Spo05994.1 (mRNA)

Overview
NameSpo05994.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
Locationchr1 : 48779301 .. 48781683 (+)
Sequence length255
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCAAGCTAGCTTGCAAAATTGGGTCTAGCTTATCTAGCCAACATGGATTTTTTCGGTATGAACTTGAGTTTTTAGGGCTACCTAAACCCGCACATTTTCCGACCAGATTAAATTTAGGACTATACTAAGCCTAAGTGATAGGAGTCAAATCAGACCGTTCTAATACTTTTACCTAAAAAACGAGCCGCTCAGATCATTCATGATTAACATTAATGATTAACATTATTTATACCTCATTACATTGACCATGAATTATTATTATTTCAAAAAAGAACACCTAAATCCCTTATTAAAAACGAGAAGTAATAAGATAAAAATATGACCTATATCATAAAATCATCATCCCTCAATCTTATTCTCATCTATCTCTCCCACCAAAACCGTAAAATGTCCACTGTAATGTGACTCGAGAATCTTACTCCTCCTTCATAGTCCTTGCTCATCCTGACGTGTCGATCGACCATGTCAAAACTTTATCTTCTTCCAGTTTTTTTCCATGTCTGCCCCACTCTCTTTTCTTTAATTTTTATTTTTCATTTTCCTAAAATTAAAATAATTCCCCACTCCTTTTTTCGAGGTTCTATAAATTCATACTCCATATCTCTTCTTTACATTCCCATTTCCTTCACAATCTATCCTATCCTCAAAAAAAAATCAATCACTGGAAATTTATCTCACTTTCTCTACCCTACCATTATTTTCAGGTATATTTTCTTCTCCCCTTTAGTTTAATTTTTGAATTTTTATAGTTTTTATTCATTTTTTCTAATTATATTCTGTATTTATTTTGATGGGGTTTTGCCATTTTGGGGTGTCTTAATTTTCTGTTGAAACTATTGTTTGAATAACCATTGCCATTGATTGCAAGTTTGTATCTTTTTTTATTTGCTACTTGTAGAGTTTGCTTATTTGGTGGAGTCATATACTCATGTACACACTTGATTCATATTACTATACTTTCTTGTTCTAATTTATCCAATGTGCAAATTGCCACTGTTTCTTGATTGACCTGCTGATTTTCTTCATCCCTTAATTATGAATCCAATCATACTTTTCATGGTTTGTTTGATGGGATCATGATATAATGCCTCATTCGGGCAATTAGTTTGATAATTTTGAGGTCTAAGTATACATTGATGATTTTCTTCATTCCTTAAGTATGAATCCAATAATACTTTTCATGATTTCTTTGATGGGATCATGATATAATGCCTCATTTGGGCAATTAGTTTGATGATTTTGATGTCTAAATATACACCCAGATCTAATTTCCTTGAATAATTTAGATTGCCCTTTCTAAAAGCCAGGACATTTTCAGATTTTCTATGTTAAACAAAGAGAAAAAGAAAGGGAAGGATCTCAATTTAATTATTATATATTTATATTACAATTCCAAAAGAAGAAATCTTCAATGTACTGATTAATTGGTTATTAGAATTGTGATTTGTATGGTTCTTTCAAATGTCTGTTAGTGGGGTAGGTGGTTGCTAGGAAGGTTAGTAACTTTAGAATATCACTTGAGATCTTTGCTTATAATATGCTTTACTGCCCCATGTGCTAGTTTATTCACTTTCTTGCTTTGAATCTACCTACCACAAGGACCACAACACCACTACCTTTTCATCCAATGATGTAGACGAGATTCAATCCATGAGTTTTGCGTTGGTGCCTCTAAACTTTATTAACTAAGCTAATTGACATACACATTATGCACGTTACTATATGTTAGTAATTGTTTTCATTTGGAAATTGTGAAATTTCAACTGTCCAACACTATAGCCTTATATAGTTCAATGGGAAGAAGAGAAGAACCATGACTCTTATAAAGAGGCCTTAATTTGAAATCTTTGAAGAATGATTCTAGGATCTCCTAACATTTACAAAGGGAGAAATGTCATTAGTGTTCTTACTTGATTCTAATTACCTCTTGCTCATGAAGATTTACTATGACATTTTACCTTCTGTTAGGGTGCGTTCTATTCAACTTATTTGACCTGATCTTATCTGAACTCGAATAGAGTTTTTTCGTGAAATATCCATGTCTTGCTCATTGCTGGTTAAATCTTAATTGGTTAACTTGTCAATTTTGACCCTGTATGATTCTTTACAGTTGATCTTCCCACATAATGGAAGTCGCCGCAGGATAATTCTGGCTATGTTCTATGGCCTTGACTGGTATTACTTGCTCTGATTCATTGCTTATGACTCATTAACTCATTTGACCCCCTGCCTTCTAGTCTTTTATTTAGCTTCTGCAGTCTGCACTATTTGTATCAAGGATTTATAGTACAGTAAAAATGATCACTTTTATTTGCAGCATGCTATTCTTTTTCCCGAACTGTTATTGATCTGATTGTAATTGTAACATATGATAGGTAA

mRNA sequence

ATGTCCAAGCTAGCTTGCAAAATTGGGTCTAGCTTATCTAGCCAACATGGATTTTTTCGGTTCTATAAATTCATACTCCATATCTCTTCTTTACATTCCCATTTCCTTCACAATCTATCCTATCCTCAAAAAAAAATCAATCACTGGAAATTTATCTCACTTTCTCTACCCTACCATTATTTTCAGTTGATCTTCCCACATAATGGAAGTCGCCGCAGGATAATTCTGGCTATGTTCTATGGCCTTGACTGGTAA

Coding sequence (CDS)

ATGTCCAAGCTAGCTTGCAAAATTGGGTCTAGCTTATCTAGCCAACATGGATTTTTTCGGTTCTATAAATTCATACTCCATATCTCTTCTTTACATTCCCATTTCCTTCACAATCTATCCTATCCTCAAAAAAAAATCAATCACTGGAAATTTATCTCACTTTCTCTACCCTACCATTATTTTCAGTTGATCTTCCCACATAATGGAAGTCGCCGCAGGATAATTCTGGCTATGTTCTATGGCCTTGACTGGTAA

Protein sequence

MSKLACKIGSSLSSQHGFFRFYKFILHISSLHSHFLHNLSYPQKKINHWKFISLSLPYHYFQLIFPHNGSRRRIILAMFYGLDW
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo05994Spo05994gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo05994.1Spo05994.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo05994.1.exon.1Spo05994.1.exon.1exon
Spo05994.1.exon.2Spo05994.1.exon.2exon
Spo05994.1.exon.3Spo05994.1.exon.3exon
Spo05994.1.exon.4Spo05994.1.exon.4exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo05994.1.CDS.1Spo05994.1.CDS.1CDS
Spo05994.1.CDS.2Spo05994.1.CDS.2CDS
Spo05994.1.CDS.3Spo05994.1.CDS.3CDS
Spo05994.1.CDS.4Spo05994.1.CDS.4CDS


Homology
The following BLAST results are available for this feature:
BLAST of Spo05994.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Spo05994.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Spo05994.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Spo05994.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
back to top