Spo06252.1 (mRNA)

Overview
NameSpo06252.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
LocationSpoScf_03155 : 13017 .. 17793 (-)
Sequence length2653
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCCAAAAACTAGTTTAGTTCCTAAAAGCTGAGAGTCTTTCATAATGCATGAGCTTATATGATAGCAATGTTGAATGGAGATGAATGGTTTGTCAAGCCTAACCTTATTCATTGAAGAATTAACACCCAAGTCAATAAAAGATGTTGCAATTAATCAGTGTGTGAGTGAAAAAGAAGGTATTCGGGGTTAACACTTAACACAGGTCGAGGTAAATCGGATACCGATTTTTATCGATTCAAGTCGATTAGGGTTCTTATCGGGTATAATCGGTTTTGGGATTGCTATCAGATCGGATGGGGTTTTGGTTCGGTTAAATGTTATCAGAAGCAAATCGGGTTGAGGATCTCCTCGGGTTGCCAGCGGTTCGGGTTCAAATCTTGAACTAACGGGTTAAATCGGATCGGTTTGGTTTTAAGATCCCTATTTCTAGGATATATTCAGTTCAAAAGTTAGTTGATTTCTGTTTCTCAAGTCTGTTCACTTTTTGATAGCCTTACTGAAACATCCTTAATTTGAGCCCCTTTATGCTTTGTCGGACAAATATGTTGGAGACTTCTCAGAAGAAGAAATTGAAACTTTTATTCTTATTTACCTTGGCAAGTGATTTTGAAAAGAAGACTTGTGACACCATTATTTTTCACCATCCCGTATGTAATTCCAGCAAGTTAGAAATCTTTCTCAAACACAATAGTGCTTTTACAAAGTTGTATAGTAATTTACATGCCACTTCTTAAAAAATTTCAGCTCTTAAACGGAACTCTCAAAAGATGTACTCTAGTGTGATAAAAAAAAATTGGGAAATACAGTTCATTACAATGTGCTTCACTTCTAACCCATTGATCAAGACCTATCCAATATACTCCATGAGCTGTTGTGTGCTGATATCTACACCAGAAAGCCAACAACCAAATCCAGGATGCGTGCGAGTTGTACCATCCCACAGGCCACAGCCATCCCAGCCGCTACATGACAGATTGACAGCAACCATAAAAGTAGCAACACAGAAAGAATGATTGAATACAGTAGCAAACAACCCAGATTGAAAAAAACTACTTATTCCAAACATGTATAACGAATGTTGTCCTGGCATGAACTACAAGTAACCCCCTCCCCCCTTCCAATAACAGGTCGTACATTTGTTAATCCCATAGGTAGGATCCAAGGAGAGCGTGTGCATGATTAGTGTTGGAAGTTCTTGTTGGGAAACACAAAAGAAAGGAGTGTAAAATAAGAGGAATATTTTTGTCCCACATTGAAAGAACTCTTCATATTCTCCTTGTTTCTTGTTTGAGAAAGTGTGAGAGTAGTATGGGTGGACACATAACACGTGCGTCGGCTGGACCGGGCTCGGGCCACGACCCTTGGTACTTGGGAATGCAGTTCGCATGCGTGGAGGTGGGTTTTGTGGGCTTTACCTATTCTTTTTGGTACTGGGCATAAGTCCTTGTTACGGGAATATGTATTGATTAAGTAACCGTTGGATTATATAGAGAAAGGCTCCGTAAGAAAACTTCTTACGGTAAGAACACTCTCTACACCGTTCGATCAAATCTAATCTAACCGCCCAAATTTGATATGAGAGTAATGGCATTTTCGTAATTTCAGCTGCACACTACCCCTTCTTCCTCATCAGCATTCTCTCTCTCTAAACTCTTCCTGCTCCCCCTAAACACTCCTCACAACTTTCTCTCTCTTATCTCTTCAATTGCGGGTGAATTTTACCCCACATTCTCGCAAGTTTGAGCAAATTCGTCAAATTCTTCATCAAATTTATGATCTATTACACAATATCACCCTTCATCTTCATCAACTTTCCTCAAATTTCTTCAATTTCATCGGATTGTAATTCAAATTTGACGAACAATTTCGTCAAAATTAGCGATTTTCGTACGTTTAGGTTAATTCAGAGGTATGATTGTTCAATTTCCTAATTTTCGATTTATTTCCTCTCTTATTACCGACGCAACATCGTAGCAACAATCTTCATCAAATTGTGTGCAGGTGTTGGTGGAGGCGCAGTTGCCCGTGTCAGCTGCTACTGGTGGTGGTGCAGGTGTTGCTGCCGCCGGGGCTCCAAAGTAGGAGAATAAGGTTGAAGAGAAAGAAGAATCGGACGACGTAAGAACAACTCTATCATCCTCTATCTTGTGTTTGTGTTCTAAACTAGTGATGCATATGTTCTAAATTAGTGTTTTTATGTTCTAAATTATTGTGTGTTCAAAATTGTTTGGTCGAAGCTGGAAATTTGAAACTCATCTTTTCTTAGTAGTACAATTTAGGAATAATAACACTCAACTGGTGTCATTGAATTGTGATGGTGACAAACCTTATGAATACGTCATATTCTGAATAATTTTCCTTATTAGGAGTTTTCTTGCTTAACAAATTTCTTGTTATATTGTAATCTGGTGAATTTTCCATGAATTAATGTCGGTGTTATGTTCTGAATCATCATTGCTTATGTTCTAAACCAGTCATGTATATGTTCTAAATTAGTGTTTTTGAAATAGTTCCTGATTCAATATAAGTTTCTGAAAATTAGGAAGAAATTTGTGTTGAAAGAGACCTCGTGATCCAATTAAATTCATGTCAAGTGTATCATGTCCTATCTAAATCACCCTTGCTTATGCTCTAAATCATCCTTGGTTATGTTCTAAATTGGGAATGTCGCGAAAACCATTTGTTAGATATGTTAAGGTCCAGCCTGAAACCAATATTTGGCTATTCTCGGTGGACGATTTGGCTACATTTAATTATTCTCTGATACTGAAATGTGTGGGAAACCTTCAGGTCTGTATTTTCTTGCATCTTTGTGGTTTCCTGCGGTCTTAAATTTTATTTTTCGTGTTGGATTGTAACATGCATGTATTCTTTGTGTATTGATTTCCTTGGAATCAACACTTATTTCTCTTTCTTGTCGTCATTGGTACTCTTGTAGTTGCTAAGAACATGATCTGTATAGATTGGTGTTGGTTGATACTGTATTACATCTGAAGTCCTCTGTTGTTGTGAGTGTGTCTCCTATTGGATGGTCTCGTCTATCTATAGGTTGTGTGAAAATGAATTTGGATGCGCATGTAGGGGTTGGTGGTAGCGTGGGTCTGGCTGTGGTGTGCAGGGATGATGAGGGGCGTGTGTTTGTTGCAGAGGATAGGATTAGGAGTCTGCTACTGTTGTTTTGGTGTTCATCTAGCAAGTTACTTGGGATTCATGGATATTATTGCGGAGTGCGATGTTACAAACGTAGTGCATGCTATCAACTTCTCCCCATTAATGTTATTTTATAAGGATATAGCTAGGATGAGACTTGAGTTTACTTCCTTTTCTTGTTGTCATGTACGAAGGGGGGGAGTATGTATGATTTCAAGTTAACCTCGAAGCCGAGGTTCAAGTTTGGAAATTAATGGATAGACTCATAATCAGCTGGTCCATGCCATAGGCTGGTTCTGGTCATAGTTGATCTTAAAGTTTTGGAGTCTAGATCTAATCTTGCTTATGTTCTAAGGTGTTATTGTCTATGTTCTAATTAGTGTTGCATATGTTCTAAAGGTTTATACGAATATTAAGTGGTTATGTTCTGAACTTTATGTCAAGTGTATTAAGTGGTGCACTAATTCAACTACTACCAGATTGGTTTGGTTGCAAGAAATGAGAGGAGGAAGTATGACTTCCTAGGAATTGGACATGAGTGATAAGGTCGTATGTTCTAATTATTGTTTCATATGTTCTAATTATTGTTTCATATGTTCTGAAATACAATTTCATATGTTCTAAATTGCAATTGCATATATTCTGACCACATTGTAGTTTCTTCAACTCTTTTATGGGCTATGCAGGAAGTTACTCGTGTTTAATGATCGGGATGCTCAATGCATATTATCTGTTCCTCTCAGCATCAGGTCGACGATTATCGACGTGACATACATGTTTTCGGTTTTGTTATTCTAAGACAATACATACGAGTCCGTAACTAGCAGACACCAGTATTGCTTCTCAACATCAGGTATTCAGGCCCTAGCTATGAAGTTCATTCCATAGAATTCTGAACTCCTGAATCAATTTTCAGTGCACTTATTTCTGCTATGATAGTCGAATCCCTGATGACTACTAATTATTGTGCTGCTTACTTCTGATCCTGATTTTTATTTCAGGTCATCCCTGGATAATGGCAGACGACTTGGCTCCTGATAAGCTTCTTGATCACTCAGTCATATCACGGTTGACACAGTTCTGTTTATCTACGGGTAAGTATTTCCCAACTTGCCAAGAACAGGGAGGAAGAAGGGAAAAACGGAACCATTACTGTTTATCTAGATTGATTTCTTAATTGTATTTTTAAATACAGGTTATTTCTGATAGGCTTTCAGATGAAGAAATTGCAGAGGTCGAGGAGATTTTTAAGATAATAGACAGATAACAGTAGGTAGATTGCTCAAATGTTAGAGCAATGTGCCATTGCACATGGATGTCCTACGTTCCAATATTCTTTCTATTTTGTTTATAGCCATGAATTTTGGTCCATCATGTGAAGAAATATGTTGGACACAGATTTTATTATGTCAGTCGGAGCAACTCTATTATGGTATATTTGTGTGAGCTCGTAACCATTCATCCGTACATTATAATTTGGAGCTGATTATGGTTTTATTAGGTGTTCTTAAACCTATTAGCTCAAGTGGTAGAGCACTATGCAAATGCATAGAGTATGTAGGTTTGATTCCTACATAGGTTGTCTTTAAAAGATAATAAATAAATAAAACTCAAAAGTAAATTAAAA

mRNA sequence

CCCAAAAACTAGTTTAGTTCCTAAAAGCTGAGAGTCTTTCATAATGCATGAGCTTATATGATAGCAATGTTGAATGGAGATGAATGGTTTGTCAAGCCTAACCTTATTCATTGAAGAATTAACACCCAAGTCAATAAAAGATGTTGCAATTAATCAGTGTGTGAGTGAAAAAGAAGGTATTCGGGGTTAACACTTAACACAGGTCGAGGTAAATCGGATACCGATTTTTATCGATTCAAGTCGATTAGGGTTCTTATCGGGTATAATCGGTTTTGGGATTGCTATCAGATCGGATGGGGTTTTGGTTCGGTTAAATGTTATCAGAAGCAAATCGGGTTGAGGATCTCCTCGGGTTGCCAGCGGTTCGGGTTCAAATCTTGAACTAACGGGTTAAATCGGATCGGTTTGGTTTTAAGATCCCTATTTCTAGGATATATTCAGTTCAAAAGTTAGTTGATTTCTGTTTCTCAAGTCTGTTCACTTTTTGATAGCCTTACTGAAACATCCTTAATTTGAGCCCCTTTATGCTTTGTCGGACAAATATGTTGGAGACTTCTCAGAAGAAGAAATTGAAACTTTTATTCTTATTTACCTTGGCAAGTGATTTTGAAAAGAAGACTTGTGACACCATTATTTTTCACCATCCCGTATGTAATTCCAGCAAGTTAGAAATCTTTCTCAAACACAATAGTGCTTTTACAAAGTTGTATAGTAATTTACATGCCACTTCTTAAAAAATTTCAGCTCTTAAACGGAACTCTCAAAAGATGTACTCTAGTGTGATAAAAAAAAATTGGGAAATACAGTTCATTACAATGTGCTTCACTTCTAACCCATTGATCAAGACCTATCCAATATACTCCATGAGCTGTTGTGTGCTGATATCTACACCAGAAAGCCAACAACCAAATCCAGGATGCGTGCGAGTTGTACCATCCCACAGGCCACAGCCATCCCAGCCGCTACATGACAGATTGACAGCAACCATAAAAGTAGCAACACAGAAAGAATGATTGAATACAGTAGCAAACAACCCAGATTGAAAAAAACTACTTATTCCAAACATGTATAACGAATGTTGTCCTGGCATGAACTACAAGTAACCCCCTCCCCCCTTCCAATAACAGGTCGTACATTTGTTAATCCCATAGGTAGGATCCAAGGAGAGCGTGTGCATGATTAGTGTTGGAAGTTCTTGTTGGGAAACACAAAAGAAAGGAGTGTAAAATAAGAGGAATATTTTTGTCCCACATTGAAAGAACTCTTCATATTCTCCTTGTTTCTTGTTTGAGAAAGTGTGAGAGTAGTATGGGTGGACACATAACACGTGCGTCGGCTGGACCGGGCTCGGGCCACGACCCTTGGTACTTGGGAATGCAGTTCGCATGCGTGGAGGTGGGTTTTGTGGGCTTTACCTATTCTTTTTGGTACTGGGCATAAGTCCTTGTTACGGGAATATGTATTGATTAAGTAACCGTTGGATTATATAGAGAAAGGCTCCGTAAGAAAACTTCTTACGGTAAGAACACTCTCTACACCGTTCGATCAAATCTAATCTAACCGCCCAAATTTGATATGAGAGTAATGGCATTTTCGTAATTTCAGCTGCACACTACCCCTTCTTCCTCATCAGCATTCTCTCTCTCTAAACTCTTCCTGCTCCCCCTAAACACTCCTCACAACTTTCTCTCTCTTATCTCTTCAATTGCGGGTGAATTTTACCCCACATTCTCGCAAGTTTGAGCAAATTCGTCAAATTCTTCATCAAATTTATGATCTATTACACAATATCACCCTTCATCTTCATCAACTTTCCTCAAATTTCTTCAATTTCATCGGATTGTAATTCAAATTTGACGAACAATTTCGTCAAAATTAGCGATTTTCGTACGTTTAGGTTAATTCAGAGGTGTTGGTGGAGGCGCAGTTGCCCGTGTCAGCTGCTACTGGTGGTGGTGCAGGTGTTGCTGCCGCCGGGGCTCCAAAGTAGGAGAATAAGGTTGAAGAGAAAGAAGAATCGGACGACGAAGTTACTCGTGTTTAATGATCGGGATGCTCAATGCATATTATCTGTTCCTCTCAGCATCAGGTCGACGATTATCGACGTGACATACATACACCAGTATTGCTTCTCAACATCAGGTCATCCCTGGATAATGGCAGACGACTTGGCTCCTGATAAGCTTCTTGATCACTCAGTCATATCACGGTTGACACAGTTCTGTTTATCTACGGGCTTTCAGATGAAGAAATTGCAGAGGTCGAGGAGATTTTTAAGATAATAGACAGATAACAGTAGGTAGATTGCTCAAATGTTAGAGCAATGTGCCATTGCACATGGATGTCCTACGTTCCAATATTCTTTCTATTTTGTTTATAGCCATGAATTTTGGTCCATCATGTGAAGAAATATGTTGGACACAGATTTTATTATGTCAGTCGGAGCAACTCTATTATGGTATATTTGTGTGAGCTCGTAACCATTCATCCGTACATTATAATTTGGAGCTGATTATGGTTTTATTAGGTGTTCTTAAACCTATTAGCTCAAGTGGTAGAGCACTATGCAAATGCATAGAGTATGTAGGTTTGATTCCTACATAGGTTGTCTTTAAAAGATAATAAATAAATAAAACTCAAAAGTAAATTAAAA

Coding sequence (CDS)

ATGATCTATTACACAATATCACCCTTCATCTTCATCAACTTTCCTCAAATTTCTTCAATTTCATCGGATTGTAATTCAAATTTGACGAACAATTTCGTCAAAATTAGCGATTTTCGTACGTTTAGGTTAATTCAGAGGTGTTGGTGGAGGCGCAGTTGCCCGTGTCAGCTGCTACTGGTGGTGGTGCAGGTGTTGCTGCCGCCGGGGCTCCAAAGTAGGAGAATAAGGTTGAAGAGAAAGAAGAATCGGACGACGAAGTTACTCGTGTTTAATGATCGGGATGCTCAATGCATATTATCTGTTCCTCTCAGCATCAGGTCGACGATTATCGACGTGACATACATACACCAGTATTGCTTCTCAACATCAGGTCATCCCTGGATAATGGCAGACGACTTGGCTCCTGATAAGCTTCTTGATCACTCAGTCATATCACGGTTGACACAGTTCTGTTTATCTACGGGCTTTCAGATGAAGAAATTGCAGAGGTCGAGGAGATTTTTAAGATAA

Protein sequence

MIYYTISPFIFINFPQISSISSDCNSNLTNNFVKISDFRTFRLIQRCWWRRSCPCQLLLVVVQVLLPPGLQSRRIRLKRKKNRTTKLLVFNDRDAQCILSVPLSIRSTIIDVTYIHQYCFSTSGHPWIMADDLAPDKLLDHSVISRLTQFCLSTGFQMKKLQRSRRFLR
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo06252Spo06252gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo06252.1Spo06252.1-proteinpolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo06252.1.utr5p.1Spo06252.1.utr5p.1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo06252.1.CDS.6Spo06252.1.CDS.6CDS
Spo06252.1.CDS.5Spo06252.1.CDS.5CDS
Spo06252.1.CDS.4Spo06252.1.CDS.4CDS
Spo06252.1.CDS.3Spo06252.1.CDS.3CDS
Spo06252.1.CDS.2Spo06252.1.CDS.2CDS
Spo06252.1.CDS.1Spo06252.1.CDS.1CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo06252.1.utr3p.1Spo06252.1.utr3p.1three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo06252.1.exon.6Spo06252.1.exon.6exon
Spo06252.1.exon.5Spo06252.1.exon.5exon
Spo06252.1.exon.4Spo06252.1.exon.4exon
Spo06252.1.exon.3Spo06252.1.exon.3exon
Spo06252.1.exon.2Spo06252.1.exon.2exon
Spo06252.1.exon.1Spo06252.1.exon.1exon


Homology
[Close]
BLAST of Spo06252.1 vs. NCBI nr
Match: gi|902036320|gb|KNA02640.1| (hypothetical protein SOVF_216730 [Spinacia oleracea])

HSP 1 Score: 84.0 bits (206), Expect = 2.800e-13
Identity = 41/41 (100.00%), Postives = 41/41 (100.00%), Query Frame = 1 

		  

Query: 129 MADDLAPDKLLDHSVISRLTQFCLSTGFQMKKLQRSRRFLR 170
           MADDLAPDKLLDHSVISRLTQFCLSTGFQMKKLQRSRRFLR
Sbjct: 1   MADDLAPDKLLDHSVISRLTQFCLSTGFQMKKLQRSRRFLR 41
[Close]
BLAST of Spo06252.1 vs. UniProtKB/TrEMBL
Match: A0A0K9Q6K4_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_216730 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 2.000e-13
Identity = 41/41 (100.00%), Postives = 41/41 (100.00%), Query Frame = 1 

		  

Query: 129 MADDLAPDKLLDHSVISRLTQFCLSTGFQMKKLQRSRRFLR 170
           MADDLAPDKLLDHSVISRLTQFCLSTGFQMKKLQRSRRFLR
Sbjct: 1   MADDLAPDKLLDHSVISRLTQFCLSTGFQMKKLQRSRRFLR 41
The following BLAST results are available for this feature:
BLAST of Spo06252.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 1
Match NameE-valueIdentityDescription
gi|902036320|gb|KNA02640.1|2.8e-13100.hypothetical protein SOVF_2167... [more]
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BLAST of Spo06252.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0K9Q6K4_SPIOL2.0e-13100.Uncharacterized protein OS=Spi... [more]
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BLAST of Spo06252.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo06252.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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