 163 GTIKDDFLGVISD 173
            +++ D+LG +S+
Sbjct: 167 ASLEGDYLGPLSE 177

[Close]

BLAST of Spo05306.1 vs. TAIR (Arabidopsis)
Match: AT3G22900.1 (RNA polymerase Rpb7-like, N-terminal domain)

HSP 1 Score: 69.3 bits (168), Expect = 2.700e-12
Identity = 39/128 (30.47%), Postives = 69/128 (53.91%), Query Frame = 1


		  
Query: 43  GFVVAIMGIEHVGKGLIRDGTGFVTFPVKYKCVVFRPFKGEILEAVVTMVNKMGFFAEAG 102
           G+++    +E++G+G I++ TG + FPV +  + F+ FKGEI+  VV  V+K G F ++G
Sbjct: 46  GYLITPTILENIGEGKIKEQTGEIQFPVVFNGICFKMFKGEIVHGVVHKVHKTGVFLKSG 105

Query: 103 PVQVFVSNHLIPDDMEFQSADTPNYTTSDNSVKIQKDSEVRLKIIGT--RVDATEIFCIG 162
           P ++   +H+     EF   + P +     S +IQ  + VR  ++ T  R    +   + 
Sbjct: 106 PYEIIYLSHMKMPGYEFIPGENPFFMNQYMS-RIQIGARVRFVVLDTEWREAEKDFMALA 165

Query: 163 TIKDDFLG 169
           +I  D LG
Sbjct: 166 SIDGDNLG 172

The following BLAST results are available for this feature:

BLAST of Spo05306.1 vs. NCBI nr
BLAST of Spo05306.1 vs. UniProtKB/TrEMBL
BLAST of Spo05306.1 vs. ExPASy Swiss-Prot
BLAST of Spo05306.1 vs. TAIR (Arabidopsis)

BLAST of Spo05306.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902165457\|gb\|KNA07108.1\|	2.1e-96	100.	hypothetical protein SOVF_1748...	[more]
gi\|731348804\|ref\|XP_010685673.1\|	1.0e-93	97.7	PREDICTED: DNA-directed RNA po...	[more]
gi\|720082113\|ref\|XP_010242492.1\|	3.9e-90	91.5	PREDICTED: DNA-directed RNA po...	[more]
gi\|1002270760\|ref\|XP_015639700.1\|	8.7e-90	92.6	PREDICTED: DNA-directed RNA po...	[more]
gi\|1002857365\|ref\|XP_006654370.2\|	1.1e-89	92.0	PREDICTED: DNA-directed RNA po...	[more]

BLAST of Spo05306.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9QK90_SPIOL	1.5e-96	100.	Uncharacterized protein OS=Spi...	[more]
A0A0D9ZYX2_9ORYZ	6.1e-90	92.6	Uncharacterized protein OS=Ory...	[more]
A0A0E0DR60_9ORYZ	6.1e-90	92.6	Uncharacterized protein OS=Ory...	[more]
A0A0E0HE65_ORYNI	6.1e-90	92.6	Uncharacterized protein OS=Ory...	[more]
A2Y4G7_ORYSI	6.1e-90	92.6	Putative uncharacterized prote...	[more]

BLAST of Spo05306.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5


Match Name	E-value	Identity	Description
RPB7_SOYBN	5.6e-89	91.3	DNA-directed RNA polymerase II...	[more]
NRPB7_ARATH	6.5e-85	85.8	DNA-directed RNA polymerase II...	[more]
RPB7_BOVIN	5.0e-53	54.0	DNA-directed RNA polymerase II...	[more]
RPB7_DANRE	5.0e-53	54.6	DNA-directed RNA polymerase II...	[more]
RPB7_HUMAN	5.0e-53	54.0	DNA-directed RNA polymerase II...	[more]

BLAST of Spo05306.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 3


Match Name	E-value	Identity	Description
AT5G59180.1	3.6e-86	85.8	DNA-directed RNA polymerase II	[more]
AT4G14660.1	1.4e-13	33.0	RNA polymerase Rpb7-like, N-te...	[more]
AT3G22900.1	2.7e-12	30.4	RNA polymerase Rpb7-like, N-te...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003029	S1 domain	PFAM	PF00575	S1	coord: 78..156 score: 1.2
IPR005576	RNA polymerase Rpb7, N-terminal	GENE3D	3.30.1490.120		coord: 1..82 score: 1.0
IPR005576	RNA polymerase Rpb7, N-terminal	PFAM	PF03876	SHS2_Rpb7-N	coord: 9..77 score: 3.0
IPR005576	RNA polymerase Rpb7, N-terminal	unknown	SSF88798	N-terminal, heterodimerisation domain of RBP7 (RpoE)	coord: 1..78 score: 1.7
IPR012340	Nucleic acid-binding, OB-fold	GENE3D	2.40.50.140		coord: 83..170 score: 2.1
IPR012340	Nucleic acid-binding, OB-fold	unknown	SSF50249	Nucleic acid-binding proteins	coord: 79..169 score: 4.29
None	No IPR available	PANTHER	PTHR12709	DNA-DIRECTED RNA POLYMERASE II, III	coord: 2..173 score: 5.4

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006351	transcription, DNA-templated
biological_process	GO:0006144	purine nucleobase metabolic process
biological_process	GO:0006206	pyrimidine nucleobase metabolic process
biological_process	GO:0000394	RNA splicing, via endonucleolytic cleavage and ligation
biological_process	GO:0006366	transcription by RNA polymerase II
cellular_component	GO:0005665	DNA-directed RNA polymerase II, core complex
cellular_component	GO:0005730	nucleolus
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003723	RNA binding