Spo05748.1 (mRNA) | SpinachBase

Overview


Name	Spo05748.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	SWIb domain-containing protein
Location	SpoScf_01432 : 149033 .. 151372 (+)
Sequence length	420

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGGAGCACTAGGGGGTGGGATGAAAGTGGTGGTTTTAGGGGCGAAGAATTCGTCTGTATTTGGTGGTTTTCCGGTGAATAATCCGTCGACAGTGGTGTGTTTCCCGTCGGAAATTAACCGGAAATTTGGAGGAGTGGCGGCTTGTGCTACTTCGCCGCCGACAACAAGGAAGCCGAGAGGAATAATGAAGCCGAGACCAATTTCTCCTGTTCTTCAAGAACTTGTGGGTGCTCCAGAAATTTCTAGAACCCAAGCTCTTAAGGTCATCTGGGCCCACATCAAAGCCAACAATCTTCAGGTTATCCCTTTCTCTAGACTCTATCATTCCAAAGTTTCTAATAATTTCGAGTGATTTTTAGGGTTTTATTTGTCTCTAATTTTTGCTGTTTTATGAATTGCATATTTTTGTGCATTTTTAGTAATTTCGGAGTAATATTTGAATTGTTTCTTGTTCTTGGGTGTTGGAAATATTACGTCTACTAGAGAGAATATTTTTTCTTGTTTGACATGTCAAAACTTTATAATTTTTTGTGTATGTTTTTAATTTTTGCGAAGTTAGATGGTAAACTAATATCTGTGGATTAAGATAATAGAGATTATACTGGTTTCCATGTTTGGATAGTGATTTTTGTTGTAATTTGAGGCTATACCATTAATTTCAACAAAATAATGGATAAGCTTACCAGAGTGTCTCTTTTACTCTTTATCGTACTGTAAGCAGTGTACATTCGACTCCTCTTATACTTCCTTAGAGACGATGGGGTATAGTAAATGACCTTGGAAATGAACAAGGTAGTTCTCCACCTGGCTCGACTGGACTCATTTGCATATATTCATACTTTAGTTGTCTATAAACTTCCTCCATTTCTTATTAGTTGACACAATTTGACTTCGACACTATTCATACAAGCTTTATGATTCTCTTTTGTGATTTATCTTGATAAAAAACTTAAAATCATACGGGGTCTTCTAAGATTCGTCTTAATGACTTTTTATAATCTTTTCCTATTCATAGTTGGAGATATTAATTTTTGAAATCGGATATTGGCAAACGTGCCTAAAGGATTGTGTCAACTGGAAAAGAATGGGGGAAGTATTTAGTTGTGGTTGAAACATTTATCAATATAAAGTATGTGAAATACCTCTGATTAACATCGAATAACGACCTCTGAAGTGTGAACTCTTCCCGTTCCCAAGGTGTTTTGCTCTTTGCTTTTTCTTCAAGTACTTAGGAATTAGGAATGCATTTTGAAAGCTGAAACAAATTCAAGTACTTAGGAATGCATTTTGAAAGCTGAAATGATATTTTAATTTGATTTGTCCAAATTGTATGTCATCGTTGTGTGAATTTAATTATTGATTAAGGAAGTCTTTTTTTTTTTTNGTCCAAATTGTATGTCATCGTTGTGTGAATTTAATTATTGATTAAGGAAGTCTTTTTTTTTTTTTGACGGGATTAAGGAAGTCATATATACATACATGTNGTCCAAATTGTATGTCATCGTTGTGTGAATTTAATTATTGATTAAGGAAGTCTTTTTTTTTTTTGACGGGATTAAGGAAGTCATATATACATACATGTCGGCTTTCTGCTGAAGTTTAGAATAGCAGGGTTATCTAGTTATTCTTGTCAATGATGAATGATACTTGGGTATCAATGANGTTTAGAATAGCAGGGTTATCTAGTTATTCTTGTCAATGATGAATGATACTTGGGTATCAATGACATTCATATTAGTTCCCATCGCTTTTTAGGAACTAATGCTTTATCTCTGATCAACCTGTAAAGCTTAAAAATTCAAGTCAAAATTGGATATCTCTGGCCATTCTTGTTTTCTAGAATATGGTCTCTTTTTTTAGTACTAATTAAGAGCACCTGAGTTGTGTAATGAAGACATTAGCAAGAAGGTAGTTTTCTTTCATGCATTATTTCCTTTAATGCTTGCATTTGTTTCTTAATGCTATGGTATTGATTTCTTTCCTTGCGACATGAGTATTTTAAGGAACAACTGCTTAGTTATTCAGATAGAATAAACAAAGAAAATCTCACATGCTTGTTTCCGTGTGATCTGATTTGATCCTAACTTCTACACCGAGCTTCTATAGTTCTATACCCTGGTTATGCACTCATTTATGTATTGAAATTCCAGTTTTGCAGTAATTATGTTGTCTAATGTATGAGGCTTTTAGTAATCTGAAAATTCTGTCTCATGTTTAGGACCCCAACGACAAGAAAGTCATCGTATGTGACGAGTTGCTGAAGAAAATATTCGCAGGAAAGGAACGCGTGGGTTTTCTCGAGATCTCAGGATTGATCACTCCTCACTTGCTTTAG

mRNA sequence

ATGGCCGGAGCACTAGGGGGTGGGATGAAAGTGGTGGTTTTAGGGGCGAAGAATTCGTCTGTATTTGGTGGTTTTCCGGTGAATAATCCGTCGACAGTGGTGTGTTTCCCGTCGGAAATTAACCGGAAATTTGGAGGAGTGGCGGCTTGTGCTACTTCGCCGCCGACAACAAGGAAGCCGAGAGGAATAATGAAGCCGAGACCAATTTCTCCTGTTCTTCAAGAACTTGTGGGTGCTCCAGAAATTTCTAGAACCCAAGCTCTTAAGGTCATCTGGGCCCACATCAAAGCCAACAATCTTCAGGACCCCAACGACAAGAAAGTCATCGTATGTGACGAGTTGCTGAAGAAAATATTCGCAGGAAAGGAACGCGTGGGTTTTCTCGAGATCTCAGGATTGATCACTCCTCACTTGCTTTAG

Coding sequence (CDS)

ATGGCCGGAGCACTAGGGGGTGGGATGAAAGTGGTGGTTTTAGGGGCGAAGAATTCGTCTGTATTTGGTGGTTTTCCGGTGAATAATCCGTCGACAGTGGTGTGTTTCCCGTCGGAAATTAACCGGAAATTTGGAGGAGTGGCGGCTTGTGCTACTTCGCCGCCGACAACAAGGAAGCCGAGAGGAATAATGAAGCCGAGACCAATTTCTCCTGTTCTTCAAGAACTTGTGGGTGCTCCAGAAATTTCTAGAACCCAAGCTCTTAAGGTCATCTGGGCCCACATCAAAGCCAACAATCTTCAGGACCCCAACGACAAGAAAGTCATCGTATGTGACGAGTTGCTGAAGAAAATATTCGCAGGAAAGGAACGCGTGGGTTTTCTCGAGATCTCAGGATTGATCACTCCTCACTTGCTTTAG

Protein sequence

MAGALGGGMKVVVLGAKNSSVFGGFPVNNPSTVVCFPSEINRKFGGVAACATSPPTTRKPRGIMKPRPISPVLQELVGAPEISRTQALKVIWAHIKANNLQDPNDKKVIVCDELLKKIFAGKERVGFLEISGLITPHLL

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo05748	Spo05748	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo05748.1	Spo05748.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo05748.1.exon.1	Spo05748.1.exon.1	exon
Spo05748.1.exon.2	Spo05748.1.exon.2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo05748.1.CDS.1	Spo05748.1.CDS.1	CDS
Spo05748.1.CDS.2	Spo05748.1.CDS.2	CDS

Homology

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BLAST of Spo05748.1 vs. NCBI nr
Match: gi|902213327|gb|KNA17246.1| (hypothetical protein SOVF_081490 [Spinacia oleracea])

HSP 1 Score: 279.3 bits (713), Expect = 3.800e-72
Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 1


		  
Query: 1   MAGALGGGMKVVVLGAKNSSVFGGFPVNNPSTVVCFPSEINRKFGGVAACATSPPTTRKP 60
           MAGALGGGMKVVVLGAKNSSVFGGFPVNNPSTVVCFPSEINRKFGGVAACATSPPTTRKP
Sbjct: 1   MAGALGGGMKVVVLGAKNSSVFGGFPVNNPSTVVCFPSEINRKFGGVAACATSPPTTRKP 60

Query: 61  RGIMKPRPISPVLQELVGAPEISRTQALKVIWAHIKANNLQDPNDKKVIVCDELLKKIFA 120
           RGIMKPRPISPVLQELVGAPEISRTQALKVIWAHIKANNLQDPNDKKVIVCDELLKKIFA
Sbjct: 61  RGIMKPRPISPVLQELVGAPEISRTQALKVIWAHIKANNLQDPNDKKVIVCDELLKKIFA 120

Query: 121 GKERVGFLEISGLITPHLL 140
           GKERVGFLEISGLITPHLL
Sbjct: 121 GKERVGFLEISGLITPHLL 139

[Close]

BLAST of Spo05748.1 vs. NCBI nr
Match: gi|731337032|ref|XP_010679574.1| (PREDICTED: upstream activation factor subunit UAF30 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 223.8 bits (569), Expect = 1.900e-55
Identity = 118/142 (83.10%), Postives = 125/142 (88.03%), Query Frame = 1


		  
Query: 1   MAGALGGGMKVVVLGAKNSSVF-GGFPVNNPSTVVCFPSEINRKFGGVAACATSP--PTT 60
           MAGA+G GM+ V+LGAK SSVF GGFPV  P T VCF ++ +RK  GVAAC TS   PTT
Sbjct: 1   MAGAIGCGMRTVILGAKKSSVFMGGFPVKTPVTSVCFLAKNSRK-SGVAACTTSSSSPTT 60

Query: 61  RKPRGIMKPRPISPVLQELVGAPEISRTQALKVIWAHIKANNLQDPNDKKVIVCDELLKK 120
           RKPRGIMKPRPISPVLQELVGAPEISRTQALKVIWAHIKANNLQDPNDKK+IVCDELLKK
Sbjct: 61  RKPRGIMKPRPISPVLQELVGAPEISRTQALKVIWAHIKANNLQDPNDKKIIVCDELLKK 120

Query: 121 IFAGKERVGFLEISGLITPHLL 140
           IF GKERVGFLEISGLITPHLL
Sbjct: 121 IFGGKERVGFLEISGLITPHLL 141

[Close]

BLAST of Spo05748.1 vs. NCBI nr
Match: gi|658057342|ref|XP_008364448.1| (PREDICTED: uncharacterized protein LOC103428126 [Malus domestica])

HSP 1 Score: 146.7 bits (369), Expect = 2.900e-32
Identity = 77/124 (62.10%), Postives = 94/124 (75.81%), Query Frame = 1


		  
Query: 19  SSVFGGFPVNNPSTVVCF-PSEINRKFGGVAACATSPPTT--RKPRGIMKPRPISPVLQE 78
           +S F   P ++PS+ + F P+ +        A A+ P TT  R+PRGIMKPR +SP +Q 
Sbjct: 20  TSSFISPPFSSPSSSLRFAPANLRMVRIPTLATASKPATTTPREPRGIMKPRKVSPEMQA 79

Query: 79  LVGAPEISRTQALKVIWAHIKANNLQDPNDKKVIVCDELLKKIFAGKERVGFLEISGLIT 138
           LVGAPEISRTQALK IWAHIK NNLQDP +K++IVCDE LKKIFAGK+RVGFLE++GLIT
Sbjct: 80  LVGAPEISRTQALKQIWAHIKQNNLQDPQNKRIIVCDEKLKKIFAGKDRVGFLEVAGLIT 139

Query: 139 PHLL 140
           PH L
Sbjct: 140 PHFL 143

[Close]

BLAST of Spo05748.1 vs. NCBI nr
Match: gi|595793657|ref|XP_007200577.1| (hypothetical protein PRUPE_ppa013038mg [Prunus persica])

HSP 1 Score: 143.7 bits (361), Expect = 2.500e-31
Identity = 70/105 (66.67%), Postives = 84/105 (80.00%), Query Frame = 1


		  
Query: 36  FPSEINRKFGGVAACATSPPTT-RKPRGIMKPRPISPVLQELVGAPEISRTQALKVIWAH 95
           FP+ +        A A+ P TT R+PRGIMKPR +SP +Q LVG PEISRTQALK+IWAH
Sbjct: 39  FPANLRMVRIPTLATASKPATTPRQPRGIMKPRKVSPEMQALVGTPEISRTQALKLIWAH 98

Query: 96  IKANNLQDPNDKKVIVCDELLKKIFAGKERVGFLEISGLITPHLL 140
           IK NNLQDP +K++IVCDE LKKIFAGK++VGFLE++GLITPH L
Sbjct: 99  IKQNNLQDPQNKRIIVCDEKLKKIFAGKDQVGFLEVAGLITPHFL 143

[Close]

BLAST of Spo05748.1 vs. NCBI nr
Match: gi|658061265|ref|XP_008366495.1| (PREDICTED: uncharacterized protein LOC103430142 [Malus domestica])

HSP 1 Score: 142.9 bits (359), Expect = 4.200e-31
Identity = 75/123 (60.98%), Postives = 93/123 (75.61%), Query Frame = 1


		  
Query: 19  SSVFGGFPVNNPSTVVCF-PSEINRKFGGVAACATSPPTT-RKPRGIMKPRPISPVLQEL 78
           +S F   P ++ S+ + F P+ +        A A+ P TT R+PRGIMKPR +SP +Q L
Sbjct: 17  TSSFVILPFSSSSSSLRFAPANLRMVRIPTLATASKPATTPREPRGIMKPRKVSPEMQAL 76

Query: 79  VGAPEISRTQALKVIWAHIKANNLQDPNDKKVIVCDELLKKIFAGKERVGFLEISGLITP 138
           VGAPEISRTQALK IWAHIK NNLQDP +K++IVCDE LK+IFAGK+RVGFLE++GLITP
Sbjct: 77  VGAPEISRTQALKQIWAHIKQNNLQDPQNKRIIVCDEKLKQIFAGKDRVGFLEVAGLITP 136

Query: 139 HLL 140
           H L
Sbjct: 137 HFL 139

[Close]

BLAST of Spo05748.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RCL4_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_081490 PE=4 SV=1)

HSP 1 Score: 279.3 bits (713), Expect = 2.600e-72
Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 1


		  
Query: 1   MAGALGGGMKVVVLGAKNSSVFGGFPVNNPSTVVCFPSEINRKFGGVAACATSPPTTRKP 60
           MAGALGGGMKVVVLGAKNSSVFGGFPVNNPSTVVCFPSEINRKFGGVAACATSPPTTRKP
Sbjct: 1   MAGALGGGMKVVVLGAKNSSVFGGFPVNNPSTVVCFPSEINRKFGGVAACATSPPTTRKP 60

Query: 61  RGIMKPRPISPVLQELVGAPEISRTQALKVIWAHIKANNLQDPNDKKVIVCDELLKKIFA 120
           RGIMKPRPISPVLQELVGAPEISRTQALKVIWAHIKANNLQDPNDKKVIVCDELLKKIFA
Sbjct: 61  RGIMKPRPISPVLQELVGAPEISRTQALKVIWAHIKANNLQDPNDKKVIVCDELLKKIFA 120

Query: 121 GKERVGFLEISGLITPHLL 140
           GKERVGFLEISGLITPHLL
Sbjct: 121 GKERVGFLEISGLITPHLL 139

[Close]

BLAST of Spo05748.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CCU7_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g127680 PE=4 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 1.300e-55
Identity = 118/142 (83.10%), Postives = 125/142 (88.03%), Query Frame = 1


		  
Query: 1   MAGALGGGMKVVVLGAKNSSVF-GGFPVNNPSTVVCFPSEINRKFGGVAACATSP--PTT 60
           MAGA+G GM+ V+LGAK SSVF GGFPV  P T VCF ++ +RK  GVAAC TS   PTT
Sbjct: 1   MAGAIGCGMRTVILGAKKSSVFMGGFPVKTPVTSVCFLAKNSRK-SGVAACTTSSSSPTT 60

Query: 61  RKPRGIMKPRPISPVLQELVGAPEISRTQALKVIWAHIKANNLQDPNDKKVIVCDELLKK 120
           RKPRGIMKPRPISPVLQELVGAPEISRTQALKVIWAHIKANNLQDPNDKK+IVCDELLKK
Sbjct: 61  RKPRGIMKPRPISPVLQELVGAPEISRTQALKVIWAHIKANNLQDPNDKKIIVCDELLKK 120

Query: 121 IFAGKERVGFLEISGLITPHLL 140
           IF GKERVGFLEISGLITPHLL
Sbjct: 121 IFGGKERVGFLEISGLITPHLL 141

[Close]

BLAST of Spo05748.1 vs. UniProtKB/TrEMBL
Match: M5VLL6_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013038mg PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 1.700e-31
Identity = 70/105 (66.67%), Postives = 84/105 (80.00%), Query Frame = 1


		  
Query: 36  FPSEINRKFGGVAACATSPPTT-RKPRGIMKPRPISPVLQELVGAPEISRTQALKVIWAH 95
           FP+ +        A A+ P TT R+PRGIMKPR +SP +Q LVG PEISRTQALK+IWAH
Sbjct: 39  FPANLRMVRIPTLATASKPATTPRQPRGIMKPRKVSPEMQALVGTPEISRTQALKLIWAH 98

Query: 96  IKANNLQDPNDKKVIVCDELLKKIFAGKERVGFLEISGLITPHLL 140
           IK NNLQDP +K++IVCDE LKKIFAGK++VGFLE++GLITPH L
Sbjct: 99  IKQNNLQDPQNKRIIVCDEKLKKIFAGKDQVGFLEVAGLITPHFL 143

[Close]

BLAST of Spo05748.1 vs. UniProtKB/TrEMBL
Match: A0A059BD90_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G01289 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 2.100e-29
Identity = 65/89 (73.03%), Postives = 77/89 (86.52%), Query Frame = 1


		  
Query: 51  ATSPPTTRKPRGIMKPRPISPVLQELVGAPEISRTQALKVIWAHIKANNLQDPNDKKVIV 110
           A+S    R+PRGIMKPRP+SP +Q LVG PEI RTQALK+IWA+IK +NLQDP +KKVI+
Sbjct: 53  ASSSAGKREPRGIMKPRPVSPEMQALVGVPEIPRTQALKLIWAYIKEHNLQDPENKKVIM 112

Query: 111 CDELLKKIFAGKERVGFLEISGLITPHLL 140
           CDE LKKIFAGK+RVGFLEI+GLI+PH L
Sbjct: 113 CDEKLKKIFAGKDRVGFLEIAGLISPHFL 141

[Close]

BLAST of Spo05748.1 vs. UniProtKB/TrEMBL
Match: B9HS93_POPTR (SWIB complex BAF60b domain-containing family protein OS=Populus trichocarpa GN=POPTR_0009s09520g PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 2.800e-29
Identity = 62/93 (66.67%), Postives = 78/93 (83.87%), Query Frame = 1


		  
Query: 47  VAACATSPPTTRKPRGIMKPRPISPVLQELVGAPEISRTQALKVIWAHIKANNLQDPNDK 106
           V  CAT+    R PRGIMKPR +SP + + +GAPE+SRTQALK+IWAHIK +NLQDP++K
Sbjct: 48  VVTCATASTGNRAPRGIMKPRRVSPEMADFIGAPEVSRTQALKLIWAHIKEHNLQDPSNK 107

Query: 107 KVIVCDELLKKIFAGKERVGFLEISGLITPHLL 140
           K I+CDE LKKIFAG+++VGFLEI+GLI+PH L
Sbjct: 108 KNIICDEKLKKIFAGRDQVGFLEIAGLISPHFL 140

[Close]

BLAST of Spo05748.1 vs. ExPASy Swiss-Prot
Match: UAF30_SCHPO (Upstream activation factor subunit spp27 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=spp27 PE=1 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.800e-10
Identity = 28/55 (50.91%), Postives = 41/55 (74.55%), Query Frame = 1


		  
Query: 65  KPRPISPVLQELVGAPEISRTQALKVIWAHIKANNLQDPNDKKVIVCDELLKKIF 120
           KP  +SP L E +G  ++SR Q +K +W +IKA++LQDPNDK+ I+CD+ LK +F
Sbjct: 119 KPMKLSPKLAEFLGLEQLSRPQTVKKLWEYIKAHDLQDPNDKRTILCDDKLKSVF 173

[Close]

BLAST of Spo05748.1 vs. ExPASy Swiss-Prot
Match: TRI1_YEAST (Protein TRI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TRI1 PE=1 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 4.500e-9
Identity = 30/70 (42.86%), Postives = 50/70 (71.43%), Query Frame = 1


		  
Query: 69  ISPVLQELVGAPEISRTQALKVIWAHIKANNLQDPNDKKVIVCDELLKKIFAGKERVGFL 128
           +S  LQ+ +G+ E+ RTQ +K+IW +IK ++LQ+P D++ I+CDE ++ IF GK+   F 
Sbjct: 126 LSAPLQKFLGSEELPRTQVVKMIWQYIKEHDLQNPKDRREILCDEKMEPIF-GKKMTMF- 185

Query: 129 EISGLITPHL 139
            ++ L+T HL
Sbjct: 186 SMNKLLTKHL 193

[Close]

BLAST of Spo05748.1 vs. ExPASy Swiss-Prot
Match: UAF30_YEAST (Upstream activation factor subunit UAF30 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=UAF30 PE=1 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.700e-8
Identity = 35/101 (34.65%), Postives = 59/101 (58.42%), Query Frame = 1


		  
Query: 38  SEINRKFGGVAACATSPPTTRKPRGIMKPRPISPVLQELVGAPEISRTQALKVIWAHIKA 97
           + + +K G V+    SP +TRK         +S  L  L+G  E++RT+ ++ +WA+IKA
Sbjct: 105 THVEKKKGTVSK---SPISTRKVT-------LSKSLASLLGEHELTRTEVVRRLWAYIKA 164

Query: 98  NNLQDPNDKKVIVCDELLKKIFAGKERVGFLEISGLITPHL 139
           +NLQ+PN+KK I+CDE L+ I    +     E+  ++  H+
Sbjct: 165 HNLQNPNNKKEILCDEKLELILG--KSTNMFEMHKILASHM 193

[Close]

BLAST of Spo05748.1 vs. ExPASy Swiss-Prot
Match: SNF12_ARATH (SWI/SNF complex component SNF12 homolog OS=Arabidopsis thaliana GN=At5g14170 PE=1 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 2.800e-6
Identity = 25/70 (35.71%), Postives = 42/70 (60.00%), Query Frame = 1


		  
Query: 69  ISPVLQELVGAPEISRTQALKVIWAHIKANNLQDPNDKKVIVCDELLKKIFAGKERVGFL 128
           +S  L +++G    +R + +  IW ++KA  LQ+PND     CD  L+K+F G+E++ F 
Sbjct: 321 LSTALMDVLGIEVETRPRIIAAIWHYVKARKLQNPNDPSFFNCDAALQKVF-GEEKLKFT 380

Query: 129 EISGLITPHL 139
            +S  I+ HL
Sbjct: 381 MVSQKISHHL 389

[Close]

BLAST of Spo05748.1 vs. TAIR (Arabidopsis)
Match: AT4G34290.1 (SWIB/MDM2 domain superfamily protein)

HSP 1 Score: 127.5 bits (319), Expect = 6.500e-30
Identity = 64/96 (66.67%), Postives = 77/96 (80.21%), Query Frame = 1


		  
Query: 48  AACATSPPT----TRKPRGIMKPRPISPVLQELVGAPEISRTQALKVIWAHIKANNLQDP 107
           AA A+S PT    TR+PRGIMKPRP+S  +Q++VG PEI RTQALK IWA+IK ++LQDP
Sbjct: 49  AAAASSDPTTTTKTREPRGIMKPRPVSQAMQDVVGVPEIPRTQALKRIWAYIKEHDLQDP 108

Query: 108 NDKKVIVCDELLKKIFAGKERVGFLEISGLITPHLL 140
            +K+ I+CDE LKKIF GKERVGFLEI+ LI PH L
Sbjct: 109 QNKRDILCDEKLKKIFEGKERVGFLEIAKLIGPHFL 144

[Close]

BLAST of Spo05748.1 vs. TAIR (Arabidopsis)
Match: AT2G14880.1 (SWIB/MDM2 domain superfamily protein)

HSP 1 Score: 119.4 bits (298), Expect = 1.800e-27
Identity = 59/95 (62.11%), Postives = 75/95 (78.95%), Query Frame = 1


		  
Query: 48  AACATSPPTT---RKPRGIMKPRPISPVLQELVGAPEISRTQALKVIWAHIKANNLQDPN 107
           +A  +S PT    R PRGIMKPRP+SP +Q++V  PEI+RTQALK IWA+IK ++LQDP 
Sbjct: 47  SATESSEPTATNKRVPRGIMKPRPVSPEMQDIVELPEIARTQALKRIWAYIKEHDLQDPQ 106

Query: 108 DKKVIVCDELLKKIFAGKERVGFLEISGLITPHLL 140
           +K+ I+CDE LKKIF G++RVGFLEI+ LI PH L
Sbjct: 107 NKREILCDEKLKKIFEGRDRVGFLEIAKLIGPHFL 141

[Close]

BLAST of Spo05748.1 vs. TAIR (Arabidopsis)
Match: AT3G03590.1 (SWIB/MDM2 domain superfamily protein)

HSP 1 Score: 97.4 bits (241), Expect = 7.200e-21
Identity = 47/87 (54.02%), Postives = 63/87 (72.41%), Query Frame = 1


		  
Query: 55  PTTRKPR--GIMKPRPISPVLQELVGAPEISRTQALKVIWAHIKANNLQDPNDKKVIVCD 114
           P  + PR  GI K  P+SPVL + +G  E SRT A+K IW +IK+++LQ+P DK+ I CD
Sbjct: 54  PAKKTPRSTGIFKVTPVSPVLAQFLGTGETSRTDAIKGIWTYIKSHDLQNPADKREIFCD 113

Query: 115 ELLKKIFAGKERVGFLEISGLITPHLL 140
           E LK IF GK++VGFLEIS L++PH +
Sbjct: 114 ETLKLIFEGKDKVGFLEISKLLSPHFV 140

[Close]

BLAST of Spo05748.1 vs. TAIR (Arabidopsis)
Match: AT2G35605.1 (SWIB/MDM2 domain superfamily protein)

HSP 1 Score: 94.4 bits (233), Expect = 6.100e-20
Identity = 47/90 (52.22%), Postives = 63/90 (70.00%), Query Frame = 1


		  
Query: 48  AACATSPPTTRKPRGIMKPRPISPVLQELVGAPEISRTQALKVIWAHIKANNLQDPNDKK 107
           AA +T   T R+  GI+K  P+S  L   +G  E+SRT A+K IW +IK NNLQ+P +K+
Sbjct: 15  AASSTGAKTGRQGTGILKVVPVSKPLANFIGENEVSRTTAVKKIWEYIKLNNLQNPVNKR 74

Query: 108 VIVCDELLKKIFAGKERVGFLEISGLITPH 138
            I+CDE LK IF+GK+ VGFLEIS L++ H
Sbjct: 75  EILCDEQLKTIFSGKDTVGFLEISKLLSQH 104

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BLAST of Spo05748.1 vs. TAIR (Arabidopsis)
Match: AT1G31760.1 (SWIB/MDM2 domain superfamily protein)

HSP 1 Score: 82.0 bits (201), Expect = 3.100e-16
Identity = 43/104 (41.35%), Postives = 61/104 (58.65%), Query Frame = 1


		  
Query: 40  INRKFGGV------AACATSPPTTRKPRGIMKPRPISPVLQELVGAPEISRTQALKVIWA 99
           I+R  GG       AA   +     + +GI K RP+S  L    G  E++R  ALK +W 
Sbjct: 4   ISRVLGGFRTLMSKAATVEAVTVAGEGKGIFKTRPVSQQLASFAGERELTRGSALKKVWE 63

Query: 100 HIKANNLQDPNDKKVIVCDELLKKIFAGKERVGFLEISGLITPH 138
           ++K +NLQ+P +KK I CD+ LK IF GK++VG  EI  L++PH
Sbjct: 64  YVKLHNLQNPANKKEIHCDDKLKTIFDGKDKVGITEIMKLLSPH 107

The following BLAST results are available for this feature:

BLAST of Spo05748.1 vs. NCBI nr
BLAST of Spo05748.1 vs. UniProtKB/TrEMBL
BLAST of Spo05748.1 vs. ExPASy Swiss-Prot
BLAST of Spo05748.1 vs. TAIR (Arabidopsis)

BLAST of Spo05748.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902213327\|gb\|KNA17246.1\|	3.8e-72	100.	hypothetical protein SOVF_0814...	[more]
gi\|731337032\|ref\|XP_010679574.1\|	1.9e-55	83.1	PREDICTED: upstream activation...	[more]
gi\|658057342\|ref\|XP_008364448.1\|	2.9e-32	62.1	PREDICTED: uncharacterized pro...	[more]
gi\|595793657\|ref\|XP_007200577.1\|	2.5e-31	66.6	hypothetical protein PRUPE_ppa...	[more]
gi\|658061265\|ref\|XP_008366495.1\|	4.2e-31	60.9	PREDICTED: uncharacterized pro...	[more]

BLAST of Spo05748.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9RCL4_SPIOL	2.6e-72	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8CCU7_BETVU	1.3e-55	83.1	Uncharacterized protein OS=Bet...	[more]
M5VLL6_PRUPE	1.7e-31	66.6	Uncharacterized protein OS=Pru...	[more]
A0A059BD90_EUCGR	2.1e-29	73.0	Uncharacterized protein OS=Euc...	[more]
B9HS93_POPTR	2.8e-29	66.6	SWIB complex BAF60b domain-con...	[more]

BLAST of Spo05748.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 4


Match Name	E-value	Identity	Description
UAF30_SCHPO	1.8e-10	50.9	Upstream activation factor sub...	[more]
TRI1_YEAST	4.5e-9	42.8	Protein TRI1 OS=Saccharomyces ...	[more]
UAF30_YEAST	1.7e-8	34.6	Upstream activation factor sub...	[more]
SNF12_ARATH	2.8e-6	35.7	SWI/SNF complex component SNF1...	[more]

BLAST of Spo05748.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5


Match Name	E-value	Identity	Description
AT4G34290.1	6.5e-30	66.6	SWIB/MDM2 domain superfamily p...	[more]
AT2G14880.1	1.8e-27	62.1	SWIB/MDM2 domain superfamily p...	[more]
AT3G03590.1	7.2e-21	54.0	SWIB/MDM2 domain superfamily p...	[more]
AT2G35605.1	6.1e-20	52.2	SWIB/MDM2 domain superfamily p...	[more]
AT1G31760.1	3.1e-16	41.3	SWIB/MDM2 domain superfamily p...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003121	SWIB/MDM2 domain	GENE3D	1.10.245.10		coord: 57..138 score: 1.3
IPR003121	SWIB/MDM2 domain	PFAM	PF02201	SWIB	coord: 65..138 score: 9.4
IPR003121	SWIB/MDM2 domain	unknown	SSF47592	SWIB/MDM2 domain	coord: 57..138 score: 3.92
IPR019835	SWIB domain	SMART	SM00151	swib_2	coord: 63..139 score: 1.7
None	No IPR available	PANTHER	PTHR13844	BRG-1 ASSOCIATED FACTOR 60 BAF60	coord: 55..139 score: 3.3
None	No IPR available	PANTHER	PTHR13844:SF8	EXPRESSED PROTEIN	coord: 55..139 score: 3.3

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding