Spo05816.1 (mRNA) | SpinachBase

Overview


Name	Spo05816.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	Serine-rich protein-related, putative
Location	chr1 : 50157262 .. 50157516 (-)
Sequence length	255

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCAAAATAATGAAGGGGGAATGAAAGTGGAAATTCCAGAAATGAATTTTACAAGTCCTAGAGGTTTAACAAGGCAACCAAGCAATGGAAGTGCAAAAGTGTTGAGCACTTGCCTTTGTTCTCCGACCACACATGCCGGCTCTTTTAGATGCCGGCTTCACCGAGCCCCGAGCCTCCAACGTACGAGGAGCGTTGACCATTCGGCGTCCACCAAGCCGGAAAATGCTAGTGTTACTACTAGTGACTACTAA

mRNA sequence

ATGGATCAAAATAATGAAGGGGGAATGAAAGTGGAAATTCCAGAAATGAATTTTACAAGTCCTAGAGGTTTAACAAGGCAACCAAGCAATGGAAGTGCAAAAGTGTTGAGCACTTGCCTTTGTTCTCCGACCACACATGCCGGCTCTTTTAGATGCCGGCTTCACCGAGCCCCGAGCCTCCAACGTACGAGGAGCGTTGACCATTCGGCGTCCACCAAGCCGGAAAATGCTAGTGTTACTACTAGTGACTACTAA

Coding sequence (CDS)

ATGGATCAAAATAATGAAGGGGGAATGAAAGTGGAAATTCCAGAAATGAATTTTACAAGTCCTAGAGGTTTAACAAGGCAACCAAGCAATGGAAGTGCAAAAGTGTTGAGCACTTGCCTTTGTTCTCCGACCACACATGCCGGCTCTTTTAGATGCCGGCTTCACCGAGCCCCGAGCCTCCAACGTACGAGGAGCGTTGACCATTCGGCGTCCACCAAGCCGGAAAATGCTAGTGTTACTACTAGTGACTACTAA

Protein sequence

MDQNNEGGMKVEIPEMNFTSPRGLTRQPSNGSAKVLSTCLCSPTTHAGSFRCRLHRAPSLQRTRSVDHSASTKPENASVTTSDY

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo05816	Spo05816	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo05816.1	Spo05816.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo05816.1.CDS.1	Spo05816.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo05816.1.exon.1	Spo05816.1.exon.1	exon

Homology

[Close]

BLAST of Spo05816.1 vs. NCBI nr
Match: gi|902194234|gb|KNA12491.1| (hypothetical protein SOVF_125220 [Spinacia oleracea])

HSP 1 Score: 170.6 bits (431), Expect = 1.100e-39
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 1


		  
Query: 1  MDQNNEGGMKVEIPEMNFTSPRGLTRQPSNGSAKVLSTCLCSPTTHAGSFRCRLHRAPSL 60
          MDQNNEGGMKVEIPEMNFTSPRGLTRQPSNGSAKVLSTCLCSPTTHAGSFRCRLHRAPSL
Sbjct: 1  MDQNNEGGMKVEIPEMNFTSPRGLTRQPSNGSAKVLSTCLCSPTTHAGSFRCRLHRAPSL 60

Query: 61 QRTRSVDHSASTKPENASVTTSDY 85
          QRTRSVDHSASTKPENASVTTSDY
Sbjct: 61 QRTRSVDHSASTKPENASVTTSDY 84

[Close]

BLAST of Spo05816.1 vs. NCBI nr
Match: gi|870856020|gb|KMT07723.1| (hypothetical protein BVRB_6g148430 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 115.9 bits (289), Expect = 3.300e-23
Identity = 60/82 (73.17%), Postives = 72/82 (87.80%), Query Frame = 1


		  
Query: 3  QNNEGGMKVEIPEMNFTSPRGLTRQPSNGSAKVLSTCLCSPTTHAGSFRCRLHRAPSLQR 62
          + NEGGMKVEIPEM+ +SP+GLTRQ SN SAK +S+CLCSPTTHAGSFRCRLHR+PSLQR
Sbjct: 2  ETNEGGMKVEIPEMS-SSPKGLTRQRSNASAKAISSCLCSPTTHAGSFRCRLHRSPSLQR 61

Query: 63 TRSVDHSASTKPENASVTTSDY 85
          T+SVD SA +KP+ A+  TS+Y
Sbjct: 62 TKSVDPSAFSKPD-ATDNTSNY 81

[Close]

BLAST of Spo05816.1 vs. NCBI nr
Match: gi|641863537|gb|KDO82223.1| (hypothetical protein CISIN_1g034545mg [Citrus sinensis])

HSP 1 Score: 82.4 bits (202), Expect = 4.100e-13
Identity = 46/77 (59.74%), Postives = 54/77 (70.13%), Query Frame = 1


		  
Query: 4  NNEGGMKVEIP-EMNFTSPR-GLTRQPSNGSAKVLSTCLCSPTTHAGSFRCRLHRAPSLQ 63
          +N+  MKVE P E    SP  GLTRQPS+  +     CLCSPTTHAGSFRCRLHRAPSLQ
Sbjct: 7  SNKNDMKVETPQETEMVSPTSGLTRQPSSAKSNCF-ICLCSPTTHAGSFRCRLHRAPSLQ 66

Query: 64 RTRSVDHSASTKPENAS 79
          RT+S+D   ST   +A+
Sbjct: 67 RTKSIDSKDSTSKADAT 82

[Close]

BLAST of Spo05816.1 vs. NCBI nr
Match: gi|567891475|ref|XP_006438258.1| (hypothetical protein CICLE_v10033189mg [Citrus clementina])

HSP 1 Score: 81.6 bits (200), Expect = 7.000e-13
Identity = 46/77 (59.74%), Postives = 54/77 (70.13%), Query Frame = 1


		  
Query: 4  NNEGGMKVEIP-EMNFTSPR-GLTRQPSNGSAKVLSTCLCSPTTHAGSFRCRLHRAPSLQ 63
          +N+  MKVE P E    SP  GLTRQPS+  +     CLCSPTTHAGSFRCRLHRAPSLQ
Sbjct: 7  SNKNYMKVETPQETEMVSPTSGLTRQPSSAKSNCF-ICLCSPTTHAGSFRCRLHRAPSLQ 66

Query: 64 RTRSVDHSASTKPENAS 79
          RT+S+D   ST   +A+
Sbjct: 67 RTKSIDSKDSTSKADAT 82

[Close]

BLAST of Spo05816.1 vs. NCBI nr
Match: gi|702440012|ref|XP_010023468.1| (PREDICTED: uncharacterized protein LOC104414138 [Eucalyptus grandis])

HSP 1 Score: 78.6 bits (192), Expect = 5.900e-12
Identity = 42/63 (66.67%), Postives = 49/63 (77.78%), Query Frame = 1


		  
Query: 9  MKVEIP-EMNFTSPRGLTRQPSNGSAKVLSTCLCSPTTHAGSFRCRLHRAPSLQRTRSVD 68
          +KVE+  E    +P GLTRQPS+      +TCLCSPTTHAGSFRCRLHRAPSLQRTRS+D
Sbjct: 12 LKVEVSCENENPAPSGLTRQPSSTK----NTCLCSPTTHAGSFRCRLHRAPSLQRTRSMD 70

Query: 69 HSA 71
           S+
Sbjct: 72 TSS 70

[Close]

BLAST of Spo05816.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R105_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_125220 PE=4 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 8.000e-40
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 1


		  
Query: 1  MDQNNEGGMKVEIPEMNFTSPRGLTRQPSNGSAKVLSTCLCSPTTHAGSFRCRLHRAPSL 60
          MDQNNEGGMKVEIPEMNFTSPRGLTRQPSNGSAKVLSTCLCSPTTHAGSFRCRLHRAPSL
Sbjct: 1  MDQNNEGGMKVEIPEMNFTSPRGLTRQPSNGSAKVLSTCLCSPTTHAGSFRCRLHRAPSL 60

Query: 61 QRTRSVDHSASTKPENASVTTSDY 85
          QRTRSVDHSASTKPENASVTTSDY
Sbjct: 61 QRTRSVDHSASTKPENASVTTSDY 84

[Close]

BLAST of Spo05816.1 vs. UniProtKB/TrEMBL
Match: A0A0J8C6Q3_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g148430 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 2.300e-23
Identity = 60/82 (73.17%), Postives = 72/82 (87.80%), Query Frame = 1


		  
Query: 3  QNNEGGMKVEIPEMNFTSPRGLTRQPSNGSAKVLSTCLCSPTTHAGSFRCRLHRAPSLQR 62
          + NEGGMKVEIPEM+ +SP+GLTRQ SN SAK +S+CLCSPTTHAGSFRCRLHR+PSLQR
Sbjct: 2  ETNEGGMKVEIPEMS-SSPKGLTRQRSNASAKAISSCLCSPTTHAGSFRCRLHRSPSLQR 61

Query: 63 TRSVDHSASTKPENASVTTSDY 85
          T+SVD SA +KP+ A+  TS+Y
Sbjct: 62 TKSVDPSAFSKPD-ATDNTSNY 81

[Close]

BLAST of Spo05816.1 vs. UniProtKB/TrEMBL
Match: A0A067GRK1_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034545mg PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 2.900e-13
Identity = 46/77 (59.74%), Postives = 54/77 (70.13%), Query Frame = 1


		  
Query: 4  NNEGGMKVEIP-EMNFTSPR-GLTRQPSNGSAKVLSTCLCSPTTHAGSFRCRLHRAPSLQ 63
          +N+  MKVE P E    SP  GLTRQPS+  +     CLCSPTTHAGSFRCRLHRAPSLQ
Sbjct: 7  SNKNDMKVETPQETEMVSPTSGLTRQPSSAKSNCF-ICLCSPTTHAGSFRCRLHRAPSLQ 66

Query: 64 RTRSVDHSASTKPENAS 79
          RT+S+D   ST   +A+
Sbjct: 67 RTKSIDSKDSTSKADAT 82

[Close]

BLAST of Spo05816.1 vs. UniProtKB/TrEMBL
Match: V4SUF8_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033189mg PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 4.900e-13
Identity = 46/77 (59.74%), Postives = 54/77 (70.13%), Query Frame = 1


		  
Query: 4  NNEGGMKVEIP-EMNFTSPR-GLTRQPSNGSAKVLSTCLCSPTTHAGSFRCRLHRAPSLQ 63
          +N+  MKVE P E    SP  GLTRQPS+  +     CLCSPTTHAGSFRCRLHRAPSLQ
Sbjct: 7  SNKNYMKVETPQETEMVSPTSGLTRQPSSAKSNCF-ICLCSPTTHAGSFRCRLHRAPSLQ 66

Query: 64 RTRSVDHSASTKPENAS 79
          RT+S+D   ST   +A+
Sbjct: 67 RTKSIDSKDSTSKADAT 82

[Close]

BLAST of Spo05816.1 vs. UniProtKB/TrEMBL
Match: A0A059B1G2_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H02494 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 4.100e-12
Identity = 42/63 (66.67%), Postives = 49/63 (77.78%), Query Frame = 1


		  
Query: 9  MKVEIP-EMNFTSPRGLTRQPSNGSAKVLSTCLCSPTTHAGSFRCRLHRAPSLQRTRSVD 68
          +KVE+  E    +P GLTRQPS+      +TCLCSPTTHAGSFRCRLHRAPSLQRTRS+D
Sbjct: 12 LKVEVSCENENPAPSGLTRQPSSTK----NTCLCSPTTHAGSFRCRLHRAPSLQRTRSMD 70

Query: 69 HSA 71
           S+
Sbjct: 72 TSS 70

[Close]

BLAST of Spo05816.1 vs. TAIR (Arabidopsis)
Match: AT1G67910.1 (unknown protein)

HSP 1 Score: 65.5 bits (158), Expect = 1.800e-11
Identity = 38/69 (55.07%), Postives = 47/69 (68.12%), Query Frame = 1


		  
Query: 4  NNEGGMKVEIPEMNFTS-----PRGLTRQPSNGSAKVLSTCLCSPTTHAGSFRCRLHRAP 63
          NN+G MKVEI   +F S      RGL+RQ S       + CLCSPTTH GSFRCR+HR+ 
Sbjct: 9  NNKGIMKVEI-HSHFNSAVEVGSRGLSRQTS----MTKTNCLCSPTTHPGSFRCRIHRSL 68

Query: 64 SLQRTRSVD 68
          SLQRT+S++
Sbjct: 69 SLQRTKSIE 72

[Close]

BLAST of Spo05816.1 vs. TAIR (Arabidopsis)
Match: AT1G24577.1 (unknown protein)

HSP 1 Score: 57.0 bits (136), Expect = 6.500e-9
Identity = 34/78 (43.59%), Postives = 48/78 (61.54%), Query Frame = 1


		  
Query: 4  NNEGGMKVEIPEMNFTSPRGLTRQPSNGSAKVLSTCLCSPTTHAGSFRCRLHRAPSLQRT 63
          N++G M+ E   +      GL+RQ S       + C+CSPTTH GSF+C+LHR PSLQR 
Sbjct: 2  NDKGNMETEA-SIAAMGLGGLSRQTSITK----TICICSPTTHPGSFKCKLHRTPSLQRN 61

Query: 64 RSVD----HSASTKPENA 78
          +SV+     S  TKP+++
Sbjct: 62 KSVETNILQSLMTKPDHS 74

[Close]

BLAST of Spo05816.1 vs. TAIR (Arabidopsis)
Match: AT5G55980.1 (serine-rich protein-related)

HSP 1 Score: 51.2 bits (121), Expect = 3.600e-7
Identity = 32/77 (41.56%), Postives = 38/77 (49.35%), Query Frame = 1


		  
Query: 7   GGMKVEIPEMNFTSPRGLTRQPSNGSAKVLSTCLCSPTTHAGSFRCRLHRAPSLQRTRSV 66
           G   VE    +  SP  L R  S+        CLCSPTTHAGSFRCR HR  SL R  S+
Sbjct: 33  GSSTVESKSQDNNSP-SLKRWRSSSGKSTRLNCLCSPTTHAGSFRCRYHRVDSLTRAGSI 92

Query: 67  DHSASTKPENASVTTSD 84
             + +    + S   SD
Sbjct: 93  GSNLAVLLSSKSSRFSD 108

The following BLAST results are available for this feature:

BLAST of Spo05816.1 vs. NCBI nr
BLAST of Spo05816.1 vs. UniProtKB/TrEMBL
BLAST of Spo05816.1 vs. ExPASy Swiss-Prot
BLAST of Spo05816.1 vs. TAIR (Arabidopsis)

BLAST of Spo05816.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902194234\|gb\|KNA12491.1\|	1.1e-39	100.	hypothetical protein SOVF_1252...	[more]
gi\|870856020\|gb\|KMT07723.1\|	3.3e-23	73.1	hypothetical protein BVRB_6g14...	[more]
gi\|641863537\|gb\|KDO82223.1\|	4.1e-13	59.7	hypothetical protein CISIN_1g0...	[more]
gi\|567891475\|ref\|XP_006438258.1\|	7.0e-13	59.7	hypothetical protein CICLE_v10...	[more]
gi\|702440012\|ref\|XP_010023468.1\|	5.9e-12	66.6	PREDICTED: uncharacterized pro...	[more]

BLAST of Spo05816.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9R105_SPIOL	8.0e-40	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8C6Q3_BETVU	2.3e-23	73.1	Uncharacterized protein OS=Bet...	[more]
A0A067GRK1_CITSI	2.9e-13	59.7	Uncharacterized protein OS=Cit...	[more]
V4SUF8_9ROSI	4.9e-13	59.7	Uncharacterized protein OS=Cit...	[more]
A0A059B1G2_EUCGR	4.1e-12	66.6	Uncharacterized protein OS=Euc...	[more]

BLAST of Spo05816.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Spo05816.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 3


Match Name	E-value	Identity	Description
AT1G67910.1	1.8e-11	55.0	unknown protein	[more]
AT1G24577.1	6.5e-9	43.5	unknown protein	[more]
AT5G55980.1	3.6e-7	41.5	serine-rich protein-related	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33132	FAMILY NOT NAMED	coord: 4..83 score: 3.4
None	No IPR available	PANTHER	PTHR33132:SF8	SUBFAMILY NOT NAMED	coord: 4..83 score: 3.4

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009790	embryo development
biological_process	GO:0009755	hormone-mediated signaling pathway
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005634	nucleus