Spo05863.1 (mRNA)

Overview
NameSpo05863.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
Description40S ribosomal protein S28
Locationchr1 : 49291550 .. 49295181 (-)
Sequence length739
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTAGGCAAAGTACGTCTTGGAGATGATGTTAGCTTGTATCTAAATCAACTTCTAAGCCAACATTGATACTACCACAATTGACTTATCACTTCTTGGCAGCAAATCGATCTTGAAACCAGATGCTTTCCCACAAAAAACTATTTATTTCCCTCCAGGAAACTTGAGTTGGATCTGGGATTGTTGGTTGGTAGTGTTCTTAATTTCGTATAAGAGTTAGAGAGGCACGTGATTTTTTGTTTCACCCGCACAATATATTGGAGGGAAGCATGAGTCGATGGCCGAAAAGTTGACAATTAGGCCGGATTATTGCTCTAAGGTGCCAATTTTAATACAATTTTTTAATTCAAGATACTATTTTACAAAACTGAACAAATAAGGTCGTTCACACAGTGAGGCAAAAAAAAATACTTCGTATTTTGACAATTTCTCTAAATGCATTTAGTTAAATTTTTCTTGAAGAAGAAGGATGTTTCTGTATATTTTGAGTAACTAGAAAGCTTTCCTTTGAAATCGTAAAATAAAATTGTAATCAAAGAGAGAATCAATGCACGAAATCAGATTAATTGCGCCAACTAATGAACGGTTACAAACGCTACCGCCGAACACGCCCTTGGTCCAAAAAAGTATGCACACCGCGCACATGTCATGAACACGACCAACACTGGACGTCGGTGACCTGTGAGGGGATGTCCCTTTCTAGTCCAAAACACCAATGGACGTGCTCCGAAGTATATTTTTCACATGCCCATATTTAAACAAGTTAAAGGTGCTTTTTTCTATCAATATAGGGCATATATTCCCACCAAATAGTACGGAATAATCTTACAACATGGGTTTTTCTCCAACTTTTGCATTGTTTATAACAAACACGACATAACACAAGCAAAATCAAACATGTAAAAGGCGGTTTGGTGACAAAGGTTTATGATATACTACATATTTAATTTAAATGGGTTAACACGATATCACAATATGCTACATATAATTTAATGTCAATTATTTCCGGCATTAATTAAACAGATCAACACAAAACATTAATTGCAAGGATCAATACGATAAACCACGTGTTATTTATGTTAAAATTTCCGGATACGATTAACTAAAAAGGTCAACACCATATCCAACACGAACACGAGTACGACACGACACGTTTGTCAATTCTATCGAGTATCGACACTTTGTTGTCACGTGCCGTTTTTACTCCGTAACGGTTGCACATAGACTTAAACGGAGTAGATACTTAAACGGAGTAGGTATTGTAGATTGCGCCTAAACCCTAACCCTTTCTTCTTCATAAAACCTTCGCGCCGTTCTTCTCTTGGATTCCTCTCGCTTTCTCTCTCCTCAAGCTGCAAATTCAGGTAATTTCTTCAACATTCATCCTCAATTTATCATTCCTTTAACAATCGATTCTATATTCTCTCTGTTCAATTCATGTATATCAATTTGTTTAAGAATCTGCTTGTATTCTTGAATCGAATAAATGCATTGATTTGATAAATTTTGTGTTTGCTATTCTTTTGTTTGGGTTAATTTCTACAATCTGCAATTACTACTCTGGCGTGATTGTTAAAATATTATCATAATATCTTCATCCTTATTCATTCCCATTTTCTGAAGAAAAAAAATCACTTTTTTGTTTTGTTCTTGGTTTTAATTTGATTATTTCAGTGGTTATTTTTCTTTTAATTTGAGAAATAAATAGATGGGCAATGATGATAAATGCTTATTAATCCCAGCTCATTATGAGGTTTCCTTTGTGGAGATCAGGGAATTGAACTTTATCCAATATTTATCTGAGCTTTTTAGTCCCCTTTTTCAATTTTTTTTTGGAATTGATCTTACGAAATTTGGAAAATTTTAATTAGGTATTTTGTTTGTTGAAATCCCAATGATGCAATTTTATACCATGCTAATTCTGATCAACCCATGATCGATTATTTTTCACTATTGATTAGCTGAGGGCTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTGAATTTGTTTTTGATCTTTTAGTTGAGAAAATCTTCGATTTGGAAAAGATGAAAGAAAACTGAGTATTTTTGTGAAGTTGTACTAGTAGAAAAGGATCTGCTTTAAATTATAGCGCATTGATAACTTGATACACTGTTGTTTATGCGTGCCTGTTTACTTGGTATCTACTGCTTTGATTAGCAATGCCTCAATCCATGATTCGATGTTTTGGGAATTCGGGAGGTAATGAGAACAGTTTCAATTCCTACAAAACTCGAATAATAGGTAACCTTGCCCAATCTATTAGATGAAGACGAACTATAATGGGTACTTTATTTCATACACTCTTGTGCCCAGCTAGAGTGTTACTCTGTAAATCAATATACATGCATTCAGATTGTAAAACACCAATTTATGTGTAATTCAATGTTACTATTGCATAGGTTCGACTACCTAAGAAGTGTAGGATGTTGGTAGGGAGAAGAAGTTAAGGAACACCCTTCTGTAATCTAAGTTGGAAAAACTGTTTATATGATCCAAATATGTTATGTTCTTACTGAGTAGTCTGAATTATTTTCTGGTAAATGCGAAGGCCTTCCTTTGATGCAACAACCTTGTCCTTTCTCAGCTTTAAATTGAATGCTCTTATTTCCATATTACTAATATGATATCTACAAGTTGTTGTATGAGTGAACAATATGTTGTTATTTTAAATTGTTGGTTTAGACTGAAGTTAAATCCATTTCAATTGCAGAATGGAGTCTCAGATCAAGCATGCTGTAGTTATTAAGTGCATGGGCCGCACCGGATCAAGGGGGCAAGTGACCCAAGTCAGAGTTAAGTTTTTGGATGACCAAAACCGTTTCATCATGAGGAACGTCAAGGGACCCGTCAGAGAGGGAGACATTCTTACCCTCCTCGAGTCTGAGAGAGAAGCTAGGAGACTTAGATGAAGTACCCGCCTTGTTGCTGAAGGCTGCAGCTATATTTCTGTTTTGGCTTCGGTTATGGTTTTTGCCTGAGTTAGATTTTGTTATTCTAAGTGTCAATTATTGGTTTGTCAAGACTTCTTTATGGATTGTCCTTTGAAGTATGATTTTGTGGTATAATACTGAGATTTTGCAAGGAAACATATTATTGTGGTTGTAGACAGTTATCCTATTGCTTTTATCATTGATGTTTGTATGCTCTTCAGCTCAAACTTTTTCCCTCTCTTGTTATAGGCCTCAAAGTTTTGGTATTTCTGATTTATGGCCTTTCACTCTTCAAATGTGCTCCCTATGTTCTTAAAAGATTACCACATTGTATTTTTTTGGTTAAACTTTGAAAACTTTGATTATGAATACTCATCGGGCT

mRNA sequence

ATGTTAGGCAAAGTACGTCTTGGAGATGATGTTAGCTTATTGCGCCTAAACCCTAACCCTTTCTTCTTCATAAAACCTTCGCGCCGTTCTTCTCTTGGATTCCTCTCGCTTTCTCTCTCCTCAAGCTGCAAATTCAGAATGGAGTCTCAGATCAAGCATGCTGTAGTTATTAAGTGCATGGGCCGCACCGGATCAAGGGGGCAAGTGACCCAAGTCAGAGTTAAGTTTTTGGATGACCAAAACCGTTTCATCATGAGGAACGTCAAGGGACCCGTCAGAGAGGGAGACATTCTTACCCTCCTCGAGTCTGAGAGAGAAGCTAGGAGACTTAGATGAAGTACCCGCCTTGTTGCTGAAGGCTGCAGCTATATTTCTGTTTTGGCTTCGGTTATGGTTTTTGCCTGAGTTAGATTTTGTTATTCTAAGTGTCAATTATTGGTTTGTCAAGACTTCTTTATGGATTGTCCTTTGAAGTATGATTTTGTGGTATAATACTGAGATTTTGCAAGGAAACATATTATTGTGGTTGTAGACAGTTATCCTATTGCTTTTATCATTGATGTTTGTATGCTCTTCAGCTCAAACTTTTTCCCTCTCTTGTTATAGGCCTCAAAGTTTTGGTATTTCTGATTTATGGCCTTTCACTCTTCAAATGTGCTCCCTATGTTCTTAAAAGATTACCACATTGTATTTTTTTGGTTAAACTTTGAAAACTTTGATTATGAATACTCATCGGGCT

Coding sequence (CDS)

ATGTTAGGCAAAGTACGTCTTGGAGATGATGTTAGCTTATTGCGCCTAAACCCTAACCCTTTCTTCTTCATAAAACCTTCGCGCCGTTCTTCTCTTGGATTCCTCTCGCTTTCTCTCTCCTCAAGCTGCAAATTCAGAATGGAGTCTCAGATCAAGCATGCTGTAGTTATTAAGTGCATGGGCCGCACCGGATCAAGGGGGCAAGTGACCCAAGTCAGAGTTAAGTTTTTGGATGACCAAAACCGTTTCATCATGAGGAACGTCAAGGGACCCGTCAGAGAGGGAGACATTCTTACCCTCCTCGAGTCTGAGAGAGAAGCTAGGAGACTTAGATGA

Protein sequence

MLGKVRLGDDVSLLRLNPNPFFFIKPSRRSSLGFLSLSLSSSCKFRMESQIKHAVVIKCMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTLLESEREARRLR
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo05863Spo05863gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo05863.1Spo05863.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo05863.1.CDS.3Spo05863.1.CDS.3CDS
Spo05863.1.CDS.2Spo05863.1.CDS.2CDS
Spo05863.1.CDS.1Spo05863.1.CDS.1CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo05863.1.utr3p.1Spo05863.1.utr3p.1three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo05863.1.exon.3Spo05863.1.exon.3exon
Spo05863.1.exon.2Spo05863.1.exon.2exon
Spo05863.1.exon.1Spo05863.1.exon.1exon


Homology
[Close]
BLAST of Spo05863.1 vs. NCBI nr
Match: gi|703110452|ref|XP_010099593.1| (Nicotinamide mononucleotide adenylyltransferase 1 [Morus notabilis])

HSP 1 Score: 129.4 bits (324), Expect = 3.900e-27
Identity = 65/71 (91.55%), Postives = 68/71 (95.77%), Query Frame = 1 

		  

Query: 41  SSCKFRMESQIKHAVVIKCMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTL 100
           SS + RMESQ+KHAVV+K MGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTL
Sbjct: 205 SSTRVRMESQVKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTL 264

Query: 101 LESEREARRLR 112
           LESEREARRLR
Sbjct: 265 LESEREARRLR 275
[Close]
BLAST of Spo05863.1 vs. NCBI nr
Match: gi|731314092|ref|XP_010684187.1| (PREDICTED: 40S ribosomal protein S28 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 129.4 bits (324), Expect = 3.900e-27
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 1 

		  

Query: 47  MESQIKHAVVIKCMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTLLESERE 106
           MESQIKHAVVIKCMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTLLESERE
Sbjct: 1   MESQIKHAVVIKCMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTLLESERE 60

Query: 107 ARRLR 112
           ARRLR
Sbjct: 61  ARRLR 65
[Close]
BLAST of Spo05863.1 vs. NCBI nr
Match: gi|703132274|ref|XP_010105085.1| (40S ribosomal protein S28 [Morus notabilis])

HSP 1 Score: 128.6 bits (322), Expect = 6.600e-27
Identity = 69/86 (80.23%), Postives = 74/86 (86.05%), Query Frame = 1 

		  

Query: 30  SSLGFL----SLSLSSSCKFRMESQIKHAVVIKCMGRTGSRGQVTQVRVKFLDDQNRFIM 89
           S  GF+     LS S++   RMESQ+KHAVV+K MGRTGSRGQVTQVRVKFLDDQNRFIM
Sbjct: 70  SQTGFVIATSELSESAAKSTRMESQVKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIM 129

Query: 90  RNVKGPVREGDILTLLESEREARRLR 112
           RNVKGPVREGDILTLLESEREARRLR
Sbjct: 130 RNVKGPVREGDILTLLESEREARRLR 155
[Close]
BLAST of Spo05863.1 vs. NCBI nr
Match: gi|567874751|ref|XP_006429965.1| (hypothetical protein CICLE_v10013157mg [Citrus clementina])

HSP 1 Score: 126.7 bits (317), Expect = 2.500e-26
Identity = 67/75 (89.33%), Postives = 70/75 (93.33%), Query Frame = 1 

		  

Query: 37  LSLSSSCKFRMESQIKHAVVIKCMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGD 96
           LSL +S   RM+SQIKHAVV+K MGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGD
Sbjct: 41  LSLLAS-SLRMDSQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGD 100

Query: 97  ILTLLESEREARRLR 112
           ILTLLESEREARRLR
Sbjct: 101 ILTLLESEREARRLR 114
[Close]
BLAST of Spo05863.1 vs. NCBI nr
Match: gi|703087605|ref|XP_010093316.1| (40S ribosomal protein S28 [Morus notabilis])

HSP 1 Score: 126.7 bits (317), Expect = 2.500e-26
Identity = 63/66 (95.45%), Postives = 65/66 (98.48%), Query Frame = 1 

		  

Query: 46  RMESQIKHAVVIKCMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTLLESER 105
           RMESQ+KHAVV+K MGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTLLESER
Sbjct: 21  RMESQVKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTLLESER 80

Query: 106 EARRLR 112
           EARRLR
Sbjct: 81  EARRLR 86
[Close]
BLAST of Spo05863.1 vs. UniProtKB/TrEMBL
Match: F6HLE9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0007g07210 PE=3 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 2.100e-27
Identity = 77/129 (59.69%), Postives = 87/129 (67.44%), Query Frame = 1 

		  

Query: 3   GKVRLGDDVSLL-----------------RLNPNPFFFIKPSRRSSLGFLSLSLSSSCKF 62
           G VR GD ++LL                 R    P FF   S  + + FLS + S + + 
Sbjct: 110 GPVREGDILTLLESEREARRLRVPLLRSRRKCSKPLFFSSSSLFAEIAFLSGNSSPASRT 169

Query: 63  ---RMESQIKHAVVIKCMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTLLE 112
              +MES +KHAVV+K MGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTLLE
Sbjct: 170 GLCKMESGVKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTLLE 229
[Close]
BLAST of Spo05863.1 vs. UniProtKB/TrEMBL
Match: A0A0J8D562_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_1g013140 PE=3 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 2.700e-27
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 1 

		  

Query: 47  MESQIKHAVVIKCMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTLLESERE 106
           MESQIKHAVVIKCMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTLLESERE
Sbjct: 1   MESQIKHAVVIKCMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTLLESERE 60

Query: 107 ARRLR 112
           ARRLR
Sbjct: 61  ARRLR 65
[Close]
BLAST of Spo05863.1 vs. UniProtKB/TrEMBL
Match: W9RZ99_9ROSA (Nicotinamide-nucleotide adenylyltransferase OS=Morus notabilis GN=L484_004025 PE=3 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 2.700e-27
Identity = 65/71 (91.55%), Postives = 68/71 (95.77%), Query Frame = 1 

		  

Query: 41  SSCKFRMESQIKHAVVIKCMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTL 100
           SS + RMESQ+KHAVV+K MGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTL
Sbjct: 205 SSTRVRMESQVKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTL 264

Query: 101 LESEREARRLR 112
           LESEREARRLR
Sbjct: 265 LESEREARRLR 275
[Close]
BLAST of Spo05863.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RBJ3_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_013530 PE=3 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 2.700e-27
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 1 

		  

Query: 47  MESQIKHAVVIKCMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTLLESERE 106
           MESQIKHAVVIKCMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTLLESERE
Sbjct: 1   MESQIKHAVVIKCMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTLLESERE 60

Query: 107 ARRLR 112
           ARRLR
Sbjct: 61  ARRLR 65
[Close]
BLAST of Spo05863.1 vs. UniProtKB/TrEMBL
Match: W9SEX7_9ROSA (40S ribosomal protein S28 OS=Morus notabilis GN=L484_012438 PE=3 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 4.600e-27
Identity = 69/86 (80.23%), Postives = 74/86 (86.05%), Query Frame = 1 

		  

Query: 30  SSLGFL----SLSLSSSCKFRMESQIKHAVVIKCMGRTGSRGQVTQVRVKFLDDQNRFIM 89
           S  GF+     LS S++   RMESQ+KHAVV+K MGRTGSRGQVTQVRVKFLDDQNRFIM
Sbjct: 70  SQTGFVIATSELSESAAKSTRMESQVKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIM 129

Query: 90  RNVKGPVREGDILTLLESEREARRLR 112
           RNVKGPVREGDILTLLESEREARRLR
Sbjct: 130 RNVKGPVREGDILTLLESEREARRLR 155
[Close]
BLAST of Spo05863.1 vs. ExPASy Swiss-Prot
Match: RS28_MAIZE (40S ribosomal protein S28 OS=Zea mays GN=RPS28 PE=3 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 2.300e-24
Identity = 57/65 (87.69%), Postives = 61/65 (93.85%), Query Frame = 1 

		  

Query: 47  MESQIKHAVVIKCMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTLLESERE 106
           M++Q+K AVV+K MGRTGSRGQVTQVRVKFLDDQNR IMRNVKGPV EGDILTLLESERE
Sbjct: 1   MDTQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVCEGDILTLLESERE 60

Query: 107 ARRLR 112
           ARRLR
Sbjct: 61  ARRLR 65
[Close]
BLAST of Spo05863.1 vs. ExPASy Swiss-Prot
Match: RS282_ARATH (40S ribosomal protein S28-2 OS=Arabidopsis thaliana GN=RPS28C PE=3 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 8.900e-24
Identity = 57/65 (87.69%), Postives = 61/65 (93.85%), Query Frame = 1 

		  

Query: 47  MESQIKHAVVIKCMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTLLESERE 106
           M+SQIKHAVV+K MGRTGSRGQVTQVRVKF D  +RFIMRNVKGPVREGD+LTLLESERE
Sbjct: 1   MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFTDS-DRFIMRNVKGPVREGDVLTLLESERE 60

Query: 107 ARRLR 112
           ARRLR
Sbjct: 61  ARRLR 64
[Close]
BLAST of Spo05863.1 vs. ExPASy Swiss-Prot
Match: RS281_ARATH (40S ribosomal protein S28-1 OS=Arabidopsis thaliana GN=RPS28A PE=3 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 1.500e-23
Identity = 57/65 (87.69%), Postives = 61/65 (93.85%), Query Frame = 1 

		  

Query: 47  MESQIKHAVVIKCMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTLLESERE 106
           M+SQIKHAVV+K MGRTGSRGQVTQVRVKF D  +R+IMRNVKGPVREGDILTLLESERE
Sbjct: 1   MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFTDS-DRYIMRNVKGPVREGDILTLLESERE 60

Query: 107 ARRLR 112
           ARRLR
Sbjct: 61  ARRLR 64
[Close]
BLAST of Spo05863.1 vs. ExPASy Swiss-Prot
Match: RS28_DANRE (40S ribosomal protein S28 OS=Danio rerio GN=rps28 PE=3 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 3.900e-19
Identity = 48/61 (78.69%), Postives = 54/61 (88.52%), Query Frame = 1 

		  

Query: 51  IKHAVVIKCMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTLLESEREARRL 110
           IK A V K +GRTGS+GQ TQVRV+F+DD NR I+RNVKGPVREGD+LTLLESEREARRL
Sbjct: 9   IKLARVTKVLGRTGSQGQCTQVRVEFMDDSNRSIIRNVKGPVREGDVLTLLESEREARRL 68

Query: 111 R 112
           R
Sbjct: 69  R 69
[Close]
BLAST of Spo05863.1 vs. ExPASy Swiss-Prot
Match: RS28_ICTPU (40S ribosomal protein S28 OS=Ictalurus punctatus GN=rps28 PE=3 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 3.900e-19
Identity = 48/61 (78.69%), Postives = 54/61 (88.52%), Query Frame = 1 

		  

Query: 51  IKHAVVIKCMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTLLESEREARRL 110
           IK A V K +GRTGS+GQ TQVRV+F+DD NR I+RNVKGPVREGD+LTLLESEREARRL
Sbjct: 9   IKLARVTKVLGRTGSQGQCTQVRVEFMDDSNRSIIRNVKGPVREGDVLTLLESEREARRL 68

Query: 111 R 112
           R
Sbjct: 69  R 69
[Close]
BLAST of Spo05863.1 vs. TAIR (Arabidopsis)
Match: AT5G64140.1 (ribosomal protein S28)

HSP 1 Score: 110.9 bits (276), Expect = 5.000e-25
Identity = 57/65 (87.69%), Postives = 61/65 (93.85%), Query Frame = 1 

		  

Query: 47  MESQIKHAVVIKCMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTLLESERE 106
           M+SQIKHAVV+K MGRTGSRGQVTQVRVKF D  +RFIMRNVKGPVREGD+LTLLESERE
Sbjct: 1   MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFTDS-DRFIMRNVKGPVREGDVLTLLESERE 60

Query: 107 ARRLR 112
           ARRLR
Sbjct: 61  ARRLR 64
[Close]
BLAST of Spo05863.1 vs. TAIR (Arabidopsis)
Match: AT3G10090.1 (Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 110.2 bits (274), Expect = 8.500e-25
Identity = 57/65 (87.69%), Postives = 61/65 (93.85%), Query Frame = 1 

		  

Query: 47  MESQIKHAVVIKCMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTLLESERE 106
           M+SQIKHAVV+K MGRTGSRGQVTQVRVKF D  +R+IMRNVKGPVREGDILTLLESERE
Sbjct: 1   MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFTDS-DRYIMRNVKGPVREGDILTLLESERE 60

Query: 107 ARRLR 112
           ARRLR
Sbjct: 61  ARRLR 64
[Close]
BLAST of Spo05863.1 vs. TAIR (Arabidopsis)
Match: AT5G03850.1 (Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 110.2 bits (274), Expect = 8.500e-25
Identity = 57/65 (87.69%), Postives = 61/65 (93.85%), Query Frame = 1 

		  

Query: 47  MESQIKHAVVIKCMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTLLESERE 106
           M+SQIKHAVV+K MGRTGSRGQVTQVRVKF D  +R+IMRNVKGPVREGDILTLLESERE
Sbjct: 1   MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFTDS-DRYIMRNVKGPVREGDILTLLESERE 60

Query: 107 ARRLR 112
           ARRLR
Sbjct: 61  ARRLR 64
The following BLAST results are available for this feature:
BLAST of Spo05863.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|703110452|ref|XP_010099593.1|3.9e-2791.5Nicotinamide mononucleotide ad... [more]
gi|731314092|ref|XP_010684187.1|3.9e-27100.PREDICTED: 40S ribosomal prote... [more]
gi|703132274|ref|XP_010105085.1|6.6e-2780.240S ribosomal protein S28 [Mor... [more]
gi|567874751|ref|XP_006429965.1|2.5e-2689.3hypothetical protein CICLE_v10... [more]
gi|703087605|ref|XP_010093316.1|2.5e-2695.440S ribosomal protein S28 [Mor... [more]
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BLAST of Spo05863.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
F6HLE9_VITVI2.1e-2759.6Putative uncharacterized prote... [more]
A0A0J8D562_BETVU2.7e-27100.Uncharacterized protein OS=Bet... [more]
W9RZ99_9ROSA2.7e-2791.5Nicotinamide-nucleotide adenyl... [more]
A0A0K9RBJ3_SPIOL2.7e-27100.Uncharacterized protein OS=Spi... [more]
W9SEX7_9ROSA4.6e-2780.240S ribosomal protein S28 OS=M... [more]
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BLAST of Spo05863.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RS28_MAIZE2.3e-2487.640S ribosomal protein S28 OS=Z... [more]
RS282_ARATH8.9e-2487.640S ribosomal protein S28-2 OS... [more]
RS281_ARATH1.5e-2387.640S ribosomal protein S28-1 OS... [more]
RS28_DANRE3.9e-1978.640S ribosomal protein S28 OS=D... [more]
RS28_ICTPU3.9e-1978.640S ribosomal protein S28 OS=I... [more]
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BLAST of Spo05863.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 3
Match NameE-valueIdentityDescription
AT5G64140.15.0e-2587.6ribosomal protein S28[more]
AT3G10090.18.5e-2587.6Nucleic acid-binding, OB-fold-... [more]
AT5G03850.18.5e-2587.6Nucleic acid-binding, OB-fold-... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000289Ribosomal protein S28ePRODOMPD005541coord: 47..92
score: 1.0
IPR000289Ribosomal protein S28eHAMAPMF_00292Ribosomal_S28ecoord: 47..111
score: 20
IPR000289Ribosomal protein S28ePANTHERPTHR1076940S RIBOSOMAL PROTEIN S28coord: 47..111
score: 9.5
IPR000289Ribosomal protein S28ePFAMPF01200Ribosomal_S28ecoord: 50..110
score: 1.8
IPR012340Nucleic acid-binding, OB-foldGENE3D2.40.50.140coord: 47..111
score: 9.9
IPR012340Nucleic acid-binding, OB-foldunknownSSF50249Nucleic acid-binding proteinscoord: 47..111
score: 1.54

GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
biological_process GO:0042254 ribosome biogenesis
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome