Spo05879.1 (mRNA) | SpinachBase

Overview


Name	Spo05879.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	Unknown protein
Location	chr1 : 48938239 .. 48939979 (-)
Sequence length	389

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AGGAATGTGGAAGATGTAGGAGGGGCTGGGAACAAGTCAAAGATAAACAAGGAAACCAGTGATGGTGTTAATGCAATTCAAGTCAAGAATGATACATAAAGCTTTGACGGAAGTAAAGAAAACAAGAAAAACAAGAAGAGAGTCAAGCTTGAAAACTGTGGAAAACAATGGTGATGAGCAAAACAATGGTGATGAGCCAAACAATGGGACTTGGGATGATTAAGGTTATAGGACTTATGGTAATACTGTGAGTTTTGATGAATTTGCAAAAAAAGGCCCTCCTTTTGCTCATTTCTATGTTGGTTTTGTTCAATATTGGTATCTTGGAGTTATAGATGATGGGCAATAGCTGAATTATTGGGGAATTTCTGGGTTATTAGTGAATTTATGCTCTTTTGATTGCAATTACATTGATGAGTTTCGGAAGTGATGAACATTAGCTGCGTTTTTCGCGAAAATTCGGATTATTATTGAATTCAAGTTGGTTTAATCTAGGACAAGAATATTATTGGTAGGAATCCATGGCCCTAAAGTGGGAAATATTGACATGGTTAGAGGTTTTAGGTAGAAGTGGGAAATATTGACATGGTTAGAGGTTTTAGGTAGAAGTAGGAAATATTGACATGGTTAGAGGTTTTAGGTAGTCATTGTGATTTTGTTAGGATTATATTATCAAGCGGTTAGTGAAGAGGGGCTCCATTAGTGTAACTTAGTATTATACAAACGATTATTAAGGAGTATATGTAGCAATAAACCATTGTTCATGCGAATGGAGCTAATGAAAGTAGTTAATTGCACGAGGCTAAAATGTTGTTGCCGATCCTTATTCGGATAGGAGGTCTTTCTTGGTTTTTTTCCCATCTAGGAACCTTGCCATTATTCCTCGTATTACTTTGGTAGTACGAGTGTATTGAAATATCAACTGATCAAGCTAGAGAAATTAGAAAATGTATATATACTTCTTGAATTGAAATGAATAAATCATAAAGTTTCAATAGTTTCACGAATCCTGACAAAATTCGTTTACATAGTTATGGTGGCTCATCATTTGATGCAAGGAGCTTCTTTGCATTCACACAATACAATAGTACTTGTGCATGCACTAGTTATTCCTTTTGTATAGTTTGTACTTTGTAGAACCCGTCTTAGTCATATAGTAAGAAGCAAGGAATGAGGTTAGTAGAGCGGATTGTTGGTGTAAGACTCTTGTATCCAACCTTCTACACTGATGAAAGGACTGTTTTTTTCATTAGAGTGAATGATCCTATTTGTGATTTCCTTGATGTCAATGAATAGGAGTGTGAAAGGGTAATACGTAGTTTCATGGAGATGGCATTCTTATTCATTTTTCCAGCGAAGAAGCTGAAGCTCCATAGAAATGATTGTTCTTTGTTTACAAAATTGGATTAAGTTGCTTTATGATCATGATGCAACCATGACCTACATCAATTTGAAATTATAAGTAGCTTGAGAGACATTCTTAAAGCGATGATTTTAATATAATTATTAACTTCCATAACTGTTTCTTCTGACCTTAAACATCCATTTTAACAGGCACCCCTGAGGGGCTTTCTTAATCTTCAAAGAATAGGACAAATTCAGCGCCAGTATACTGTTACAAACTTACAACTGGGGTTCTGGCTATAGCAGCTTGTTCAACACCCAGGCTGCTTCAACATCTAAAACCCCTCAGCCTCCACGCCTTTCTCCTCCTCAAAGAAAAGTCATTTCGGTGGCCTGA

mRNA sequence

AGGAATGTGGAAGATGTAGGAGGGGCTGGGAACAAGTCAAAGATAAACAAGGAAACCAGTGATGGTGTTAATGCAATTCAAGTCAAGAATGATACATAAAGCTTTGACGGAAGTAAAGAAAACAAGAAAAACAAGAAGAGAGTCAAGCTTGAAAACTGTGGAAAACAATGGTGATGAGCAAAACAATGGTGATGAGCCAAACAATGGGACTTGGGATGATTAAGGTTATAGGACTTATGGACAAATTCAGCGCCAGTATACTGTTACAAACTTACAACTGGGGTTCTGGCTATAGCAGCTTGTTCAACACCCAGGCTGCTTCAACATCTAAAACCCCTCAGCCTCCACGCCTTTCTCCTCCTCAAAGAAAAGTCATTTCGGTGGCCTGA

Coding sequence (CDS)

ATGGTGATGAGCAAAACAATGGTGATGAGCCAAACAATGGGACTTGGGATGATTAAGGTTATAGGACTTATGGACAAATTCAGCGCCAGTATACTGTTACAAACTTACAACTGGGGTTCTGGCTATAGCAGCTTGTTCAACACCCAGGCTGCTTCAACATCTAAAACCCCTCAGCCTCCACGCCTTTCTCCTCCTCAAAGAAAAGTCATTTCGGTGGCCTGA

Protein sequence

MVMSKTMVMSQTMGLGMIKVIGLMDKFSASILLQTYNWGSGYSSLFNTQAASTSKTPQPPRLSPPQRKVISVA

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo05879	Spo05879	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo05879.1	Spo05879.1-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo05879.1.utr5p.1	Spo05879.1.utr5p.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo05879.1.CDS.2	Spo05879.1.CDS.2	CDS
Spo05879.1.CDS.1	Spo05879.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo05879.1.exon.2	Spo05879.1.exon.2	exon
Spo05879.1.exon.1	Spo05879.1.exon.1	exon

Homology

The following BLAST results are available for this feature:

BLAST of Spo05879.1 vs. NCBI nr
BLAST of Spo05879.1 vs. UniProtKB/TrEMBL
BLAST of Spo05879.1 vs. ExPASy Swiss-Prot
BLAST of Spo05879.1 vs. TAIR (Arabidopsis)

BLAST of Spo05879.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo05879.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo05879.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo05879.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description