Spo05546.1 (mRNA) | SpinachBase

Overview


Name	Spo05546.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	Alba DNA/RNA-binding protein
Location	SpoScf_00188 : 197712 .. 200262 (+)
Sequence length	1125

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAGTTTTGACTTTTGAGTTATGGTCGAGTCAGCTTTGGGTCAGTAAATAATACGAAGAACCCGATTTTAAAGCCCAATAATCCATAACCCATAAACCCATAAACCCATTAACCCATTAACCCATCAACCCGTTTTCGTCTAAGAGTAGAAGGTCTTTAGAATGAACAAAGCCTCCATATATAATCTCCCAAAACTGAGGTTTCGAAACTTCCATTAAATAAAACCTTCAATTCTTCAATCAGATTTCCCCTTTTTCTCTCTCCTCAAATCTCAGTGCTTGAAGCTACACTGTTAGCAAAATTGATTGTCATTTTCGGGTTTTCCCCCAAAATTGAATTAAAAAGGATTAGGGTTAGGGATTTGTTAAGCAATGGCTGCCGTCGAACAAATTACTGAGGGGGTTAACAACTTGAGCGTCGTCGATTCTGCGAAGAAGAACCGAATTCAAGTTTCTAACACCAAAAAGCCCCTTTTCTTCTACGTTAATCTCGCCAAGGTAGCACTGCTTGGAAATGGATTTTGCCTTTTGTAATTAGGGTTTTTTGGGGGGATTTTTTTTGTTAATGTTTGATGATGTTTTATTTGCAGAGGTACATGCAGCAACACACTGAGGTTGAGCTTTCTGCTCTGGGAATGGGTATTTTCCCTCTTTCTGTAATTATTGATTTTTCCCCTTTCAGATGTAACGTAGCATGATGTTTATGTTGCGTTAGTTGTAATCTGTTATTTTTTGAAATTTGTAATTGATTGGATTTTTCGTTGAGGATATAATCAGTGAATTGTTAGAAATTATGTTAAAATGATGTAATTAGGAGGCTTAGTTCATGTGTAATTGCATTCTGCTGAGTATGATTGGAAGCAATTAGCTCCAGATACTTGGCTTAGATGTCAAATTTTTAGGTAGTTCCATGAAAATTATATATATAAGGTTCATGTGATACGAGTTCGAGTGTTTGAACCTTCGCCCGTGCACTTAATTATGATACTCCGTAGCTTCTTGATACAACCCCTAATATGAATTTTGTATCCTATAATTGTAATTGGATGTTATCCTCAGTATGAATCCTCCTCGATTATCTATGGTTTCCTTGCACATTTGTATGACTCCATTCTTGCAAAAGTTGCATCCTACTTTGTTATTGATTTATGCCATGTACTTTGTGCTGAGACAAGTGCTGTCTGCGTGTTCTCCATTTGAACGTCTGTGTCCACTCGTGTACCAAACTACTTCCAGAAATTGGTAACTTGGTTGCTCTGGAGACTTAAATGAATTGTATTTTCAGTCTTCTGCTGGAAGGATCTTCAGTAAAGTTTTATGTTAGAAGACCTTGTTACTTCTCATCATCTCATGGTAATCCAGTCATTGCACATCCTTTTCTAGACATATGATGGTTATATACATATGATCATTGACTGTCAGATTCTCTCTTCCATGGTGTTGGTCTTTTTGTTCAGTATTGATTGAATTCATATACTTGTGCTTACTGCTTTGACTTATTTTCCTCGTATATTTCTCTTACTAGTTTTGAATTAATTTTTGCAGCCATTGCCACTGTTGTAAGCGTTGCAGAAATTCTCAAAAATGGTGGGCTAGCTGTTGAGAAGAGTAAGGGCCTTACTTTCTTTTGAGGACAGCTGATATATGAAACAAATATGTTAACCTAGATTGTTTGATTTTTGCAGAGATCATGACATCTACAGTTGATATAAAGGATGATTCGAGAGGAAGGCCAGTCCAGAAGGCAAAGGTAAGCTAGATTTTAGTAGCACTTTTCTGTGAACCATCATTCTTTCATATGTATCCCTGTGGATGATATCTCTTATTTTGGTCTTGGTAAACTAAGATTTTCTCCGTTTCACCTAATTCCTTTAAAAAAAAAATCTACTTGGTAGTTAGTAACTTAGTACCCCTAACTACACTTGTCTCAACTCTCAACTGGCTCTTAAGTCTTAACTGAATTCATATTTCGTTTTGAACTGACATGGTAACCATTATTTGAAATTGTATTTCTCGAAAACTCATTTTTTGAGCTGAAAAGTACAAGACTAAGCATACACTTCAGTATTTTGCTGATTGTGGATGTCTTATCTTTTCTCAGATAGAGATACTACTGGAGAAATCTGGGGACTTTGATGAAATTATGGCAGCTGCAGCTGAGGAAGCAGAAGTTGCTGTCGCTGAAGACTAGAGTTTTTTTAAATAGGGTTCTTTCTTTTGGTGTAGTAATCAAGATTTTCTGATGTAGTCATTTTCTTTCATTGCAAATGTCAAGGGATTTGATTTCCATGTGAGCATGTAGTTAATTAATTTTCCCCCTTTAGTGTAGGTTCCTAGAAAAGTTGTGGATCTTGAAATTGGTTGGTCGTGTCAAAATTTTCATTCAGTTCCTGGGTGTAGTTTTACTGTGGTTAAATGAGATTGTTCGATATAATTCGTGTTCCCATATTTCAAATGTTGTTTGCCTGTCATACGACTCATACAGTTGTGGTACGGGTCTGTATTTCCAAATGCTTACTTGTTCTATCAGTTTTGTCCTTATGTACATCTGTG

mRNA sequence

TAGTTTTGACTTTTGAGTTATGGTCGAGTCAGCTTTGGGTCAGTAAATAATACGAAGAACCCGATTTTAAAGCCCAATAATCCATAACCCATAAACCCATAAACCCATTAACCCATTAACCCATCAACCCGTTTTCGTCTAAGAGTAGAAGGTCTTTAGAATGAACAAAGCCTCCATATATAATCTCCCAAAACTGAGGTTTCGAAACTTCCATTAAATAAAACCTTCAATTCTTCAATCAGATTTCCCCTTTTTCTCTCTCCTCAAATCTCAGTGCTTGAAGCTACACTGTTAGCAAAATTGATTGTCATTTTCGGGTTTTCCCCCAAAATTGAATTAAAAAGGATTAGGGTTAGGGATTTGTTAAGCAATGGCTGCCGTCGAACAAATTACTGAGGGGGTTAACAACTTGAGCGTCGTCGATTCTGCGAAGAAGAACCGAATTCAAGTTTCTAACACCAAAAAGCCCCTTTTCTTCTACGTTAATCTCGCCAAGAGGTACATGCAGCAACACACTGAGGTTGAGCTTTCTGCTCTGGGAATGGCCATTGCCACTGTTGTAAGCGTTGCAGAAATTCTCAAAAATGGTGGGCTAGCTGTTGAGAAGAAGATCATGACATCTACAGTTGATATAAAGGATGATTCGAGAGGAAGGCCAGTCCAGAAGGCAAAGATAGAGATACTACTGGAGAAATCTGGGGACTTTGATGAAATTATGGCAGCTGCAGCTGAGGAAGCAGAAGTTGCTGTCGCTGAAGACTAGAGTTTTTTTAAATAGGGTTCTTTCTTTTGGTGTAGTAATCAAGATTTTCTGATGTAGTCATTTTCTTTCATTGCAAATGTCAAGGGATTTGATTTCCATGTGAGCATGTAGTTAATTAATTTTCCCCCTTTAGTGTAGGTTCCTAGAAAAGTTGTGGATCTTGAAATTGGTTGGTCGTGTCAAAATTTTCATTCAGTTCCTGGGTGTAGTTTTACTGTGGTTAAATGAGATTGTTCGATATAATTCGTGTTCCCATATTTCAAATGTTGTTTGCCTGTCATACGACTCATACAGTTGTGGTACGGGTCTGTATTTCCAAATGCTTACTTGTTCTATCAGTTTTGTCCTTATGTACATCTGTG

Coding sequence (CDS)

ATGGCTGCCGTCGAACAAATTACTGAGGGGGTTAACAACTTGAGCGTCGTCGATTCTGCGAAGAAGAACCGAATTCAAGTTTCTAACACCAAAAAGCCCCTTTTCTTCTACGTTAATCTCGCCAAGAGGTACATGCAGCAACACACTGAGGTTGAGCTTTCTGCTCTGGGAATGGCCATTGCCACTGTTGTAAGCGTTGCAGAAATTCTCAAAAATGGTGGGCTAGCTGTTGAGAAGAAGATCATGACATCTACAGTTGATATAAAGGATGATTCGAGAGGAAGGCCAGTCCAGAAGGCAAAGATAGAGATACTACTGGAGAAATCTGGGGACTTTGATGAAATTATGGCAGCTGCAGCTGAGGAAGCAGAAGTTGCTGTCGCTGAAGACTAG

Protein sequence

MAAVEQITEGVNNLSVVDSAKKNRIQVSNTKKPLFFYVNLAKRYMQQHTEVELSALGMAIATVVSVAEILKNGGLAVEKKIMTSTVDIKDDSRGRPVQKAKIEILLEKSGDFDEIMAAAAEEAEVAVAED

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo05546	Spo05546	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo05546.1	Spo05546.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo05546.1.exon.1	Spo05546.1.exon.1	exon
Spo05546.1.exon.2	Spo05546.1.exon.2	exon
Spo05546.1.exon.3	Spo05546.1.exon.3	exon
Spo05546.1.exon.4	Spo05546.1.exon.4	exon
Spo05546.1.exon.5	Spo05546.1.exon.5	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo05546.1.utr5p.1	Spo05546.1.utr5p.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo05546.1.CDS.1	Spo05546.1.CDS.1	CDS
Spo05546.1.CDS.2	Spo05546.1.CDS.2	CDS
Spo05546.1.CDS.3	Spo05546.1.CDS.3	CDS
Spo05546.1.CDS.4	Spo05546.1.CDS.4	CDS
Spo05546.1.CDS.5	Spo05546.1.CDS.5	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo05546.1.utr3p.1	Spo05546.1.utr3p.1	three_prime_UTR

Homology

[Close]

BLAST of Spo05546.1 vs. NCBI nr
Match: gi|902207141|gb|KNA15636.1| (hypothetical protein SOVF_096530 [Spinacia oleracea])

HSP 1 Score: 236.9 bits (603), Expect = 2.000e-59
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 1


		  
Query: 1   MAAVEQITEGVNNLSVVDSAKKNRIQVSNTKKPLFFYVNLAKRYMQQHTEVELSALGMAI 60
           MAAVEQITEGVNNLSVVDSAKKNRIQVSNTKKPLFFYVNLAKRYMQQHTEVELSALGMAI
Sbjct: 1   MAAVEQITEGVNNLSVVDSAKKNRIQVSNTKKPLFFYVNLAKRYMQQHTEVELSALGMAI 60

Query: 61  ATVVSVAEILKNGGLAVEKKIMTSTVDIKDDSRGRPVQKAKIEILLEKSGDFDEIMAAAA 120
           ATVVSVAEILKNGGLAVEKKIMTSTVDIKDDSRGRPVQKAKIEILLEKSGDFDEIMAAAA
Sbjct: 61  ATVVSVAEILKNGGLAVEKKIMTSTVDIKDDSRGRPVQKAKIEILLEKSGDFDEIMAAAA 120

Query: 121 EEAEVAVAED 131
           EEAEVAVAED
Sbjct: 121 EEAEVAVAED 130

[Close]

BLAST of Spo05546.1 vs. NCBI nr
Match: gi|731353351|ref|XP_010688018.1| (PREDICTED: uncharacterized protein At2g34160-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 218.8 bits (556), Expect = 5.700e-54
Identity = 119/130 (91.54%), Postives = 124/130 (95.38%), Query Frame = 1


		  
Query: 1   MAAVEQITEGVNNLSVVDSAKKNRIQVSNTKKPLFFYVNLAKRYMQQHTEVELSALGMAI 60
           MAAVEQITEGVNNLSV+DS KKNRIQVSNTKKPLFFYVNLAKRYMQQH +VELSALGMAI
Sbjct: 1   MAAVEQITEGVNNLSVIDSGKKNRIQVSNTKKPLFFYVNLAKRYMQQHDDVELSALGMAI 60

Query: 61  ATVVSVAEILKNGGLAVEKKIMTSTVDIKDDSRGRPVQKAKIEILLEKSGDFDEIMAAAA 120
           ATVVSVAEILKNGGLAVEKKIMTSTVDIKDDSRGRPVQKAKIEILLEKS DFD++MAAAA
Sbjct: 61  ATVVSVAEILKNGGLAVEKKIMTSTVDIKDDSRGRPVQKAKIEILLEKSEDFDKLMAAAA 120

Query: 121 EEAEVAVAED 131
           EE  VA AE+
Sbjct: 121 EEEAVAAAEE 130

[Close]

BLAST of Spo05546.1 vs. NCBI nr
Match: gi|702372561|ref|XP_010061927.1| (PREDICTED: uncharacterized protein At2g34160-like [Eucalyptus grandis])

HSP 1 Score: 199.9 bits (507), Expect = 2.700e-48
Identity = 105/127 (82.68%), Postives = 118/127 (92.91%), Query Frame = 1


		  
Query: 4   VEQITEGVNNLSVVDSAKKNRIQVSNTKKPLFFYVNLAKRYMQQHTEVELSALGMAIATV 63
           +E++TEG+NN+++ DS KKNRIQVSNTKKPLFFYVNLAKRYMQQH EVELSALGMAIATV
Sbjct: 1   MEEVTEGINNIAITDSHKKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMAIATV 60

Query: 64  VSVAEILKNGGLAVEKKIMTSTVDIKDDSRGRPVQKAKIEILLEKSGDFDEIMAAAAEEA 123
           V+VAEILKN GLAVEKKIMTSTVDIKDDSRGRPVQKAKIEI+L K+ +FDE+MAAAAEE 
Sbjct: 61  VTVAEILKNNGLAVEKKIMTSTVDIKDDSRGRPVQKAKIEIVLGKTANFDELMAAAAEER 120

Query: 124 EVAVAED 131
           E A AE+
Sbjct: 121 EAAEAEE 127

[Close]

BLAST of Spo05546.1 vs. NCBI nr
Match: gi|672136696|ref|XP_008792056.1| (PREDICTED: uncharacterized protein At2g34160-like [Phoenix dactylifera])

HSP 1 Score: 198.0 bits (502), Expect = 1.000e-47
Identity = 106/127 (83.46%), Postives = 116/127 (91.34%), Query Frame = 1


		  
Query: 4   VEQITEGVNNLSVVDSAKKNRIQVSNTKKPLFFYVNLAKRYMQQHTEVELSALGMAIATV 63
           +E+ITEGVNNLSV DS KKNRIQVSNTKKPLFFYVNLAKRYMQQH EVELSALGMAIATV
Sbjct: 1   MEEITEGVNNLSVADSNKKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMAIATV 60

Query: 64  VSVAEILKNGGLAVEKKIMTSTVDIKDDSRGRPVQKAKIEILLEKSGDFDEIMAAAAEEA 123
           V++AEILKN GLAVEKKIMTSTVD+KD+SRGRP+QKAKIEILL K+  FDE+MAAAAEE 
Sbjct: 61  VTIAEILKNNGLAVEKKIMTSTVDVKDESRGRPIQKAKIEILLGKTEKFDELMAAAAEER 120

Query: 124 EVAVAED 131
           E A  E+
Sbjct: 121 EAADGEE 127

[Close]

BLAST of Spo05546.1 vs. NCBI nr
Match: gi|595928947|ref|XP_007215146.1| (hypothetical protein PRUPE_ppa013322mg [Prunus persica])

HSP 1 Score: 197.2 bits (500), Expect = 1.800e-47
Identity = 105/127 (82.68%), Postives = 118/127 (92.91%), Query Frame = 1


		  
Query: 4   VEQITEGVNNLSVVDSAKKNRIQVSNTKKPLFFYVNLAKRYMQQHTEVELSALGMAIATV 63
           +E+ITEGVNN+ + DS KKNRIQVSNTKKPLFFYVNLAKRYMQQ+ EVELSALGMAIATV
Sbjct: 1   MEEITEGVNNIIIADSHKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIATV 60

Query: 64  VSVAEILKNGGLAVEKKIMTSTVDIKDDSRGRPVQKAKIEILLEKSGDFDEIMAAAAEEA 123
           V++AEILKN GLAVEKKIMTSTVDIKDDSRGRPVQKAKIEI+L KS +FD++MAAAAEE 
Sbjct: 61  VTIAEILKNNGLAVEKKIMTSTVDIKDDSRGRPVQKAKIEIILGKSENFDDLMAAAAEER 120

Query: 124 EVAVAED 131
           E+A AE+
Sbjct: 121 EIAGAEE 127

[Close]

BLAST of Spo05546.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R821_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_096530 PE=4 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 1.400e-59
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 1


		  
Query: 1   MAAVEQITEGVNNLSVVDSAKKNRIQVSNTKKPLFFYVNLAKRYMQQHTEVELSALGMAI 60
           MAAVEQITEGVNNLSVVDSAKKNRIQVSNTKKPLFFYVNLAKRYMQQHTEVELSALGMAI
Sbjct: 1   MAAVEQITEGVNNLSVVDSAKKNRIQVSNTKKPLFFYVNLAKRYMQQHTEVELSALGMAI 60

Query: 61  ATVVSVAEILKNGGLAVEKKIMTSTVDIKDDSRGRPVQKAKIEILLEKSGDFDEIMAAAA 120
           ATVVSVAEILKNGGLAVEKKIMTSTVDIKDDSRGRPVQKAKIEILLEKSGDFDEIMAAAA
Sbjct: 61  ATVVSVAEILKNGGLAVEKKIMTSTVDIKDDSRGRPVQKAKIEILLEKSGDFDEIMAAAA 120

Query: 121 EEAEVAVAED 131
           EEAEVAVAED
Sbjct: 121 EEAEVAVAED 130

[Close]

BLAST of Spo05546.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BSA2_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_8g194660 PE=4 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 3.900e-54
Identity = 119/130 (91.54%), Postives = 124/130 (95.38%), Query Frame = 1


		  
Query: 1   MAAVEQITEGVNNLSVVDSAKKNRIQVSNTKKPLFFYVNLAKRYMQQHTEVELSALGMAI 60
           MAAVEQITEGVNNLSV+DS KKNRIQVSNTKKPLFFYVNLAKRYMQQH +VELSALGMAI
Sbjct: 1   MAAVEQITEGVNNLSVIDSGKKNRIQVSNTKKPLFFYVNLAKRYMQQHDDVELSALGMAI 60

Query: 61  ATVVSVAEILKNGGLAVEKKIMTSTVDIKDDSRGRPVQKAKIEILLEKSGDFDEIMAAAA 120
           ATVVSVAEILKNGGLAVEKKIMTSTVDIKDDSRGRPVQKAKIEILLEKS DFD++MAAAA
Sbjct: 61  ATVVSVAEILKNGGLAVEKKIMTSTVDIKDDSRGRPVQKAKIEILLEKSEDFDKLMAAAA 120

Query: 121 EEAEVAVAED 131
           EE  VA AE+
Sbjct: 121 EEEAVAAAEE 130

[Close]

BLAST of Spo05546.1 vs. UniProtKB/TrEMBL
Match: A0A059BRW3_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F02537 PE=4 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 1.900e-48
Identity = 105/127 (82.68%), Postives = 118/127 (92.91%), Query Frame = 1


		  
Query: 4   VEQITEGVNNLSVVDSAKKNRIQVSNTKKPLFFYVNLAKRYMQQHTEVELSALGMAIATV 63
           +E++TEG+NN+++ DS KKNRIQVSNTKKPLFFYVNLAKRYMQQH EVELSALGMAIATV
Sbjct: 1   MEEVTEGINNIAITDSHKKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMAIATV 60

Query: 64  VSVAEILKNGGLAVEKKIMTSTVDIKDDSRGRPVQKAKIEILLEKSGDFDEIMAAAAEEA 123
           V+VAEILKN GLAVEKKIMTSTVDIKDDSRGRPVQKAKIEI+L K+ +FDE+MAAAAEE 
Sbjct: 61  VTVAEILKNNGLAVEKKIMTSTVDIKDDSRGRPVQKAKIEIVLGKTANFDELMAAAAEER 120

Query: 124 EVAVAED 131
           E A AE+
Sbjct: 121 EAAEAEE 127

[Close]

BLAST of Spo05546.1 vs. UniProtKB/TrEMBL
Match: M5XBA4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013322mg PE=4 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 1.200e-47
Identity = 105/127 (82.68%), Postives = 118/127 (92.91%), Query Frame = 1


		  
Query: 4   VEQITEGVNNLSVVDSAKKNRIQVSNTKKPLFFYVNLAKRYMQQHTEVELSALGMAIATV 63
           +E+ITEGVNN+ + DS KKNRIQVSNTKKPLFFYVNLAKRYMQQ+ EVELSALGMAIATV
Sbjct: 1   MEEITEGVNNIIIADSHKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIATV 60

Query: 64  VSVAEILKNGGLAVEKKIMTSTVDIKDDSRGRPVQKAKIEILLEKSGDFDEIMAAAAEEA 123
           V++AEILKN GLAVEKKIMTSTVDIKDDSRGRPVQKAKIEI+L KS +FD++MAAAAEE 
Sbjct: 61  VTIAEILKNNGLAVEKKIMTSTVDIKDDSRGRPVQKAKIEIILGKSENFDDLMAAAAEER 120

Query: 124 EVAVAED 131
           E+A AE+
Sbjct: 121 EIAGAEE 127

[Close]

BLAST of Spo05546.1 vs. UniProtKB/TrEMBL
Match: W1NYK4_AMBTC (Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00104p00132470 PE=4 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 1.600e-47
Identity = 103/130 (79.23%), Postives = 119/130 (91.54%), Query Frame = 1


		  
Query: 1   MAAVEQITEGVNNLSVVDSAKKNRIQVSNTKKPLFFYVNLAKRYMQQHTEVELSALGMAI 60
           MAA+E++TE V+NL V +S KKNRIQVSNTKKPLFFYVNLAKRYMQQH EVELSALGMAI
Sbjct: 1   MAAIEEVTEAVSNLHVSESHKKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMAI 60

Query: 61  ATVVSVAEILKNGGLAVEKKIMTSTVDIKDDSRGRPVQKAKIEILLEKSGDFDEIMAAAA 120
           ATVV++AEILKN GLA+EKKIMTSTVD+KD+SRGRP+QKAKIEILL K+ +FDE+MAAAA
Sbjct: 61  ATVVTIAEILKNNGLAIEKKIMTSTVDMKDESRGRPIQKAKIEILLGKTANFDELMAAAA 120

Query: 121 EEAEVAVAED 131
           EE E+A  E+
Sbjct: 121 EEREIAEGEE 130

[Close]

BLAST of Spo05546.1 vs. ExPASy Swiss-Prot
Match: Y2416_ARATH (Uncharacterized protein At2g34160 OS=Arabidopsis thaliana GN=At2g34160 PE=1 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 1.100e-44
Identity = 100/127 (78.74%), Postives = 112/127 (88.19%), Query Frame = 1


		  
Query: 4   VEQITEGVNNLSVV-DSAKKNRIQVSNTKKPLFFYVNLAKRYMQQHTEVELSALGMAIAT 63
           +E+IT+GVNN+++  DS KKNRIQVSNTKKPLFFYVNLAKRYMQQ+ +VELSALGMAIAT
Sbjct: 1   MEEITDGVNNMNLATDSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNDVELSALGMAIAT 60

Query: 64  VVSVAEILKNGGLAVEKKIMTSTVDIKDDSRGRPVQKAKIEILLEKSGDFDEIMAAAAEE 123
           VV+V EILKN G AVEKKIMTSTVDIKDD+RGRPVQKAKIEI L KS  FDE+MAAA EE
Sbjct: 61  VVTVTEILKNNGFAVEKKIMTSTVDIKDDARGRPVQKAKIEITLVKSEKFDELMAAANEE 120

Query: 124 AEVAVAE 130
            E A A+
Sbjct: 121 KEDAEAQ 127

[Close]

BLAST of Spo05546.1 vs. TAIR (Arabidopsis)
Match: AT1G29250.1 (Alba DNA/RNA-binding protein)

HSP 1 Score: 188.7 bits (478), Expect = 2.200e-48
Identity = 104/128 (81.25%), Postives = 116/128 (90.62%), Query Frame = 1


		  
Query: 4   VEQITEGVNNLSV-VDSAKKNRIQVSNTKKPLFFYVNLAKRYMQQHTEVELSALGMAIAT 63
           +E+ITEGVNN+++ VD+ KKNRIQVSNTKKPLFFYVNLAKRYMQQ+T+VELSALGMAIAT
Sbjct: 1   MEEITEGVNNMNLAVDTQKKNRIQVSNTKKPLFFYVNLAKRYMQQYTDVELSALGMAIAT 60

Query: 64  VVSVAEILKNGGLAVEKKIMTSTVDIKDDSRGRPVQKAKIEILLEKSGDFDEIMAAAAEE 123
           VV+VAEILKN G AVEKKIMTSTVDIKDDSRGRPVQKAKIEI L KS  FDE+MAAA EE
Sbjct: 61  VVTVAEILKNNGFAVEKKIMTSTVDIKDDSRGRPVQKAKIEITLAKSEKFDELMAAANEE 120

Query: 124 AEVAVAED 131
            E A A++
Sbjct: 121 KEAAEAQE 128

[Close]

BLAST of Spo05546.1 vs. TAIR (Arabidopsis)
Match: AT2G34160.1 (Alba DNA/RNA-binding protein)

HSP 1 Score: 180.6 bits (457), Expect = 6.000e-46
Identity = 100/127 (78.74%), Postives = 112/127 (88.19%), Query Frame = 1


		  
Query: 4   VEQITEGVNNLSVV-DSAKKNRIQVSNTKKPLFFYVNLAKRYMQQHTEVELSALGMAIAT 63
           +E+IT+GVNN+++  DS KKNRIQVSNTKKPLFFYVNLAKRYMQQ+ +VELSALGMAIAT
Sbjct: 1   MEEITDGVNNMNLATDSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNDVELSALGMAIAT 60

Query: 64  VVSVAEILKNGGLAVEKKIMTSTVDIKDDSRGRPVQKAKIEILLEKSGDFDEIMAAAAEE 123
           VV+V EILKN G AVEKKIMTSTVDIKDD+RGRPVQKAKIEI L KS  FDE+MAAA EE
Sbjct: 61  VVTVTEILKNNGFAVEKKIMTSTVDIKDDARGRPVQKAKIEITLVKSEKFDELMAAANEE 120

Query: 124 AEVAVAE 130
            E A A+
Sbjct: 121 KEDAEAQ 127

[Close]

BLAST of Spo05546.1 vs. TAIR (Arabidopsis)
Match: AT3G04620.1 (Alba DNA/RNA-binding protein)

HSP 1 Score: 142.1 bits (357), Expect = 2.400e-34
Identity = 79/128 (61.72%), Postives = 98/128 (76.56%), Query Frame = 1


		  
Query: 15  SVVDSAKKNRIQVSNTKKPLFFYVNLAKRYMQQHTEVELSALGMAIATVVSVAEILKNGG 74
           + V++ KKNRIQVSNTKKPLFFYVNLAKRY+QQH EVELSALGMAI TVV+++EILKN G
Sbjct: 30  ATVETHKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTISEILKNNG 89

Query: 75  LAVEKKIMTSTVDIKDDSRGRPVQKAKIEILLEKSGDFDEIM------------AAAAEE 131
           LA EKK++TSTV +KD+++G+ VQKAKIEI+L KS  FD ++            A+A  E
Sbjct: 90  LATEKKVLTSTVGMKDETKGKMVQKAKIEIVLGKSDKFDSLVPPVTNGKTPEEEASAETE 149

The following BLAST results are available for this feature:

BLAST of Spo05546.1 vs. NCBI nr
BLAST of Spo05546.1 vs. UniProtKB/TrEMBL
BLAST of Spo05546.1 vs. ExPASy Swiss-Prot
BLAST of Spo05546.1 vs. TAIR (Arabidopsis)

BLAST of Spo05546.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902207141\|gb\|KNA15636.1\|	2.0e-59	100.	hypothetical protein SOVF_0965...	[more]
gi\|731353351\|ref\|XP_010688018.1\|	5.7e-54	91.5	PREDICTED: uncharacterized pro...	[more]
gi\|702372561\|ref\|XP_010061927.1\|	2.7e-48	82.6	PREDICTED: uncharacterized pro...	[more]
gi\|672136696\|ref\|XP_008792056.1\|	1.0e-47	83.4	PREDICTED: uncharacterized pro...	[more]
gi\|595928947\|ref\|XP_007215146.1\|	1.8e-47	82.6	hypothetical protein PRUPE_ppa...	[more]

BLAST of Spo05546.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9R821_SPIOL	1.4e-59	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8BSA2_BETVU	3.9e-54	91.5	Uncharacterized protein OS=Bet...	[more]
A0A059BRW3_EUCGR	1.9e-48	82.6	Uncharacterized protein OS=Euc...	[more]
M5XBA4_PRUPE	1.2e-47	82.6	Uncharacterized protein OS=Pru...	[more]
W1NYK4_AMBTC	1.6e-47	79.2	Uncharacterized protein OS=Amb...	[more]

BLAST of Spo05546.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 1


Match Name	E-value	Identity	Description
Y2416_ARATH	1.1e-44	78.7	Uncharacterized protein At2g34...	[more]

BLAST of Spo05546.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 3


Match Name	E-value	Identity	Description
AT1G29250.1	2.2e-48	81.2	Alba DNA/RNA-binding protein	[more]
AT2G34160.1	6.0e-46	78.7	Alba DNA/RNA-binding protein	[more]
AT3G04620.1	2.4e-34	61.7	Alba DNA/RNA-binding protein	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002775	DNA/RNA-binding protein Alba-like	GENE3D	3.30.110.20		coord: 21..126 score: 8.9
IPR002775	DNA/RNA-binding protein Alba-like	PFAM	PF01918	Alba	coord: 23..77 score: 1.1
IPR002775	DNA/RNA-binding protein Alba-like	unknown	SSF82704	AlbA-like	coord: 22..117 score: 4.32
IPR014560	Uncharacterised conserved protein UCP030333, DNA/RNA-binding Alba-related	PIR	PIRSF030333	UCP030333_Alba	coord: 2..130 score: 7.7
None	No IPR available	PANTHER	PTHR31947	FAMILY NOT NAMED	coord: 4..130 score: 1.0

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding