Spo05753.1 (mRNA) | SpinachBase

Overview


Name	Spo05753.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	Tetratricopeptide repeat protein 13
Location	SpoScf_01432 : 160206 .. 162895 (-)
Sequence length	735

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TCCCTGATAAATCTCAGTTGCTCATTTGCATTAGCTTGCTTCTTGATGAGTCCATTTGTTTTATACTTATTTGTTTTTTATTTTTCCTTTACAAGTGCCTTTCAAATCTAGTTAGTAATTAAATTTATCAACTATCTGCAGATTATGCTTGCGGATACCTGCTCTGATCTTCACAAAAGTGTTGGCGAGGACTTTTGGGTGTCTACATGGTGCAGAAGTATGGCATCTGAGGGGTAAGTATTTGCTTGAGATTTTTCTAAAATATGGCTTTAGCACGATTTTATGTGTATGAAGTACCTCCGAAAATGAAAAAAAAAAAACATTATCCTTTCTTCTTGTTATCTTCTTTGATATTGTAGTCATGTAGGCTGGGATTACTCTAGTAGTTGAATTCATGGTTAATAAACTGACTACTTGTTGTTTGGCTCTCTCAGCAAGCAGTTGGAGGGGACAAGAATCACCCTTCTGAAATCGTATGATTTAAGTTCTTTGATTTGCGTGATTAGTCTGGCATATTTGGTTTTCCATTTTCCTAAATATCCTTCTGCCAACACTTATTATGGCTTTCTGCAATTTCTTTTTAGGGGAGAACGTGGATTTGATTTTGCCATAAGAACGCCTTGTACACCTTCTAGATGGAATGAGTTTGATATTGAAATGGCAACAGCATGGGAGGTTTGTGCATAAATTGTTGTTTGCTCCTGACATTTGTGCTTTCTGTTTCTTCCTGGTTCAATATTTCTTTTGGATTTGTTTGTATTATATTTCTAAAGCTGTTAGTTATCTATAGTTCTGGAACGCAAATTTTACTGCATCTTATTTTTTGTAGTTCAACGTAAAGATGTTAATTTGATATTTGAACTTTGAACCTTGATCGGAGGCTTTTGATATCCTAAGATATGAATATTGTTACCTGTAATAAGTATTCTTTCCAGGGTGCAATCTAGAGAACTTGAACCAGTAAACCTCTTCACAGAGATCTTTTTCCAAGAAAAATATACTTTCGTATTTCTTTTTTCAATCATCTGCTTTCCTACTTGTGAAGTTGTGTAAAGAAGATTTTTTTTTCTATTGAGATGCCGGATACGTTGTTGTGTAATTCTTTGAAGTGAAACATACTATTCAGGCTATGATTTGGAAAGAAAGTTTATATTCTCTGCTTCATTTGGGTGTCGGACAATTTGGCATACATATCAACGCTCAATATTTGGTCTTATCATGTATTTTGCTAGATTTAGAGACATAAGATCCAACCTAGTCGTTTTTCCTTGGAAAAAATAAATGTGGTGTACTATTTAAATCTATCTTGCTGGTTAACATTCAGCGCATAACAATGTTTTTATATCGTGTTTTCACCTTTTTCAAGACTGATAGAATCAGAAACTGCATTTGTTGCTTCTATGTTTCCTGATGTAAAGGATCTATTGTGTTTGTAGGCTCTGTGCAATGCTTATTGTGGGGAGGCTTATGGGTCTTCTGATTTCAATGCCCTTGAAAATGTGAGAGATGCAATTTTAAGGATGACATACTACTGGTATGACAGCTTTAATCACTTGCTTCCATTTTGCTTGTTCAGATTGTGGTAGTGGTGATGATTTTATCTTTTGTTGTATAGCACATTGTAATTTTAGTTCCTGATTGTGTAAAGGTTTTTAGATTAGTCTGTGTACTGTCTGTTATGTTGAGATGTTGGACTTTGTTTTTCGCTTATTGATCTTTTTCGTTAGTTTGTAGATTAATTTTAGTTTGGGGTGCTTTCAGCTACCCTGGTATTATTCTTCTTAGGTAGATTTGAGAGGCTGACATACATTGCATAGTTGACTTCCCCCTGTTAAGGGTTAGGAGAAGACTTATTCGGCTAGGTCTGGGTTAAGTTTTGTTTGCCTTGACAGGACTAGGGCTTGGGTGTTCGTGCACTCCTATGCTATTACCTTCCTCACAGCTGTTTGCCTGTTTGGATGATTTAGGTTGGGCATCTTTACACTGAAAACATTTTACACCAAACCAAACGTAGTCTAGATGTATGTGATGTTGCCTTCTGCTGAAAGGATTGTGCATACAAATCTACTACTCAGGTCCATGCCTAAAGGAAACTTCATCTTTGACCTTCTCGTAGATTGTGGATATTAAGAAATACCCATTTAACCCCTTCAATATGTCTTTCTCGAAACTCATGTCGTACTCGTAAGATCCCAGGTTAAAATTTTGGTACATGATTATAAGATGAAACTCTCTAAGTTTACCACCCTTATAAAGTTTCTCGGAACTCATGTCGTGCTCTTAAAGTTTATTTTCCCTTTAAACAACTCCTGAAGTAGTAATATTTTGGACAAGTGAGTAATCAATCTGAGACGATGTATCTAATAGGGAGTTCTTGGCTCGATTTGATATGACTTTGCAGGTATAATTTCATGCCACTATCCAGAGGTTCTGCTGTGGTCGGGTTTGTAGTTTTGCTTGGATTGTGTCTTGCAGCAAATATGGAGTTCACTGAGAATGTTCCAGAAGGATTGCAAGTTGACTGGGAAGCTATTCTTACTTTCGATCCTGACTCCTTTATGGAGTCTGTGAAGAAATGGTTGTATCCAAATCTTAAGGTGACAACATCTTGGAAAGACTACCCAGATGTTGCATCAACCCTTTCAACTACTGGATCCGTCATTGCTGCTCTCAGCACTTACAACAACTGA

mRNA sequence

TCCCTGATAAATCTCAGTTGCTCATTTGCATTAGCTTGCTTCTTGATGAGTCCATTTGTTTTATACTTATTTGTTTTTTATTTTTCCTTTACAAGTGCCTTTCAAATCTAGTTAGTAATTAAATTTATCAACTATCTGCAGATTATGCTTGCGGATACCTGCTCTGATCTTCACAAAAGTGTTGGCGAGGACTTTTGGGTGTCTACATGGTGCAGAAGTATGGCATCTGAGGGGGGAGAACGTGGATTTGATTTTGCCATAAGAACGCCTTGTACACCTTCTAGATGGAATGAGTTTGATATTGAAATGGCAACAGCATGGGAGGCTCTGTGCAATGCTTATTGTGGGGAGGCTTATGGGTCTTCTGATTTCAATGCCCTTGAAAATGTGAGAGATGCAATTTTAAGGATGACATACTACTGCTACCCTGGTATTATTCTTCTTAGGTATAATTTCATGCCACTATCCAGAGGTTCTGCTGTGGTCGGGTTTGTAGTTTTGCTTGGATTGTGTCTTGCAGCAAATATGGAGTTCACTGAGAATGTTCCAGAAGGATTGCAAGTTGACTGGGAAGCTATTCTTACTTTCGATCCTGACTCCTTTATGGAGTCTGTGAAGAAATGGTTGTATCCAAATCTTAAGGTGACAACATCTTGGAAAGACTACCCAGATGTTGCATCAACCCTTTCAACTACTGGATCCGTCATTGCTGCTCTCAGCACTTACAACAACTGA

Coding sequence (CDS)

ATGCTTGCGGATACCTGCTCTGATCTTCACAAAAGTGTTGGCGAGGACTTTTGGGTGTCTACATGGTGCAGAAGTATGGCATCTGAGGGGGGAGAACGTGGATTTGATTTTGCCATAAGAACGCCTTGTACACCTTCTAGATGGAATGAGTTTGATATTGAAATGGCAACAGCATGGGAGGCTCTGTGCAATGCTTATTGTGGGGAGGCTTATGGGTCTTCTGATTTCAATGCCCTTGAAAATGTGAGAGATGCAATTTTAAGGATGACATACTACTGCTACCCTGGTATTATTCTTCTTAGGTATAATTTCATGCCACTATCCAGAGGTTCTGCTGTGGTCGGGTTTGTAGTTTTGCTTGGATTGTGTCTTGCAGCAAATATGGAGTTCACTGAGAATGTTCCAGAAGGATTGCAAGTTGACTGGGAAGCTATTCTTACTTTCGATCCTGACTCCTTTATGGAGTCTGTGAAGAAATGGTTGTATCCAAATCTTAAGGTGACAACATCTTGGAAAGACTACCCAGATGTTGCATCAACCCTTTCAACTACTGGATCCGTCATTGCTGCTCTCAGCACTTACAACAACTGA

Protein sequence

MLADTCSDLHKSVGEDFWVSTWCRSMASEGGERGFDFAIRTPCTPSRWNEFDIEMATAWEALCNAYCGEAYGSSDFNALENVRDAILRMTYYCYPGIILLRYNFMPLSRGSAVVGFVVLLGLCLAANMEFTENVPEGLQVDWEAILTFDPDSFMESVKKWLYPNLKVTTSWKDYPDVASTLSTTGSVIAALSTYNN

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo05753	Spo05753	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo05753.1	Spo05753.1-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo05753.1.utr5p.1	Spo05753.1.utr5p.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo05753.1.CDS.5	Spo05753.1.CDS.5	CDS
Spo05753.1.CDS.4	Spo05753.1.CDS.4	CDS
Spo05753.1.CDS.3	Spo05753.1.CDS.3	CDS
Spo05753.1.CDS.2	Spo05753.1.CDS.2	CDS
Spo05753.1.CDS.1	Spo05753.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo05753.1.exon.5	Spo05753.1.exon.5	exon
Spo05753.1.exon.4	Spo05753.1.exon.4	exon
Spo05753.1.exon.3	Spo05753.1.exon.3	exon
Spo05753.1.exon.2	Spo05753.1.exon.2	exon
Spo05753.1.exon.1	Spo05753.1.exon.1	exon

Homology

[Close]

BLAST of Spo05753.1 vs. NCBI nr
Match: gi|902213325|gb|KNA17244.1| (hypothetical protein SOVF_081470, partial [Spinacia oleracea])

HSP 1 Score: 375.9 bits (964), Expect = 4.200e-101
Identity = 186/209 (89.00%), Postives = 187/209 (89.47%), Query Frame = 1


		  
Query: 1   MLADTCSDLHKSVGEDFWVSTWCRSMASEG-------------GERGFDFAIRTPCTPSR 60
           MLADTCSDLHKSVGEDFWVSTWCRSMASEG             GERGFDFAIRTPCTPSR
Sbjct: 750 MLADTCSDLHKSVGEDFWVSTWCRSMASEGKQLEGTRITLLKSGERGFDFAIRTPCTPSR 809

Query: 61  WNEFDIEMATAWEALCNAYCGEAYGSSDFNALENVRDAILRMTYYCYPGIILLRYNFMPL 120
           WNEFDIEMATAWEALCNAYCGEAYGSSDFNALENVRDAILRMTYY Y        NFMPL
Sbjct: 810 WNEFDIEMATAWEALCNAYCGEAYGSSDFNALENVRDAILRMTYYWY--------NFMPL 869

Query: 121 SRGSAVVGFVVLLGLCLAANMEFTENVPEGLQVDWEAILTFDPDSFMESVKKWLYPNLKV 180
           SRGSAVVGFVVLLGLCLAANMEFTENVPEGLQVDWEAILTFDPDSF+ESVKKWLYPNLKV
Sbjct: 870 SRGSAVVGFVVLLGLCLAANMEFTENVPEGLQVDWEAILTFDPDSFVESVKKWLYPNLKV 929

Query: 181 TTSWKDYPDVASTLSTTGSVIAALSTYNN 197
           TTSWKDYPDVASTLSTTGSVIAALSTYNN
Sbjct: 930 TTSWKDYPDVASTLSTTGSVIAALSTYNN 950

[Close]

BLAST of Spo05753.1 vs. NCBI nr
Match: gi|731337036|ref|XP_010679576.1| (PREDICTED: suppressor of RPS4-RLD 1 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 343.6 bits (880), Expect = 2.300e-91
Identity = 165/209 (78.95%), Postives = 179/209 (85.65%), Query Frame = 1


		  
Query: 1    MLADTCSDLHKSVGEDFWVSTWCRSMASEG-------------GERGFDFAIRTPCTPSR 60
            M AD+CSDLHK+VGEDFWVSTWC SMA EG             GERGFDFAIRTPCTP+R
Sbjct: 829  MRADSCSDLHKTVGEDFWVSTWCNSMAIEGKQLEGTRITLLKTGERGFDFAIRTPCTPAR 888

Query: 61   WNEFDIEMATAWEALCNAYCGEAYGSSDFNALENVRDAILRMTYYCYPGIILLRYNFMPL 120
            WNEFD EMA AWEALCNAYCGEAYGS+DFNALENVRDAILR+ YY Y        NFMPL
Sbjct: 889  WNEFDTEMAMAWEALCNAYCGEAYGSTDFNALENVRDAILRIAYYWY--------NFMPL 948

Query: 121  SRGSAVVGFVVLLGLCLAANMEFTENVPEGLQVDWEAILTFDPDSFMESVKKWLYPNLKV 180
            SRGSAVVGFVVLLGLCLAANMEF+ ++PEG+Q+DWEAILTFDPDSF+ESVKKWLYP+LKV
Sbjct: 949  SRGSAVVGFVVLLGLCLAANMEFSGSIPEGMQIDWEAILTFDPDSFVESVKKWLYPSLKV 1008

Query: 181  TTSWKDYPDVASTLSTTGSVIAALSTYNN 197
            TTSWKDYPDVAST STTGSV+AALS+YNN
Sbjct: 1009 TTSWKDYPDVASTFSTTGSVVAALSSYNN 1029

[Close]

BLAST of Spo05753.1 vs. NCBI nr
Match: gi|802645495|ref|XP_012079354.1| (PREDICTED: suppressor of RPS4-RLD 1 isoform X2 [Jatropha curcas])

HSP 1 Score: 302.0 bits (772), Expect = 7.700e-79
Identity = 144/209 (68.90%), Postives = 166/209 (79.43%), Query Frame = 1


		  
Query: 1    MLADTCSDLHKSVGEDFWVSTWCRSMASEG-------------GERGFDFAIRTPCTPSR 60
            M A TCSDL+K VGEDFW++TWC S A+EG             GE GFDFAIRTPCTPSR
Sbjct: 895  MDAKTCSDLYKVVGEDFWLATWCNSTATEGKQLEGTRITLVKMGEHGFDFAIRTPCTPSR 954

Query: 61   WNEFDIEMATAWEALCNAYCGEAYGSSDFNALENVRDAILRMTYYCYPGIILLRYNFMPL 120
            W+E+D EMA AWEA+CNAYC E YGS+D + LENVRDAILRMTYY Y        NFMPL
Sbjct: 955  WDEYDAEMAMAWEAVCNAYCSENYGSTDLDVLENVRDAILRMTYYWY--------NFMPL 1014

Query: 121  SRGSAVVGFVVLLGLCLAANMEFTENVPEGLQVDWEAILTFDPDSFMESVKKWLYPNLKV 180
            SRG+A VGF+VLLGL LAANMEF E +P+G+QVDWEAIL FDP SF++S K WLYP+LKV
Sbjct: 1015 SRGTAAVGFIVLLGLLLAANMEFEEKIPKGVQVDWEAILNFDPSSFVDSAKSWLYPSLKV 1074

Query: 181  TTSWKDYPDVASTLSTTGSVIAALSTYNN 197
            TTSWKDYPDVAST +TTGSV+AALS+Y++
Sbjct: 1075 TTSWKDYPDVASTFATTGSVVAALSSYDD 1095

[Close]

BLAST of Spo05753.1 vs. NCBI nr
Match: gi|802645491|ref|XP_012079353.1| (PREDICTED: suppressor of RPS4-RLD 1 isoform X1 [Jatropha curcas])

HSP 1 Score: 302.0 bits (772), Expect = 7.700e-79
Identity = 144/209 (68.90%), Postives = 166/209 (79.43%), Query Frame = 1


		  
Query: 1    MLADTCSDLHKSVGEDFWVSTWCRSMASEG-------------GERGFDFAIRTPCTPSR 60
            M A TCSDL+K VGEDFW++TWC S A+EG             GE GFDFAIRTPCTPSR
Sbjct: 905  MDAKTCSDLYKVVGEDFWLATWCNSTATEGKQLEGTRITLVKMGEHGFDFAIRTPCTPSR 964

Query: 61   WNEFDIEMATAWEALCNAYCGEAYGSSDFNALENVRDAILRMTYYCYPGIILLRYNFMPL 120
            W+E+D EMA AWEA+CNAYC E YGS+D + LENVRDAILRMTYY Y        NFMPL
Sbjct: 965  WDEYDAEMAMAWEAVCNAYCSENYGSTDLDVLENVRDAILRMTYYWY--------NFMPL 1024

Query: 121  SRGSAVVGFVVLLGLCLAANMEFTENVPEGLQVDWEAILTFDPDSFMESVKKWLYPNLKV 180
            SRG+A VGF+VLLGL LAANMEF E +P+G+QVDWEAIL FDP SF++S K WLYP+LKV
Sbjct: 1025 SRGTAAVGFIVLLGLLLAANMEFEEKIPKGVQVDWEAILNFDPSSFVDSAKSWLYPSLKV 1084

Query: 181  TTSWKDYPDVASTLSTTGSVIAALSTYNN 197
            TTSWKDYPDVAST +TTGSV+AALS+Y++
Sbjct: 1085 TTSWKDYPDVASTFATTGSVVAALSSYDD 1105

[Close]

BLAST of Spo05753.1 vs. NCBI nr
Match: gi|449448472|ref|XP_004141990.1| (PREDICTED: suppressor of RPS4-RLD 1 [Cucumis sativus])

HSP 1 Score: 301.2 bits (770), Expect = 1.300e-78
Identity = 145/209 (69.38%), Postives = 165/209 (78.95%), Query Frame = 1


		  
Query: 1    MLADTCSDLHKSVGEDFWVSTWCRSMASEG-------------GERGFDFAIRTPCTPSR 60
            M A +CSDL+K VGEDFW++TWC S A EG             GERGFDFAIRTPCTPSR
Sbjct: 846  MQAKSCSDLYKVVGEDFWLATWCNSTAFEGKQLEGTRITLVKTGERGFDFAIRTPCTPSR 905

Query: 61   WNEFDIEMATAWEALCNAYCGEAYGSSDFNALENVRDAILRMTYYCYPGIILLRYNFMPL 120
            W EFD EMA AWE++CNAYCGE YGS DF+ LE VRD+ILRM YY Y        NFMPL
Sbjct: 906  WEEFDAEMAMAWESICNAYCGENYGSMDFSTLETVRDSILRMIYYWY--------NFMPL 965

Query: 121  SRGSAVVGFVVLLGLCLAANMEFTENVPEGLQVDWEAILTFDPDSFMESVKKWLYPNLKV 180
            SRGSA VGFVVLLGL LAANMEF  N+P GLQVDWEA+L FDP+SF++SVK WLYP+LK+
Sbjct: 966  SRGSAAVGFVVLLGLLLAANMEFCGNIPRGLQVDWEAMLNFDPNSFVDSVKSWLYPSLKM 1025

Query: 181  TTSWKDYPDVASTLSTTGSVIAALSTYNN 197
            TTSWK+YPDVASTL TTGSV+AALS+Y++
Sbjct: 1026 TTSWKEYPDVASTLKTTGSVVAALSSYDD 1046

[Close]

BLAST of Spo05753.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RE25_SPIOL (Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_081470 PE=4 SV=1)

HSP 1 Score: 375.9 bits (964), Expect = 2.900e-101
Identity = 186/209 (89.00%), Postives = 187/209 (89.47%), Query Frame = 1


		  
Query: 1   MLADTCSDLHKSVGEDFWVSTWCRSMASEG-------------GERGFDFAIRTPCTPSR 60
           MLADTCSDLHKSVGEDFWVSTWCRSMASEG             GERGFDFAIRTPCTPSR
Sbjct: 750 MLADTCSDLHKSVGEDFWVSTWCRSMASEGKQLEGTRITLLKSGERGFDFAIRTPCTPSR 809

Query: 61  WNEFDIEMATAWEALCNAYCGEAYGSSDFNALENVRDAILRMTYYCYPGIILLRYNFMPL 120
           WNEFDIEMATAWEALCNAYCGEAYGSSDFNALENVRDAILRMTYY Y        NFMPL
Sbjct: 810 WNEFDIEMATAWEALCNAYCGEAYGSSDFNALENVRDAILRMTYYWY--------NFMPL 869

Query: 121 SRGSAVVGFVVLLGLCLAANMEFTENVPEGLQVDWEAILTFDPDSFMESVKKWLYPNLKV 180
           SRGSAVVGFVVLLGLCLAANMEFTENVPEGLQVDWEAILTFDPDSF+ESVKKWLYPNLKV
Sbjct: 870 SRGSAVVGFVVLLGLCLAANMEFTENVPEGLQVDWEAILTFDPDSFVESVKKWLYPNLKV 929

Query: 181 TTSWKDYPDVASTLSTTGSVIAALSTYNN 197
           TTSWKDYPDVASTLSTTGSVIAALSTYNN
Sbjct: 930 TTSWKDYPDVASTLSTTGSVIAALSTYNN 950

[Close]

BLAST of Spo05753.1 vs. UniProtKB/TrEMBL
Match: A0A0J8C7V6_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g127700 PE=4 SV=1)

HSP 1 Score: 343.6 bits (880), Expect = 1.600e-91
Identity = 165/209 (78.95%), Postives = 179/209 (85.65%), Query Frame = 1


		  
Query: 1    MLADTCSDLHKSVGEDFWVSTWCRSMASEG-------------GERGFDFAIRTPCTPSR 60
            M AD+CSDLHK+VGEDFWVSTWC SMA EG             GERGFDFAIRTPCTP+R
Sbjct: 829  MRADSCSDLHKTVGEDFWVSTWCNSMAIEGKQLEGTRITLLKTGERGFDFAIRTPCTPAR 888

Query: 61   WNEFDIEMATAWEALCNAYCGEAYGSSDFNALENVRDAILRMTYYCYPGIILLRYNFMPL 120
            WNEFD EMA AWEALCNAYCGEAYGS+DFNALENVRDAILR+ YY Y        NFMPL
Sbjct: 889  WNEFDTEMAMAWEALCNAYCGEAYGSTDFNALENVRDAILRIAYYWY--------NFMPL 948

Query: 121  SRGSAVVGFVVLLGLCLAANMEFTENVPEGLQVDWEAILTFDPDSFMESVKKWLYPNLKV 180
            SRGSAVVGFVVLLGLCLAANMEF+ ++PEG+Q+DWEAILTFDPDSF+ESVKKWLYP+LKV
Sbjct: 949  SRGSAVVGFVVLLGLCLAANMEFSGSIPEGMQIDWEAILTFDPDSFVESVKKWLYPSLKV 1008

Query: 181  TTSWKDYPDVASTLSTTGSVIAALSTYNN 197
            TTSWKDYPDVAST STTGSV+AALS+YNN
Sbjct: 1009 TTSWKDYPDVASTFSTTGSVVAALSSYNN 1029

[Close]

BLAST of Spo05753.1 vs. UniProtKB/TrEMBL
Match: A0A067KJM3_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12495 PE=4 SV=1)

HSP 1 Score: 302.0 bits (772), Expect = 5.300e-79
Identity = 144/209 (68.90%), Postives = 166/209 (79.43%), Query Frame = 1


		  
Query: 1    MLADTCSDLHKSVGEDFWVSTWCRSMASEG-------------GERGFDFAIRTPCTPSR 60
            M A TCSDL+K VGEDFW++TWC S A+EG             GE GFDFAIRTPCTPSR
Sbjct: 895  MDAKTCSDLYKVVGEDFWLATWCNSTATEGKQLEGTRITLVKMGEHGFDFAIRTPCTPSR 954

Query: 61   WNEFDIEMATAWEALCNAYCGEAYGSSDFNALENVRDAILRMTYYCYPGIILLRYNFMPL 120
            W+E+D EMA AWEA+CNAYC E YGS+D + LENVRDAILRMTYY Y        NFMPL
Sbjct: 955  WDEYDAEMAMAWEAVCNAYCSENYGSTDLDVLENVRDAILRMTYYWY--------NFMPL 1014

Query: 121  SRGSAVVGFVVLLGLCLAANMEFTENVPEGLQVDWEAILTFDPDSFMESVKKWLYPNLKV 180
            SRG+A VGF+VLLGL LAANMEF E +P+G+QVDWEAIL FDP SF++S K WLYP+LKV
Sbjct: 1015 SRGTAAVGFIVLLGLLLAANMEFEEKIPKGVQVDWEAILNFDPSSFVDSAKSWLYPSLKV 1074

Query: 181  TTSWKDYPDVASTLSTTGSVIAALSTYNN 197
            TTSWKDYPDVAST +TTGSV+AALS+Y++
Sbjct: 1075 TTSWKDYPDVASTFATTGSVVAALSSYDD 1095

[Close]

BLAST of Spo05753.1 vs. UniProtKB/TrEMBL
Match: A0A0A0KIG1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G493870 PE=4 SV=1)

HSP 1 Score: 301.2 bits (770), Expect = 9.100e-79
Identity = 145/209 (69.38%), Postives = 165/209 (78.95%), Query Frame = 1


		  
Query: 1    MLADTCSDLHKSVGEDFWVSTWCRSMASEG-------------GERGFDFAIRTPCTPSR 60
            M A +CSDL+K VGEDFW++TWC S A EG             GERGFDFAIRTPCTPSR
Sbjct: 835  MQAKSCSDLYKVVGEDFWLATWCNSTAFEGKQLEGTRITLVKTGERGFDFAIRTPCTPSR 894

Query: 61   WNEFDIEMATAWEALCNAYCGEAYGSSDFNALENVRDAILRMTYYCYPGIILLRYNFMPL 120
            W EFD EMA AWE++CNAYCGE YGS DF+ LE VRD+ILRM YY Y        NFMPL
Sbjct: 895  WEEFDAEMAMAWESICNAYCGENYGSMDFSTLETVRDSILRMIYYWY--------NFMPL 954

Query: 121  SRGSAVVGFVVLLGLCLAANMEFTENVPEGLQVDWEAILTFDPDSFMESVKKWLYPNLKV 180
            SRGSA VGFVVLLGL LAANMEF  N+P GLQVDWEA+L FDP+SF++SVK WLYP+LK+
Sbjct: 955  SRGSAAVGFVVLLGLLLAANMEFCGNIPRGLQVDWEAMLNFDPNSFVDSVKSWLYPSLKM 1014

Query: 181  TTSWKDYPDVASTLSTTGSVIAALSTYNN 197
            TTSWK+YPDVASTL TTGSV+AALS+Y++
Sbjct: 1015 TTSWKEYPDVASTLKTTGSVVAALSSYDD 1035

[Close]

BLAST of Spo05753.1 vs. UniProtKB/TrEMBL
Match: A0A061DNS7_THECC (Tetratricopeptide repeat-like superfamily protein isoform 2 OS=Theobroma cacao GN=TCM_000742 PE=4 SV=1)

HSP 1 Score: 299.3 bits (765), Expect = 3.500e-78
Identity = 142/207 (68.60%), Postives = 168/207 (81.16%), Query Frame = 1


		  
Query: 3    ADTCSDLHKSVGEDFWVSTWCRSMASEG-------------GERGFDFAIRTPCTPSRWN 62
            A +C DL++ VGEDFW++TWC S A EG             GERG+DFAIRTPCTP+RW 
Sbjct: 902  AKSCDDLYELVGEDFWLATWCNSTACEGKQLEGTRITLVKMGERGYDFAIRTPCTPARWE 961

Query: 63   EFDIEMATAWEALCNAYCGEAYGSSDFNALENVRDAILRMTYYCYPGIILLRYNFMPLSR 122
            EFD EMA AWEA+CNAYCGE YGS+DFN LENVR+AILRMTYY Y        NFMPLSR
Sbjct: 962  EFDAEMAMAWEAICNAYCGETYGSTDFNVLENVREAILRMTYYWY--------NFMPLSR 1021

Query: 123  GSAVVGFVVLLGLCLAANMEFTENVPEGLQVDWEAILTFDPDSFMESVKKWLYPNLKVTT 182
            G+AVVGF+VLLGL LAANMEFT N+P+G+QVDWEAIL FDP+SF++SVK  LYP++K+TT
Sbjct: 1022 GTAVVGFIVLLGLFLAANMEFTGNIPKGVQVDWEAILNFDPNSFVDSVKSRLYPSVKMTT 1081

Query: 183  SWKDYPDVASTLSTTGSVIAALSTYNN 197
            SWKD+PDVASTL+TTGSV+AALS Y++
Sbjct: 1082 SWKDFPDVASTLATTGSVVAALSPYDD 1100

[Close]

BLAST of Spo05753.1 vs. ExPASy Swiss-Prot
Match: SRFR1_ARATH (Suppressor of RPS4-RLD 1 OS=Arabidopsis thaliana GN=SRFR1 PE=1 SV=1)

HSP 1 Score: 281.2 bits (718), Expect = 8.800e-75
Identity = 131/210 (62.38%), Postives = 161/210 (76.67%), Query Frame = 1


		  
Query: 1    MLADTCSDLHKSVGEDFWVSTWCRSMASEG--------------GERGFDFAIRTPCTPS 60
            M A+TC +LH  VGEDFWV+TWC S  SEG              G  G+DF+IRTPCTP+
Sbjct: 851  MRAETCDELHNIVGEDFWVATWCDSTGSEGKRLEGTRITCIQKPGRLGYDFSIRTPCTPA 910

Query: 61   RWNEFDIEMATAWEALCNAYCGEAYGSSDFNALENVRDAILRMTYYCYPGIILLRYNFMP 120
            RW++FD EM +AWEALC AYCGE YGS++ +ALE VRDAILRMTYY Y        NFMP
Sbjct: 911  RWSDFDEEMTSAWEALCTAYCGENYGSTELDALETVRDAILRMTYYWY--------NFMP 970

Query: 121  LSRGSAVVGFVVLLGLCLAANMEFTENVPEGLQVDWEAILTFDPDSFMESVKKWLYPNLK 180
            L+RG+AV GFVVLLGL LAANMEFTE +P+GLQ+DWEAIL  +P SF++SVK WLYP+LK
Sbjct: 971  LARGTAVTGFVVLLGLLLAANMEFTETIPKGLQIDWEAILNVEPGSFVDSVKSWLYPSLK 1030

Query: 181  VTTSWKDYPDVASTLSTTGSVIAALSTYNN 197
            + TSW+D+ +++S  STTG+V+AALSTYN+
Sbjct: 1031 INTSWRDHTEISSAFSTTGAVVAALSTYND 1052

[Close]

BLAST of Spo05753.1 vs. ExPASy Swiss-Prot
Match: TTC13_HUMAN (Tetratricopeptide repeat protein 13 OS=Homo sapiens GN=TTC13 PE=2 SV=3)

HSP 1 Score: 77.4 bits (189), Expect = 1.900e-13
Identity = 51/158 (32.28%), Postives = 82/158 (51.90%), Query Frame = 1


		  
Query: 37  FAIRTPCTPSRWNEFDIEMATAWEALCNAYCGEAYGSSDFNALENVRDAILRMTYYCYPG 96
           F++ T  T  R   +  E+   ++ L  A       SS+F   + V + IL + YY Y  
Sbjct: 704 FSVETQTTEERTQLYHAEIDALYKDL-TAKGKVLILSSEFGEADAVCNLILSLVYYFY-- 763

Query: 97  IILLRYNFMPLSRGSAVVGFVVLLGLCLAANMEFTENVPEGLQVDWEAILTFDPDSFMES 156
                 N MPLSRGS+V+ + V++G  +A+  E    +P+G  VD+EA+     ++F + 
Sbjct: 764 ------NLMPLSRGSSVIAYSVIVGALMASGKEVAGKIPKGKLVDFEAMTAPGSEAFSKV 823

Query: 157 VKKWLYPNLK-VTTSWKDYPDVASTLSTTGSVIAALST 194
            K W+  NLK ++ S+K  P V+ T  T  S+I  L+T
Sbjct: 824 AKSWM--NLKSISPSYKTLPSVSETFPTLRSMIEVLNT 850

[Close]

BLAST of Spo05753.1 vs. TAIR (Arabidopsis)
Match: AT4G37460.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 281.2 bits (718), Expect = 4.900e-76
Identity = 131/210 (62.38%), Postives = 161/210 (76.67%), Query Frame = 1


		  
Query: 1    MLADTCSDLHKSVGEDFWVSTWCRSMASEG--------------GERGFDFAIRTPCTPS 60
            M A+TC +LH  VGEDFWV+TWC S  SEG              G  G+DF+IRTPCTP+
Sbjct: 851  MRAETCDELHNIVGEDFWVATWCDSTGSEGKRLEGTRITCIQKPGRLGYDFSIRTPCTPA 910

Query: 61   RWNEFDIEMATAWEALCNAYCGEAYGSSDFNALENVRDAILRMTYYCYPGIILLRYNFMP 120
            RW++FD EM +AWEALC AYCGE YGS++ +ALE VRDAILRMTYY Y        NFMP
Sbjct: 911  RWSDFDEEMTSAWEALCTAYCGENYGSTELDALETVRDAILRMTYYWY--------NFMP 970

Query: 121  LSRGSAVVGFVVLLGLCLAANMEFTENVPEGLQVDWEAILTFDPDSFMESVKKWLYPNLK 180
            L+RG+AV GFVVLLGL LAANMEFTE +P+GLQ+DWEAIL  +P SF++SVK WLYP+LK
Sbjct: 971  LARGTAVTGFVVLLGLLLAANMEFTETIPKGLQIDWEAILNVEPGSFVDSVKSWLYPSLK 1030

Query: 181  VTTSWKDYPDVASTLSTTGSVIAALSTYNN 197
            + TSW+D+ +++S  STTG+V+AALSTYN+
Sbjct: 1031 INTSWRDHTEISSAFSTTGAVVAALSTYND 1052

The following BLAST results are available for this feature:

BLAST of Spo05753.1 vs. NCBI nr
BLAST of Spo05753.1 vs. UniProtKB/TrEMBL
BLAST of Spo05753.1 vs. ExPASy Swiss-Prot
BLAST of Spo05753.1 vs. TAIR (Arabidopsis)

BLAST of Spo05753.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902213325\|gb\|KNA17244.1\|	4.2e-101	89.0	hypothetical protein SOVF_0814...	[more]
gi\|731337036\|ref\|XP_010679576.1\|	2.3e-91	78.9	PREDICTED: suppressor of RPS4-...	[more]
gi\|802645495\|ref\|XP_012079354.1\|	7.7e-79	68.9	PREDICTED: suppressor of RPS4-...	[more]
gi\|802645491\|ref\|XP_012079353.1\|	7.7e-79	68.9	PREDICTED: suppressor of RPS4-...	[more]
gi\|449448472\|ref\|XP_004141990.1\|	1.3e-78	69.3	PREDICTED: suppressor of RPS4-...	[more]

BLAST of Spo05753.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9RE25_SPIOL	2.9e-101	89.0	Uncharacterized protein (Fragm...	[more]
A0A0J8C7V6_BETVU	1.6e-91	78.9	Uncharacterized protein OS=Bet...	[more]
A0A067KJM3_JATCU	5.3e-79	68.9	Uncharacterized protein OS=Jat...	[more]
A0A0A0KIG1_CUCSA	9.1e-79	69.3	Uncharacterized protein OS=Cuc...	[more]
A0A061DNS7_THECC	3.5e-78	68.6	Tetratricopeptide repeat-like ...	[more]

BLAST of Spo05753.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 2


Match Name	E-value	Identity	Description
SRFR1_ARATH	8.8e-75	62.3	Suppressor of RPS4-RLD 1 OS=Ar...	[more]
TTC13_HUMAN	1.9e-13	32.2	Tetratricopeptide repeat prote...	[more]

BLAST of Spo05753.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1


Match Name	E-value	Identity	Description
AT4G37460.1	4.9e-76	62.3	Tetratricopeptide repeat (TPR)...	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009816	defense response to bacterium, incompatible interaction
biological_process	GO:0006346	methylation-dependent chromatin silencing
biological_process	GO:0000278	mitotic cell cycle
biological_process	GO:0031348	negative regulation of defense response
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
biological_process	GO:0043687	post-translational protein modification
biological_process	GO:0016246	RNA interference
biological_process	GO:0006396	RNA processing
biological_process	GO:0010048	vernalization response
cellular_component	GO:0005634	nucleus
cellular_component	GO:0048471	perinuclear region of cytoplasm
molecular_function	GO:0032947	protein-containing complex scaffold activity