Spo06380.1 (mRNA) | SpinachBase

Overview


Name	Spo06380.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	U1 small nuclear ribonucleoprotein
Location	SpoScf_01566 : 5699 .. 14489 (-)
Sequence length	834

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCCGCCTTCCTCGATTTCTCTCTCCTCTTCTTTCTTCACTCAAACTGATTAGGGCATCGCAATTTGCTCCCTTTCCCTCTCATTTCTTCTGCTGCAACTATTTTTCTGCTAGATATTGGTAAACATATTTGACGACAATGATGCTATCTGGCGATATACCTCCTAATCAATCCATTTACGTTAAAAATCTCAATGAGAAGGTTAAGAAAGAAGGTAAACCCTAATTTTCCGCACTCTTTTTGAGTTTAGCAGCCTTCATTTTTGCAAACCCATGTTTTTATACTTTTTGTTTGCTTAGTCGTCTTCAATTTCAAACCTGTCGGTATCTAATCTATCTGGCATTTGCCTTTAATTGTACAATTTGTATAATTTAGGCTATCGATTTCCCCCATTTTTTTTTTTTACTTTTTTATAATTGAATCAGTTCATTTAGCAATTCAGAGATGAGAGATGTAATGGTGTCAGTGTGTGTTAATTTAGTTGCTAATTCAAGTATTGGAATTTGTAGCATGTGAGAAATTCTTTTGATTTTGACAGAATTGAAGAGGTCGCTTTACTGCTTATTCTCTCAGTTTGGGAGGATACTGGATGTCGTGGCTTTGAAGACGTCTAAACTTCGAGGTCAAGCTTGGATTTGCTTTAGTGAAATTACTGCGGCGAGTAATGCTGTTCGGCAAATGCAGAACTTCCCTTTCTATGATAAGCCTATTGTAAGTACATCCATTTACAGCTGTGTACTCCGTCGTTGCTACACATTGGGTTTTCTTGCTCTGAATTTGAGACTGTCACTATCTAGAATGATATTGTGGTTAACAATCTAGAACTGCCTGTCTAGATAAGCTATCACTATACCTTGTAAAGAATTGCAGAAATCTCTTCTCTTCCTTGTATCTTGCCTTAATGCAACATGCTCTTGCTGATAGCCTGATACACGACATTCTATTCGCCCTTCTTGTGTTGCCCACTATTTCTTTCTGGATCATCCAAGCTATTTAACCGCATTTTGTTTTTCTTATTCAGTAGGCCAACACTAAAAATATACATGTCCTCATAAGCTACTGGCTAAGAAATAATTTTAGTTGTGCGACCAATGCTAGTTCAATCAAATTCTATGATTCACATACTTGTTAAACAATGTTGTAGTGATGAACACGTTCTAGTTTGCATGGTTCATATAAGGCTCCGGTTGGTTTGGTGTAAAACGTATTCATGTAAAATTAGTTTAGAATTATGTTTTCCCTTGAAAACAGTGAAAACGTTTGGTTTGACGTTTTACACCAATCGAAATGGAGCCTAAGTGGAAAAAATATAGCAAGTGCGTGCTACACTCTGAGCTGGAGTTCTCATATCACTAGATGTGTCAGCTTGTGAAACTTGAAGGCGAGGGATGAGGAGAGAAAAGAGTATACTAATGACTCAAATGAGAATAAGAAAGATACATGGTAGCAACAAGATTGGACACAGCAATCTACTAAAATTGGTATGAGATCCTAGACGGTGGGGGGCATTTGGTTATCTGATTTGTACTGATGGGCACAGTAATACAACCAAGTACAAGCTGTACAACTTCCAAGATTATGAGTCTTCCACTAGTACATAACTTTTGTTTGATTAGGAGATTGCCAATACATATAGTTCAACTGGTCTAGCCTTTGTTTACAAATTTAACATATGGACCTCAGTAGTTAGTTGTTTGCAGCTGTGAACTACTGACTTCGGGGTGTACTAAAAACTACATGGGCAAACTGCAAGTGGTTTTAGCTGAACATATACTCTTGAGTGATGTCTTTTTGTAGTGCACTTCATGTATTGACTTATGTGGTGTTAATTTACTTGTTCCTCCACCCTGTATTCCCGTTGCTATTGTACTCTATATATTTTTGTGACTGGTTGAGAATATAGGTGACAATAAACATTCATTTTGAAATCCACATGTTAAGGCTCAAAATATATTGCCATTATTGAACATTTGACAACTTAAAGTGGACAATGAATCAGATTATTTGGCTTAGGCTTCAAAGAGAATTAATCATCTTGAAATATAACATTTTGTATATTATCTCAAAGTCCATGCTTACTACAGATTTACAATTCTATAGACTATTTATTTTCTGGTGCTGGAAACTTTGAATAACCATCCTCCACACTCCACAGTATGTAGTGTTGGGCGGTTGGGCCTGTTGGCCTGACCTCCCAATCAGTAACGGGTCTTAGTTCAGATAAACTGCAAGCTCTCACATGAAAACAGTACACATGCTAGCCTGTCTAACATTGTCTTGTTCTGCTTTTTTTCATTTTGTCAGCGGATACAATACGCAAAAGCCAAGTCAGATTGTATAGCGAAAGCAGAGGGGACTTTTGTTCCTAAGGAAAAGAAGAAGAAACAACAGGAGAAGGGTAATGACCCAATTCTGTTCTTTGACTTATTGTATTGTCAACATTTTCATGTGGTTAGCAATTTATTGATCAGTATACTTGTTAGAAAACCATGGTTACACAATTATTTGTCACATTTTGTACCTAATCATTATTGTCTGATAGGGAAAATCTTAGAAAATTGAGTGGCTTGAAAGTCTAAAGGAGCTGTGGGAGATTAATGTTTCATGTGTCTTTCACCACCTCTCAAACTCCAAAATATTAAGAGAATTGAAGGAAAGGTATCAATTGAGAGCTACCAATACCTTGCATGCAGTAGTTGTCCCGAAGAACATATCTTAAGCCCCAATCTTTTGCATCTGAATTTGGTGGATACATGCTTGTTCAATTGACATCTAGGGTTTGATTTAGGCTTACCTGATTCGTGGTTCGCTTCGGAATGGGTTCGCGATTCGCGGGTTGGTTGATCTTAGGTTCGCTAGAGGGGTTTGGAACTTTTTGTTTCCGTGGTTTTTTTTTAAAAAATATTCAAAATATCATACTCTGTTCCAACTTTATTGCATCACGGGGGTTTTGTTGATGGAAAAAGTAGAAGAGAGAAATATAAATATACAAACTTGCCCATGAGTATATAAATCGACAAGAGTAAACATGCAAGGCATATTGGTATTAGTAGGGTAAAAGCAAAAAAAATTATTTCCTAAAATGGATATGGTTTTATGAAACTTCCTTAAAAAGGCAAAAGGTGCAATAATATTGGAACGGAGGAAGTGTATTTTTTATTTTATTATTCATACTAAAAAAAACAGTTAATAAAATAAAGGAAAGAAGAAACAACCCAGATGCATAAGCATTAACCTTTCACATCCGTTATAAAACCATAAAAAAATAAAAAAGTCAAAGCCCACCAATTCACCACTAAGAGTAAACAATGCACATGAATAAAAATCGACGAAATGGAAATCCACTTGCAGCCATTTGGACTTTGAAAAGACAAAAGAACGACAATAACAATTGACAATCGCAATCAGCATGTATTTCCTTATAAAACAGAAGCCCCGACATTTTTTTTCCTTCTCTTGCCTTCCCTGACCTTCAATCTGTAAAACTAGGGTTTCGGATTCGGCACGACAATACCAGCACTTTGGTTCGCGAACCACAGGGAATTGGTTTGCTGAAGAACTGCGATCCGGTACGGGCGAACCAATTCGAGATCCGGTAACACTGGTTTGATTACTCAAGTCATTGGTCTGAAACTTTTGTTCATCGGGGATTCCCTCTAAAATATTGAAATAGACCAATTGATTTGTCCTTCACCAACCACTAGAACCTGAACATACAGTTAAAAATTTCAACTTATAGGTTATATACTGAAGTAATTTAGTGTGTTCTCAAATAGTAAATTATGGGAAACGTAGGTCAATTCTATTTTTTGGCCGGGGGGTTGGTGGGGGGAAGGAGATTGGATAATGTGGTGACCATGGTTTGAACCATGCAGGCTACTGATTTGACGTCCTGGAAGTTTCACAGGTGTGATTTAGATGAGTCCAGGGAAGAAACTTCTTTTCACTAGTACTGAAATACTGATTGGGCACAAGAGACACTTGCTCGGCATTGTGTGCCCAAAAAAAATATCACAGTGCTAAAAAGTTAAACAGTATATAATTTGAAAGTGACGTTGGACAAGTTTGTTTGAAATTGGGTAGGAGTATATATTAAGAACACTGGGTAGTATTATCTTGGAGAGGAATAGTTGGTCTGATGGTATTTTAGAGTCCTGCAGCTGTTATCTTCTTCGTGGACCCTCATGTAAGCGACATTGTGTTGAAGGGGTGAAGCCATGAAGGTATATAAAATTGGTCAAATATAATTCTTTTGGAAGGGGAATTTTGGCAAACATGAAGTACTATTATAGTTTTGATGGATTAGATGCTCACAAACTGCTAGCTACTAACAAGTTATTAGATAGTATCTTTGCTAGCTAGAATTGCTAGCTAGAATTGAAGTTGAAACTTACAAGCATATGGAAAGCAGAGCAGCTTTTCACCATCAGGCTATTAGAACTTGACCAGCTCTTTGTGCCTTTTTACTTTAGTTTTATTTGTCCTGGGCATTAGCGGATTAACCCCCACCCCTTCTTCATTGAATCTTGGCTAATAGTATTAGTCTATTGTGTCTTAGCTTGCAATTCTTTGATCTAGTAATGTTAAAGATCTTGGTCCTTGCCATTTCCTAGAAATGGAGGGAGTAGTACACAAGGAAAAATCAAAAAGGGGACATGAGAAAAGGAGGCAGTTAGGCATGTTAATCATTTGTCTAAGTATTCGATCTAGCGGTTAGCCAACTTGGCAACCTGAATGTTCTAGGAGAGAGAAGAATATGGGGTAGCAATGTAGCATGAAAAAGGCCGTAATAAAGATAGTTTGACAATTTGGCTTAATGTTAATAAAAGTACAACTAAACTTTTTTATTGAAAAAGAGTAAATCAAAATTTAGCAGAGATCATAATGTGAAGATTTGAAGAGAGATAAAACGGGACTTCAGGAAATTTTGGCCACTTAGCTAACTATTAGGTATCTAACAATTAGCCAAGTAATAAGATGAAAGAGTTACTATTTGGCTAACTGTTAGGTATCTAATAGTTAGCAAAATGACCAAAATATAGAGCAGATGGTAGAAAAGGACAGCTTGTGGAAGGAATCAACATGAACCTTTTGATTGTTTGGCTATCTACAGAATAATAGTTAGCTAAATTGACATTTTTGAGAAAGATTACATGGATACTTCTATTATCAGATATATATCCTAGAGATCAATGCCTAGGACTAATTGTGGGACCAAAGATTCAGCTTGCATGCCTCGATTTTGCCAAAAATTTGCCAAGGTCGGTCATTTTCAAATAAGAGAAAGATTGACTTCCAATCTTGCAGATGCTCCCTTCAGAACCATGCCAGCTCTCCAATTGCCATTAAGATAGTCCGCCTTTTCGATCATATGATTGTAAGATCACTATTAATCTTTGATCTACAAAGTGGAAGGCAATCTGGATTGGCTCAGGATAGTTTTCGTGGTAGGATCGTAGTAGGATATTTTGAATCATACATGATCTAACAGGCTCATGTTTTTTGTTTATTAGATCATTTATGATTGTAAATATTCGTGTATAGAGCATAATAAGCATGTGTATTAATGAACTAGTGGTGGTTCATAGGAAGTTAGACCTTTGATCATACATGTGTACTGTGTAGTAATGGTTTATTATTGCCCAATAGTGAGAGCTGATTTTTGAGGTCATAACTTAAAACTCTTTTTGCTTCATCCATAATGTGGGATAATCTGGACAGAAGGTGAAGTGAAGCTAGAAATTAGTATGTATGTACAAGTGCCCCTTTAAAGGCTGTGTGTAAGTGTGCAACTCATTTTTTGGTTGCTAGCCTGATTGAAATAGAGAAGGGAAGTCTTTTTTGTCCCAATTATTCTCTTATGTTTGCCAGATTCTGTAGTGTTGGTACTATATGTGACAATTATTTCATTATTGTAAGCTACATTTCAATTTTGTGAAAGCATTTTAATGGAAACTCCCCGTATGATTTTCTTTTTGGATAGAATTTAAAGGGAAACCTCCCTTCATGTCGACACAATGATCGTCGTATATTTGTGCAAAATAAATGAGAAGGCAAAGACAAATCTTTGGAGGTCCCAATTATCCTCTATGTGCATTCATTAGTCACTGGAGCATGTATGAGATCCTCTTGGGGTTTGAGCATCTTCAATGACAAATTAGAGTGTATGGTCTAAGACTACGTAAGACAAAGGTTGCAAACTTGCAATCATGGCCATGACGAGTACCCATTAATCCGTATTTAATCACCAAACGAATCTTGCTTATTTCAGAGTTTATGGCTCATGCATGTGCGTAGATCATCTTCTATTCCCTCCCCCTTTTTGTAGTAATGGGCTACTACTCAAAATTTGAACTTATCCATGGTTATAGACCTTGCAGTAGTAGGGTTAGTGGTAATATGTTGTCCATGTATGCGTATCTCAAATTTAGTTAATGCGCTACTACTCAAAATTTTGCTTTCTTGAGGCTCCGTTTTATTCGACTTATTTTTATTGAACTTATATTATCTGAACTTAACTGAACTTATCTCATTATCTGAACTTATTTTATCTGAAAAAAGCTTATTTTGTTTATTTGTGTGTAAAAGTATCTGAAAAAACTTATTTTTTCTGAACTTATATTATTTGAACTCATCTGAACTTAACGGACTTATCTGAACCTAACTGAACTTATCTAAACTTATTTTGTCTAAAATAAGTCAAAATAAGTCGAACAGAGCCTTAATATTTTTCTTGTAGTCTTGCAAAGTGCAGTCCTTAGTGTTATAAGTTGGGTTTTCTCGCCCTTCTGAAAATTAAAGGATATAATTTGTGCAACAAAAAGTTTTTAGTGGCAGGGAAATCTCAAATAAGTACAGCAAAGATTCATGATATGCAAGCAACCTTTTAAAGTTACTTGTCATCTCATACTAGTGGTCCCAAAATCTCTTTTAAATCTCATTCCAAAGACTATTGTTAGAAAATTGAACAAAGCCTCGTGGATTGCTCAGTAGCTACTCCCTTCTGGATTAGTGAAATGACACTTTAGTCTAGATACTTTTGTGAGCTAGACCTTCTTTTGCCTTCATTGGCAATCAAGAAAGTATATGTTATTAGCCTCAAATTGCCCTTTTAACTTGCAATAAATCTGTGCCTCATTCCTGTATCCTCTATAGCACTTTTGGACGGTGGATGTGGATTTCAGTAAAATTTGAAGGGAATGCTTCTATTGTTGCCGAAGGGTCTTTTAATAGGCTGATGATCATTGGTTTCAAATATCACGAATCATGACCCATTGTGTGGTCTGAAGAAGTCTCTTATGTCTTAATCAGCCATTTGGATTTATACTTCTATATTAGGGTGGTTACATAATTTCCCTTGTTGAAAACTTAGTATAAAAGCCATAACTCACCTATATATCGTTCTGGATAGTGACGCACCATTTTGTTAAACCTATTTTGAACTATAGGATAGTGGATCGGATCAATATGGATAGATATGCTACTTGGTCATGTTACCTCTGTTACAAAGGAAATAATTTGAGTATAAAATAGGAGAAAATAATAATGGATGATACAGAGTATGTACAGTGATTCATAGGGATGATATGCGAGTAATGTCACAGTTATTCGTATGGATGATATGCGAGTAATGTGACAGTGATTCATACGGATGATATGTGAGTAATGTGACAGTGATTCATACGGATGATATGTGAGTAATGTGACGGTGATTCATAGGGATGATATGTGAGTAATGTGACAGTGATTCAAAACTACCTCAGATGGCATCCTGCAAAAGCTGTAAATCAAGCCCATGAACCCCTTTTAAGTGATAGAAAACCTCAAAGTTAATTTGAGGGAATCCTCGTGTTGGTTCTGAAATGGCCATGAATGCATCGATGATATTGTATCTTCCTACCGGATGATATTGACGAAATGTGTTGCAACAAAATTAGGGTAACCTCCTTGGTGGCTTGTGATAACTGATCAGACATTGCCATCATGATCATATATACTCCATAACACAGTTCCAAGGAATGTGGTAATGATGGTCATGCTCATGTATCAGAAGCTTTACCAGTTGAGACTAGAGAGATCACATTTTATAATTCGAACTATCTGATCCTTCTTTTTTTCTGGAGTTTTGAGTATCCTGAATGGCAATTAAGTGGGTATTGTGGTCTAGTGTACTTGCACTAGCAATATTTCTAATCTTTTCAGTAAAGATGGTATATCCGCTTTTGCGTCACTTTGCATGATATTCCTTCCTTCGATTTTGGATATGATATTTTTATTTGTCTTTTGCAGGTGAAAGGAAGCGACATGCAGAAGACCAAACTGCTGGCGCTGCTAATGGTCCTGCCGCTCAAACCAATGGTGGCCCATCTGTAAGTACTTAGTAGTCTTCTGTTCTCTTCACCCTAGAACAACTTGTATTAGGAGAAATGAGTTCAGTAGTTCCAATGGACCATCGGAATTGGTTCTTGTTGTATACTGTTTCGGAGCCTTGGCTTAAAGCTAATTATTACTGTCACAGGCTTCACACTGCAAGACTGGTGCACAGGAAGCAATAGCTCCAAACAATATCTTGTTTGTACAGAACTTGCCCCATGAAACAACAAGTATAATGCTGCAAATGCTCTTCCAGCAGTACCCGGGTTTCAGGGAAGTGCGGATGATTGAAGCGAAGCCAGGGATTGCTTTTGTGGAGTTCGACGACGAGGACGAATCTGCAATAGCAATGCAAGCTCTTCAAGGTTTCAAAGTTACACCACAGAACCCCATGGAAATCACCTATGCTAAGAAATGA

mRNA sequence

TTCCGCCTTCCTCGATTTCTCTCTCCTCTTCTTTCTTCACTCAAACTGATTAGGGCATCGCAATTTGCTCCCTTTCCCTCTCATTTCTTCTGCTGCAACTATTTTTCTGCTAGATATTGGTAAACATATTTGACGACAATGATGCTATCTGGCGATATACCTCCTAATCAATCCATTTACGTTAAAAATCTCAATGAGAAGGTTAAGAAAGAAGAATTGAAGAGGTCGCTTTACTGCTTATTCTCTCAGTTTGGGAGGATACTGGATGTCGTGGCTTTGAAGACGTCTAAACTTCGAGGTCAAGCTTGGATTTGCTTTAGTGAAATTACTGCGGCGAGTAATGCTGTTCGGCAAATGCAGAACTTCCCTTTCTATGATAAGCCTATTCGGATACAATACGCAAAAGCCAAGTCAGATTGTATAGCGAAAGCAGAGGGGACTTTTGTTCCTAAGGAAAAGAAGAAGAAACAACAGGAGAAGGGTGAAAGGAAGCGACATGCAGAAGACCAAACTGCTGGCGCTGCTAATGGTCCTGCCGCTCAAACCAATGGTGGCCCATCTGCTTCACACTGCAAGACTGGTGCACAGGAAGCAATAGCTCCAAACAATATCTTGTTTGTACAGAACTTGCCCCATGAAACAACAAGTATAATGCTGCAAATGCTCTTCCAGCAGTACCCGGGTTTCAGGGAAGTGCGGATGATTGAAGCGAAGCCAGGGATTGCTTTTGTGGAGTTCGACGACGAGGACGAATCTGCAATAGCAATGCAAGCTCTTCAAGGTTTCAAAGTTACACCACAGAACCCCATGGAAATCACCTATGCTAAGAAATGA

Coding sequence (CDS)

ATGATGCTATCTGGCGATATACCTCCTAATCAATCCATTTACGTTAAAAATCTCAATGAGAAGGTTAAGAAAGAAGAATTGAAGAGGTCGCTTTACTGCTTATTCTCTCAGTTTGGGAGGATACTGGATGTCGTGGCTTTGAAGACGTCTAAACTTCGAGGTCAAGCTTGGATTTGCTTTAGTGAAATTACTGCGGCGAGTAATGCTGTTCGGCAAATGCAGAACTTCCCTTTCTATGATAAGCCTATTCGGATACAATACGCAAAAGCCAAGTCAGATTGTATAGCGAAAGCAGAGGGGACTTTTGTTCCTAAGGAAAAGAAGAAGAAACAACAGGAGAAGGGTGAAAGGAAGCGACATGCAGAAGACCAAACTGCTGGCGCTGCTAATGGTCCTGCCGCTCAAACCAATGGTGGCCCATCTGCTTCACACTGCAAGACTGGTGCACAGGAAGCAATAGCTCCAAACAATATCTTGTTTGTACAGAACTTGCCCCATGAAACAACAAGTATAATGCTGCAAATGCTCTTCCAGCAGTACCCGGGTTTCAGGGAAGTGCGGATGATTGAAGCGAAGCCAGGGATTGCTTTTGTGGAGTTCGACGACGAGGACGAATCTGCAATAGCAATGCAAGCTCTTCAAGGTTTCAAAGTTACACCACAGAACCCCATGGAAATCACCTATGCTAAGAAATGA

Protein sequence

MMLSGDIPPNQSIYVKNLNEKVKKEELKRSLYCLFSQFGRILDVVALKTSKLRGQAWICFSEITAASNAVRQMQNFPFYDKPIRIQYAKAKSDCIAKAEGTFVPKEKKKKQQEKGERKRHAEDQTAGAANGPAAQTNGGPSASHCKTGAQEAIAPNNILFVQNLPHETTSIMLQMLFQQYPGFREVRMIEAKPGIAFVEFDDEDESAIAMQALQGFKVTPQNPMEITYAKK

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo06380	Spo06380	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo06380.1	Spo06380.1-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo06380.1.utr5p.1	Spo06380.1.utr5p.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo06380.1.CDS.5	Spo06380.1.CDS.5	CDS
Spo06380.1.CDS.4	Spo06380.1.CDS.4	CDS
Spo06380.1.CDS.3	Spo06380.1.CDS.3	CDS
Spo06380.1.CDS.2	Spo06380.1.CDS.2	CDS
Spo06380.1.CDS.1	Spo06380.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo06380.1.exon.5	Spo06380.1.exon.5	exon
Spo06380.1.exon.4	Spo06380.1.exon.4	exon
Spo06380.1.exon.3	Spo06380.1.exon.3	exon
Spo06380.1.exon.2	Spo06380.1.exon.2	exon
Spo06380.1.exon.1	Spo06380.1.exon.1	exon

Homology

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BLAST of Spo06380.1 vs. NCBI nr
Match: gi|902219297|gb|KNA18269.1| (hypothetical protein SOVF_072430 [Spinacia oleracea])

HSP 1 Score: 454.1 bits (1167), Expect = 1.400e-124
Identity = 231/231 (100.00%), Postives = 231/231 (100.00%), Query Frame = 1


		  
Query: 1   MMLSGDIPPNQSIYVKNLNEKVKKEELKRSLYCLFSQFGRILDVVALKTSKLRGQAWICF 60
           MMLSGDIPPNQSIYVKNLNEKVKKEELKRSLYCLFSQFGRILDVVALKTSKLRGQAWICF
Sbjct: 1   MMLSGDIPPNQSIYVKNLNEKVKKEELKRSLYCLFSQFGRILDVVALKTSKLRGQAWICF 60

Query: 61  SEITAASNAVRQMQNFPFYDKPIRIQYAKAKSDCIAKAEGTFVPKEKKKKQQEKGERKRH 120
           SEITAASNAVRQMQNFPFYDKPIRIQYAKAKSDCIAKAEGTFVPKEKKKKQQEKGERKRH
Sbjct: 61  SEITAASNAVRQMQNFPFYDKPIRIQYAKAKSDCIAKAEGTFVPKEKKKKQQEKGERKRH 120

Query: 121 AEDQTAGAANGPAAQTNGGPSASHCKTGAQEAIAPNNILFVQNLPHETTSIMLQMLFQQY 180
           AEDQTAGAANGPAAQTNGGPSASHCKTGAQEAIAPNNILFVQNLPHETTSIMLQMLFQQY
Sbjct: 121 AEDQTAGAANGPAAQTNGGPSASHCKTGAQEAIAPNNILFVQNLPHETTSIMLQMLFQQY 180

Query: 181 PGFREVRMIEAKPGIAFVEFDDEDESAIAMQALQGFKVTPQNPMEITYAKK 232
           PGFREVRMIEAKPGIAFVEFDDEDESAIAMQALQGFKVTPQNPMEITYAKK
Sbjct: 181 PGFREVRMIEAKPGIAFVEFDDEDESAIAMQALQGFKVTPQNPMEITYAKK 231

[Close]

BLAST of Spo06380.1 vs. NCBI nr
Match: gi|731349344|ref|XP_010685946.1| (PREDICTED: U2 small nuclear ribonucleoprotein B'' [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 403.3 bits (1035), Expect = 2.900e-109
Identity = 208/234 (88.89%), Postives = 220/234 (94.02%), Query Frame = 1


		  
Query: 1   MMLSGDIPPNQSIYVKNLNEKVKKEELKRSLYCLFSQFGRILDVVALKTSKLRGQAWICF 60
           MMLSGDIPPNQSIY+KNLNEKVKKEELKRSLYCLFSQFGRILDVVALKT KLRGQAWICF
Sbjct: 1   MMLSGDIPPNQSIYIKNLNEKVKKEELKRSLYCLFSQFGRILDVVALKTPKLRGQAWICF 60

Query: 61  SEITAASNAVRQMQNFPFYDKPIRIQYAKAKSDCIAKAEGTFVPKEKKKKQQEKGERKRH 120
           SEITAASNAVRQMQNFPFYDKPIRIQYAKAKSDCIAKAEGT+VPKEKKKKQ+EK +RKR 
Sbjct: 61  SEITAASNAVRQMQNFPFYDKPIRIQYAKAKSDCIAKAEGTYVPKEKKKKQEEKADRKRR 120

Query: 121 AED--QTAGAANGPAAQTNGGPSASHCKTGAQEAIA-PNNILFVQNLPHETTSIMLQMLF 180
           A+D  QT  AANG  +QTNGGPSA+H +TGAQEA A PN+ILFV+NLPHETTSIMLQMLF
Sbjct: 121 ADDAHQTGAAANGTGSQTNGGPSAAHRRTGAQEAAASPNSILFVENLPHETTSIMLQMLF 180

Query: 181 QQYPGFREVRMIEAKPGIAFVEFDDEDESAIAMQALQGFKVTPQNPMEITYAKK 232
           QQYPGFREVRMIEAKPGIAFVEFD+ED + IAMQALQGFKVTPQNPMEITYAKK
Sbjct: 181 QQYPGFREVRMIEAKPGIAFVEFDNEDVATIAMQALQGFKVTPQNPMEITYAKK 234

[Close]

BLAST of Spo06380.1 vs. NCBI nr
Match: gi|720003433|ref|XP_010256991.1| (PREDICTED: U2 small nuclear ribonucleoprotein B'' [Nelumbo nucifera])

HSP 1 Score: 368.2 bits (944), Expect = 1.000e-98
Identity = 191/235 (81.28%), Postives = 211/235 (89.79%), Query Frame = 1


		  
Query: 2   MLSGDIPPNQSIYVKNLNEKVKKEELKRSLYCLFSQFGRILDVVALKTSKLRGQAWICFS 61
           MLSGDIPPNQ+IY+KNLNEKVKKEELKRSLY LFSQ+GRILDVVALKTSKLRGQAW+ FS
Sbjct: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTSKLRGQAWVAFS 60

Query: 62  EITAASNAVRQMQNFPFYDKPIRIQYAKAKSDCIAKAEGTFVPKEKKKKQQEKGERKRHA 121
           E+TAASNAVRQMQNFPFYDKP+RIQYAK KSDC+AKA+GT++P+EKKKKQ+EK ERKR A
Sbjct: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGTYIPREKKKKQEEKAERKRKA 120

Query: 122 E--DQTAGAANGPAAQTNGGPSA--SHCKTGAQE-AIAPNNILFVQNLPHETTSIMLQML 181
           E  +  A AANG A  +NGGP+A     K GAQE A APNNILF+QNLPHETTS+MLQML
Sbjct: 121 EAPNSAAAAANGRADHSNGGPAAPFQQGKPGAQEAAAAPNNILFIQNLPHETTSMMLQML 180

Query: 182 FQQYPGFREVRMIEAKPGIAFVEFDDEDESAIAMQALQGFKVTPQNPMEITYAKK 232
           FQQYPGFREVRMIEAKPGIAFVEF DE +S+IAMQALQGFK+TPQNPM ITYAKK
Sbjct: 181 FQQYPGFREVRMIEAKPGIAFVEFGDEVQSSIAMQALQGFKITPQNPMVITYAKK 235

[Close]

BLAST of Spo06380.1 vs. NCBI nr
Match: gi|568827584|ref|XP_006468132.1| (PREDICTED: U2 small nuclear ribonucleoprotein B'' 2 [Citrus sinensis])

HSP 1 Score: 361.7 bits (927), Expect = 9.600e-97
Identity = 178/231 (77.06%), Postives = 207/231 (89.61%), Query Frame = 1


		  
Query: 2   MLSGDIPPNQSIYVKNLNEKVKKEELKRSLYCLFSQFGRILDVVALKTSKLRGQAWICFS 61
           M++GDIPPNQ+IY+KNLNEK+KKEELKRSLYCLFSQ+GRI DVVALKT KLRGQAW+ FS
Sbjct: 1   MITGDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFS 60

Query: 62  EITAASNAVRQMQNFPFYDKPIRIQYAKAKSDCIAKAEGTFVPKEKKKKQQEKGERKRHA 121
           E+TAASNAVRQMQNFPFYDKP+RIQYAK+KSDC+AK +G+FVP+EKKKKQ+EK ERKR A
Sbjct: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRA 120

Query: 122 ED-QTAGAANGPAAQTNGGPSASHCKTGAQEAIAPNNILFVQNLPHETTSIMLQMLFQQY 181
           E+ Q +  ANG  AQ+NGG +AS      QE  APNNILF+QNLPHETTS ML+MLFQQY
Sbjct: 121 EEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQY 180

Query: 182 PGFREVRMIEAKPGIAFVEFDDEDESAIAMQALQGFKVTPQNPMEITYAKK 232
           PGF+EVRMIEAKPGIAFVEF+D+ +S++AMQALQGFK+TPQNPM IT+AKK
Sbjct: 181 PGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231

[Close]

BLAST of Spo06380.1 vs. NCBI nr
Match: gi|359806644|ref|NP_001241278.1| (uncharacterized protein LOC100805822 [Glycine max])

HSP 1 Score: 361.3 bits (926), Expect = 1.300e-96
Identity = 179/232 (77.16%), Postives = 210/232 (90.52%), Query Frame = 1


		  
Query: 2   MLSGDIPPNQSIYVKNLNEKVKKEELKRSLYCLFSQFGRILDVVALKTSKLRGQAWICFS 61
           MLSGDIPPNQ+IY+KN+NEKVKK+ELKRSLYCLFSQ+GRILDV+ALKT KLRGQAW+CFS
Sbjct: 1   MLSGDIPPNQTIYIKNINEKVKKDELKRSLYCLFSQYGRILDVIALKTPKLRGQAWVCFS 60

Query: 62  EITAASNAVRQMQNFPFYDKPIRIQYAKAKSDCIAKAEGTFVPKEKKKKQQEKGERKRHA 121
           E+TAASNAVRQMQNFPFYDKP+RIQYAK KSDCIAK EGT+VP+EKKKKQ+EK ERKR A
Sbjct: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCIAKEEGTYVPREKKKKQEEKAERKRRA 120

Query: 122 ED-QTAGAANGPAAQTNGGPSASHCK-TGAQEAIAPNNILFVQNLPHETTSIMLQMLFQQ 181
           E+ Q +G ANG  + +NGGP+AS  +  GAQE  APNNILF++NLPHETT  ML+MLF+Q
Sbjct: 121 EEAQQSGVANGTHSASNGGPTASFRQGPGAQETAAPNNILFIENLPHETTGRMLEMLFEQ 180

Query: 182 YPGFREVRMIEAKPGIAFVEFDDEDESAIAMQALQGFKVTPQNPMEITYAKK 232
           YPGF+EVR+IEAKPGIAFV+F+DE +S++AMQAL GFK+TPQNPM IT+AKK
Sbjct: 181 YPGFKEVRLIEAKPGIAFVDFEDEVQSSMAMQALHGFKITPQNPMIITFAKK 232

[Close]

BLAST of Spo06380.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RH34_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_072430 PE=4 SV=1)

HSP 1 Score: 454.1 bits (1167), Expect = 9.900e-125
Identity = 231/231 (100.00%), Postives = 231/231 (100.00%), Query Frame = 1


		  
Query: 1   MMLSGDIPPNQSIYVKNLNEKVKKEELKRSLYCLFSQFGRILDVVALKTSKLRGQAWICF 60
           MMLSGDIPPNQSIYVKNLNEKVKKEELKRSLYCLFSQFGRILDVVALKTSKLRGQAWICF
Sbjct: 1   MMLSGDIPPNQSIYVKNLNEKVKKEELKRSLYCLFSQFGRILDVVALKTSKLRGQAWICF 60

Query: 61  SEITAASNAVRQMQNFPFYDKPIRIQYAKAKSDCIAKAEGTFVPKEKKKKQQEKGERKRH 120
           SEITAASNAVRQMQNFPFYDKPIRIQYAKAKSDCIAKAEGTFVPKEKKKKQQEKGERKRH
Sbjct: 61  SEITAASNAVRQMQNFPFYDKPIRIQYAKAKSDCIAKAEGTFVPKEKKKKQQEKGERKRH 120

Query: 121 AEDQTAGAANGPAAQTNGGPSASHCKTGAQEAIAPNNILFVQNLPHETTSIMLQMLFQQY 180
           AEDQTAGAANGPAAQTNGGPSASHCKTGAQEAIAPNNILFVQNLPHETTSIMLQMLFQQY
Sbjct: 121 AEDQTAGAANGPAAQTNGGPSASHCKTGAQEAIAPNNILFVQNLPHETTSIMLQMLFQQY 180

Query: 181 PGFREVRMIEAKPGIAFVEFDDEDESAIAMQALQGFKVTPQNPMEITYAKK 232
           PGFREVRMIEAKPGIAFVEFDDEDESAIAMQALQGFKVTPQNPMEITYAKK
Sbjct: 181 PGFREVRMIEAKPGIAFVEFDDEDESAIAMQALQGFKVTPQNPMEITYAKK 231

[Close]

BLAST of Spo06380.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BV14_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g175520 PE=4 SV=1)

HSP 1 Score: 403.3 bits (1035), Expect = 2.000e-109
Identity = 208/234 (88.89%), Postives = 220/234 (94.02%), Query Frame = 1


		  
Query: 1   MMLSGDIPPNQSIYVKNLNEKVKKEELKRSLYCLFSQFGRILDVVALKTSKLRGQAWICF 60
           MMLSGDIPPNQSIY+KNLNEKVKKEELKRSLYCLFSQFGRILDVVALKT KLRGQAWICF
Sbjct: 1   MMLSGDIPPNQSIYIKNLNEKVKKEELKRSLYCLFSQFGRILDVVALKTPKLRGQAWICF 60

Query: 61  SEITAASNAVRQMQNFPFYDKPIRIQYAKAKSDCIAKAEGTFVPKEKKKKQQEKGERKRH 120
           SEITAASNAVRQMQNFPFYDKPIRIQYAKAKSDCIAKAEGT+VPKEKKKKQ+EK +RKR 
Sbjct: 61  SEITAASNAVRQMQNFPFYDKPIRIQYAKAKSDCIAKAEGTYVPKEKKKKQEEKADRKRR 120

Query: 121 AED--QTAGAANGPAAQTNGGPSASHCKTGAQEAIA-PNNILFVQNLPHETTSIMLQMLF 180
           A+D  QT  AANG  +QTNGGPSA+H +TGAQEA A PN+ILFV+NLPHETTSIMLQMLF
Sbjct: 121 ADDAHQTGAAANGTGSQTNGGPSAAHRRTGAQEAAASPNSILFVENLPHETTSIMLQMLF 180

Query: 181 QQYPGFREVRMIEAKPGIAFVEFDDEDESAIAMQALQGFKVTPQNPMEITYAKK 232
           QQYPGFREVRMIEAKPGIAFVEFD+ED + IAMQALQGFKVTPQNPMEITYAKK
Sbjct: 181 QQYPGFREVRMIEAKPGIAFVEFDNEDVATIAMQALQGFKVTPQNPMEITYAKK 234

[Close]

BLAST of Spo06380.1 vs. UniProtKB/TrEMBL
Match: A0A067DUK7_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g026902mg PE=4 SV=1)

HSP 1 Score: 361.7 bits (927), Expect = 6.700e-97
Identity = 178/231 (77.06%), Postives = 207/231 (89.61%), Query Frame = 1


		  
Query: 2   MLSGDIPPNQSIYVKNLNEKVKKEELKRSLYCLFSQFGRILDVVALKTSKLRGQAWICFS 61
           M++GDIPPNQ+IY+KNLNEK+KKEELKRSLYCLFSQ+GRI DVVALKT KLRGQAW+ FS
Sbjct: 1   MITGDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFS 60

Query: 62  EITAASNAVRQMQNFPFYDKPIRIQYAKAKSDCIAKAEGTFVPKEKKKKQQEKGERKRHA 121
           E+TAASNAVRQMQNFPFYDKP+RIQYAK+KSDC+AK +G+FVP+EKKKKQ+EK ERKR A
Sbjct: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRA 120

Query: 122 ED-QTAGAANGPAAQTNGGPSASHCKTGAQEAIAPNNILFVQNLPHETTSIMLQMLFQQY 181
           E+ Q +  ANG  AQ+NGG +AS      QE  APNNILF+QNLPHETTS ML+MLFQQY
Sbjct: 121 EEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQY 180

Query: 182 PGFREVRMIEAKPGIAFVEFDDEDESAIAMQALQGFKVTPQNPMEITYAKK 232
           PGF+EVRMIEAKPGIAFVEF+D+ +S++AMQALQGFK+TPQNPM IT+AKK
Sbjct: 181 PGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231

[Close]

BLAST of Spo06380.1 vs. UniProtKB/TrEMBL
Match: V4T1I4_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002361mg PE=4 SV=1)

HSP 1 Score: 361.3 bits (926), Expect = 8.700e-97
Identity = 179/231 (77.49%), Postives = 207/231 (89.61%), Query Frame = 1


		  
Query: 2   MLSGDIPPNQSIYVKNLNEKVKKEELKRSLYCLFSQFGRILDVVALKTSKLRGQAWICFS 61
           M++GDIPPNQ+IY+KNLNEK+KKEELKRSLYCLFSQ+GRI DVVALKT KLRGQAW+ FS
Sbjct: 1   MITGDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFS 60

Query: 62  EITAASNAVRQMQNFPFYDKPIRIQYAKAKSDCIAKAEGTFVPKEKKKKQQEKGERKRHA 121
           E+TAASNAVRQMQNFPFYDKP+RIQYAK+KSDCIAK +G+FVP+EKKKKQ+EK ERKR A
Sbjct: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCIAKEDGSFVPREKKKKQEEKAERKRRA 120

Query: 122 ED-QTAGAANGPAAQTNGGPSASHCKTGAQEAIAPNNILFVQNLPHETTSIMLQMLFQQY 181
           E+ Q +  ANG  AQ+N G +AS      QEA APNNILF+QNLPHETTS ML+MLFQQY
Sbjct: 121 EEAQQSSMANGTGAQSNSGTAASFRNANTQEAAAPNNILFIQNLPHETTSSMLEMLFQQY 180

Query: 182 PGFREVRMIEAKPGIAFVEFDDEDESAIAMQALQGFKVTPQNPMEITYAKK 232
           PGF+EVRMIEAKPGIAFVEF+D+ +S++AMQALQGFK+TPQNPM IT+AKK
Sbjct: 181 PGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231

[Close]

BLAST of Spo06380.1 vs. UniProtKB/TrEMBL
Match: C6TN69_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_14G200400 PE=2 SV=1)

HSP 1 Score: 361.3 bits (926), Expect = 8.700e-97
Identity = 179/232 (77.16%), Postives = 210/232 (90.52%), Query Frame = 1


		  
Query: 2   MLSGDIPPNQSIYVKNLNEKVKKEELKRSLYCLFSQFGRILDVVALKTSKLRGQAWICFS 61
           MLSGDIPPNQ+IY+KN+NEKVKK+ELKRSLYCLFSQ+GRILDV+ALKT KLRGQAW+CFS
Sbjct: 1   MLSGDIPPNQTIYIKNINEKVKKDELKRSLYCLFSQYGRILDVIALKTPKLRGQAWVCFS 60

Query: 62  EITAASNAVRQMQNFPFYDKPIRIQYAKAKSDCIAKAEGTFVPKEKKKKQQEKGERKRHA 121
           E+TAASNAVRQMQNFPFYDKP+RIQYAK KSDCIAK EGT+VP+EKKKKQ+EK ERKR A
Sbjct: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCIAKEEGTYVPREKKKKQEEKAERKRRA 120

Query: 122 ED-QTAGAANGPAAQTNGGPSASHCK-TGAQEAIAPNNILFVQNLPHETTSIMLQMLFQQ 181
           E+ Q +G ANG  + +NGGP+AS  +  GAQE  APNNILF++NLPHETT  ML+MLF+Q
Sbjct: 121 EEAQQSGVANGTHSASNGGPTASFRQGPGAQETAAPNNILFIENLPHETTGRMLEMLFEQ 180

Query: 182 YPGFREVRMIEAKPGIAFVEFDDEDESAIAMQALQGFKVTPQNPMEITYAKK 232
           YPGF+EVR+IEAKPGIAFV+F+DE +S++AMQAL GFK+TPQNPM IT+AKK
Sbjct: 181 YPGFKEVRLIEAKPGIAFVDFEDEVQSSMAMQALHGFKITPQNPMIITFAKK 232

[Close]

BLAST of Spo06380.1 vs. ExPASy Swiss-Prot
Match: RU2B1_ARATH (U2 small nuclear ribonucleoprotein B'' OS=Arabidopsis thaliana GN=U2B'' PE=1 SV=1)

HSP 1 Score: 339.3 bits (869), Expect = 3.200e-92
Identity = 168/233 (72.10%), Postives = 202/233 (86.70%), Query Frame = 1


		  
Query: 2   MLSGDIPPNQSIYVKNLNEKVKKEELKRSLYCLFSQFGRILDVVALKTSKLRGQAWICFS 61
           ML+ DIPPNQSIY++NLNE++KKEELKRSLYCLFSQFGRILDVVALKT KLRGQAW+ FS
Sbjct: 1   MLTADIPPNQSIYIQNLNERIKKEELKRSLYCLFSQFGRILDVVALKTPKLRGQAWVTFS 60

Query: 62  EITAASNAVRQMQNFPFYDKPIRIQYAKAKSDCIAKAEGTFVPKEKKKKQQEKGERKRHA 121
           E+TAA +AVRQMQNFPFYDKP+R+QYAKAKSDC+AKAEGTFVPK+KK+KQ+EK ERKR  
Sbjct: 61  EVTAAGHAVRQMQNFPFYDKPMRLQYAKAKSDCLAKAEGTFVPKDKKRKQEEKVERKRE- 120

Query: 122 EDQTAGAANGPAA---QTNGGPSASHCKTGAQEAIAPNNILFVQNLPHETTSIMLQMLFQ 181
           + Q    ANGP+A     N G  A   +   QE + PNNILF+QNLPHETTS+MLQ+LF+
Sbjct: 121 DSQRPNTANGPSANGPSANNGVPAPSFQPSGQETMPPNNILFIQNLPHETTSMMLQLLFE 180

Query: 182 QYPGFREVRMIEAKPGIAFVEFDDEDESAIAMQALQGFKVTPQNPMEITYAKK 232
           QYPGF+E+RMI+AKPGIAFVE++D+ +++IAMQ LQGFK+TPQNPM I++AKK
Sbjct: 181 QYPGFKEIRMIDAKPGIAFVEYEDDVQASIAMQPLQGFKITPQNPMVISFAKK 232

[Close]

BLAST of Spo06380.1 vs. ExPASy Swiss-Prot
Match: RU2B2_ARATH (U2 small nuclear ribonucleoprotein B'' 2 OS=Arabidopsis thaliana GN=At1g06960 PE=1 SV=1)

HSP 1 Score: 326.2 bits (835), Expect = 2.800e-88
Identity = 162/230 (70.43%), Postives = 197/230 (85.65%), Query Frame = 1


		  
Query: 2   MLSGDIPPNQSIYVKNLNEKVKKEELKRSLYCLFSQFGRILDVVALKTSKLRGQAWICFS 61
           ML+ DIPPNQSIY+K++NEK+KKEELKRSLYCLFSQFGR+LDVVALKT KLRGQAW+ F+
Sbjct: 1   MLTADIPPNQSIYIKHINEKIKKEELKRSLYCLFSQFGRLLDVVALKTPKLRGQAWVVFT 60

Query: 62  EITAASNAVRQMQNFPFYDKPIRIQYAKAKSDCIAKAEGTFVPKEKKKKQQEKGERKRHA 121
           E+TAASNAVRQMQNFPFYDKP+RIQYAK+KSD + KAEG+FVPKEKK KQ+EK ERKRHA
Sbjct: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDYVTKAEGSFVPKEKKMKQEEKVERKRHA 120

Query: 122 EDQTAGAANGPAAQTNGGPSASHCKTGAQEAIAPNNILFVQNLPHETTSIMLQMLFQQYP 181
           E+    +    A   NG P      +G Q+ + PNNILF+ NLP ET S+MLQ+LF+QYP
Sbjct: 121 EETQQPSMPNGATTQNGMPVPPFQPSG-QDTMPPNNILFIHNLPIETNSMMLQLLFEQYP 180

Query: 182 GFREVRMIEAKPGIAFVEFDDEDESAIAMQALQGFKVTPQNPMEITYAKK 232
           GF+E+RMIEAKPGIAFVE++D+ +S++AMQALQGFK+TPQNPM +++AKK
Sbjct: 181 GFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQGFKITPQNPMVVSFAKK 229

[Close]

BLAST of Spo06380.1 vs. ExPASy Swiss-Prot
Match: RU2B_ORYSI (U2 small nuclear ribonucleoprotein B'' OS=Oryza sativa subsp. indica GN=OsI_11177 PE=3 SV=1)

HSP 1 Score: 303.9 bits (777), Expect = 1.500e-81
Identity = 161/233 (69.10%), Postives = 190/233 (81.55%), Query Frame = 1


		  
Query: 2   MLSGDIPPNQSIYVKNLNEKVKKEELKRSLYCLFSQFGRILDVVALKTSKLRGQAWICFS 61
           MLSGDIPPNQ++Y++NLNEKVKKEELKRSLY L SQ+GRILDVVALKT KLRGQAW+ FS
Sbjct: 1   MLSGDIPPNQTVYLRNLNEKVKKEELKRSLYALCSQYGRILDVVALKTPKLRGQAWVVFS 60

Query: 62  EITAASNAVRQMQNFPFYDKPIRIQYAKAKSDCIAKAEGTFVPKEKKKKQQEK-GERKRH 121
           EITAA+NA R +Q F FY K +R+QYAK KSDC+A  +G+  PKEK+KKQ+EK  E+KR 
Sbjct: 61  EITAATNAFRGLQEFDFYGKRMRVQYAKTKSDCLATEDGSTAPKEKRKKQEEKAAEKKRR 120

Query: 122 AEDQTAGAANGPAAQTNG-GPSASHC-KTGAQEAIAPNNILFVQNLPHETTSIMLQMLFQ 181
           AE+      N  AAQ+NG G  AS   KT  +    PNNILF+QNLP ETTS+MLQ+LFQ
Sbjct: 121 AEEAQQSGPNA-AAQSNGTGYQASRLGKTSQEPPAPPNNILFIQNLPAETTSMMLQILFQ 180

Query: 182 QYPGFREVRMIEAKPGIAFVEFDDEDESAIAMQALQGFKVTPQNPMEITYAKK 232
           QYPGFREVRMIEAKPGIAFVE++D+ +S +AMQALQGFK+TP NPM I+YAKK
Sbjct: 181 QYPGFREVRMIEAKPGIAFVEYEDDSQSMVAMQALQGFKITPYNPMAISYAKK 232

[Close]

BLAST of Spo06380.1 vs. ExPASy Swiss-Prot
Match: RU2B_ORYSJ (U2 small nuclear ribonucleoprotein B'' OS=Oryza sativa subsp. japonica GN=Os03g0298800 PE=2 SV=1)

HSP 1 Score: 302.8 bits (774), Expect = 3.300e-81
Identity = 160/233 (68.67%), Postives = 190/233 (81.55%), Query Frame = 1


		  
Query: 2   MLSGDIPPNQSIYVKNLNEKVKKEELKRSLYCLFSQFGRILDVVALKTSKLRGQAWICFS 61
           MLSGDIPPNQ++Y++NLNEKVKKEELKRSLY L SQ+GRILDVVALKT KLRGQAW+ FS
Sbjct: 1   MLSGDIPPNQTVYLRNLNEKVKKEELKRSLYALCSQYGRILDVVALKTPKLRGQAWVVFS 60

Query: 62  EITAASNAVRQMQNFPFYDKPIRIQYAKAKSDCIAKAEGTFVPKEKKKKQQEK-GERKRH 121
           EITAA+NA R +Q F FY K +R+QYAK +SDC+A  +G+  PKEK+KKQ+EK  E+KR 
Sbjct: 61  EITAATNAFRGLQEFDFYGKRMRVQYAKTRSDCLATEDGSTAPKEKRKKQEEKAAEKKRR 120

Query: 122 AEDQTAGAANGPAAQTNG-GPSASHC-KTGAQEAIAPNNILFVQNLPHETTSIMLQMLFQ 181
           AE+      N  AAQ+NG G  AS   KT  +    PNNILF+QNLP ETTS+MLQ+LFQ
Sbjct: 121 AEEAQQSGPNA-AAQSNGTGYQASRLGKTSQEPPAPPNNILFIQNLPAETTSMMLQILFQ 180

Query: 182 QYPGFREVRMIEAKPGIAFVEFDDEDESAIAMQALQGFKVTPQNPMEITYAKK 232
           QYPGFREVRMIEAKPGIAFVE++D+ +S +AMQALQGFK+TP NPM I+YAKK
Sbjct: 181 QYPGFREVRMIEAKPGIAFVEYEDDSQSMVAMQALQGFKITPYNPMAISYAKK 232

[Close]

BLAST of Spo06380.1 vs. ExPASy Swiss-Prot
Match: RU1A_ORYSI (U1 small nuclear ribonucleoprotein A OS=Oryza sativa subsp. indica GN=OsI_18512 PE=3 SV=1)

HSP 1 Score: 254.6 bits (649), Expect = 1.000e-66
Identity = 135/234 (57.69%), Postives = 170/234 (72.65%), Query Frame = 1


		  
Query: 8   PPNQSIYVKNLNEKVKKEELKRSLYCLFSQFGRILDVVALKTSKLRGQAWICFSEITAAS 67
           PPN +IY+ NLNEK+K EELK+SL  +FSQFG+ILDV+A KT K +GQAW+ F ++ +A+
Sbjct: 20  PPNVTIYINNLNEKIKLEELKKSLRAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASAT 79

Query: 68  NAVRQMQNFPFYDKPIRIQYAKAKSDCIAKAEGTFVPKEKKKKQQEKGERK----RHAED 127
            A++ MQ+FPF++KP+RIQYAK KSD IAKA+GTFVP+E++K+  EK E+K    +H + 
Sbjct: 80  EALKSMQDFPFHNKPMRIQYAKTKSDIIAKADGTFVPRERRKRNDEKPEKKQKREQHHDV 139

Query: 128 QTAGAANGPAAQTNGGPSASHCK-TGAQ-----EAIAPNNILFVQNLPHETTSIMLQMLF 187
              G          G P  S     GAQ     E I PNNILFVQNLPHETT +MLQMLF
Sbjct: 140 SQVGLGVNAYPGVYGAPPLSQLPFAGAQKVMMPEIIVPNNILFVQNLPHETTPMMLQMLF 199

Query: 188 QQYPGFREVRMIEAKPGIAFVEFDDEDESAIAMQALQGFKVTPQNPMEITYAKK 232
            QYPGF+EVRM+EAKPGIAFVE+ DE ++  AM  LQGFK+T  N M I+YAKK
Sbjct: 200 CQYPGFKEVRMVEAKPGIAFVEYGDEGQATAAMNHLQGFKITKDNQMLISYAKK 253

[Close]

BLAST of Spo06380.1 vs. TAIR (Arabidopsis)
Match: AT2G30260.1 (U2 small nuclear ribonucleoprotein B)

HSP 1 Score: 339.3 bits (869), Expect = 1.800e-93
Identity = 168/233 (72.10%), Postives = 202/233 (86.70%), Query Frame = 1


		  
Query: 2   MLSGDIPPNQSIYVKNLNEKVKKEELKRSLYCLFSQFGRILDVVALKTSKLRGQAWICFS 61
           ML+ DIPPNQSIY++NLNE++KKEELKRSLYCLFSQFGRILDVVALKT KLRGQAW+ FS
Sbjct: 1   MLTADIPPNQSIYIQNLNERIKKEELKRSLYCLFSQFGRILDVVALKTPKLRGQAWVTFS 60

Query: 62  EITAASNAVRQMQNFPFYDKPIRIQYAKAKSDCIAKAEGTFVPKEKKKKQQEKGERKRHA 121
           E+TAA +AVRQMQNFPFYDKP+R+QYAKAKSDC+AKAEGTFVPK+KK+KQ+EK ERKR  
Sbjct: 61  EVTAAGHAVRQMQNFPFYDKPMRLQYAKAKSDCLAKAEGTFVPKDKKRKQEEKVERKRE- 120

Query: 122 EDQTAGAANGPAA---QTNGGPSASHCKTGAQEAIAPNNILFVQNLPHETTSIMLQMLFQ 181
           + Q    ANGP+A     N G  A   +   QE + PNNILF+QNLPHETTS+MLQ+LF+
Sbjct: 121 DSQRPNTANGPSANGPSANNGVPAPSFQPSGQETMPPNNILFIQNLPHETTSMMLQLLFE 180

Query: 182 QYPGFREVRMIEAKPGIAFVEFDDEDESAIAMQALQGFKVTPQNPMEITYAKK 232
           QYPGF+E+RMI+AKPGIAFVE++D+ +++IAMQ LQGFK+TPQNPM I++AKK
Sbjct: 181 QYPGFKEIRMIDAKPGIAFVEYEDDVQASIAMQPLQGFKITPQNPMVISFAKK 232

[Close]

BLAST of Spo06380.1 vs. TAIR (Arabidopsis)
Match: AT1G06960.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 326.2 bits (835), Expect = 1.600e-89
Identity = 162/230 (70.43%), Postives = 197/230 (85.65%), Query Frame = 1


		  
Query: 2   MLSGDIPPNQSIYVKNLNEKVKKEELKRSLYCLFSQFGRILDVVALKTSKLRGQAWICFS 61
           ML+ DIPPNQSIY+K++NEK+KKEELKRSLYCLFSQFGR+LDVVALKT KLRGQAW+ F+
Sbjct: 1   MLTADIPPNQSIYIKHINEKIKKEELKRSLYCLFSQFGRLLDVVALKTPKLRGQAWVVFT 60

Query: 62  EITAASNAVRQMQNFPFYDKPIRIQYAKAKSDCIAKAEGTFVPKEKKKKQQEKGERKRHA 121
           E+TAASNAVRQMQNFPFYDKP+RIQYAK+KSD + KAEG+FVPKEKK KQ+EK ERKRHA
Sbjct: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDYVTKAEGSFVPKEKKMKQEEKVERKRHA 120

Query: 122 EDQTAGAANGPAAQTNGGPSASHCKTGAQEAIAPNNILFVQNLPHETTSIMLQMLFQQYP 181
           E+    +    A   NG P      +G Q+ + PNNILF+ NLP ET S+MLQ+LF+QYP
Sbjct: 121 EETQQPSMPNGATTQNGMPVPPFQPSG-QDTMPPNNILFIHNLPIETNSMMLQLLFEQYP 180

Query: 182 GFREVRMIEAKPGIAFVEFDDEDESAIAMQALQGFKVTPQNPMEITYAKK 232
           GF+E+RMIEAKPGIAFVE++D+ +S++AMQALQGFK+TPQNPM +++AKK
Sbjct: 181 GFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQGFKITPQNPMVVSFAKK 229

[Close]

BLAST of Spo06380.1 vs. TAIR (Arabidopsis)
Match: AT2G47580.1 (spliceosomal protein U1A)

HSP 1 Score: 246.9 bits (629), Expect = 1.200e-65
Identity = 138/239 (57.74%), Postives = 169/239 (70.71%), Query Frame = 1


		  
Query: 6   DIPPNQSIYVKNLNEKVKKEELKRSLYCLFSQFGRILDVVALKTSKLRGQAWICFSEITA 65
           ++ PNQ+IY+ NLNEKVK +ELK+SL  +FSQFG+IL+++A KT K +GQAW+ F    +
Sbjct: 13  EVSPNQTIYINNLNEKVKLDELKKSLNAVFSQFGKILEILAFKTFKHKGQAWVVFDNTES 72

Query: 66  ASNAVRQMQNFPFYDKPIRIQYAKAKSDCIAKAEGTFVPKEKKKKQQEKGERKR-----H 125
           AS A+ +M NFPFYDK +RIQYAK KSD +AKA+GTFVP+EK+K+ +EKG  K+     H
Sbjct: 73  ASTAIAKMNNFPFYDKEMRIQYAKTKSDVVAKADGTFVPREKRKRHEEKGGGKKKKDQHH 132

Query: 126 AEDQTAGAAN-------GPAAQTNGGPSASHCKTGAQEAIA-PNNILFVQNLPHETTSIM 185
              Q     N       G A   +  P     K    EA A PNNILFVQNLPHETT ++
Sbjct: 133 DSTQMGMPMNSAYPGVYGAAPPLSQVPYPGGMKPNMPEAPAPPNNILFVQNLPHETTPMV 192

Query: 186 LQMLFQQYPGFREVRMIEAKPGIAFVEFDDEDESAIAMQALQGFKVTPQNPMEITYAKK 232
           LQMLF QY GF+EVRMIEAKPGIAFVEF DE +S +AMQ LQGFK+  QN M ITYAKK
Sbjct: 193 LQMLFCQYQGFKEVRMIEAKPGIAFVEFADEMQSTVAMQGLQGFKI-QQNQMLITYAKK 250

The following BLAST results are available for this feature:

BLAST of Spo06380.1 vs. NCBI nr
BLAST of Spo06380.1 vs. UniProtKB/TrEMBL
BLAST of Spo06380.1 vs. ExPASy Swiss-Prot
BLAST of Spo06380.1 vs. TAIR (Arabidopsis)

BLAST of Spo06380.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902219297\|gb\|KNA18269.1\|	1.4e-124	100.	hypothetical protein SOVF_0724...	[more]
gi\|731349344\|ref\|XP_010685946.1\|	2.9e-109	88.8	PREDICTED: U2 small nuclear ri...	[more]
gi\|720003433\|ref\|XP_010256991.1\|	1.0e-98	81.2	PREDICTED: U2 small nuclear ri...	[more]
gi\|568827584\|ref\|XP_006468132.1\|	9.6e-97	77.0	PREDICTED: U2 small nuclear ri...	[more]
gi\|359806644\|ref\|NP_001241278.1\|	1.3e-96	77.1	uncharacterized protein LOC100...	[more]

BLAST of Spo06380.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9RH34_SPIOL	9.9e-125	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8BV14_BETVU	2.0e-109	88.8	Uncharacterized protein OS=Bet...	[more]
A0A067DUK7_CITSI	6.7e-97	77.0	Uncharacterized protein OS=Cit...	[more]
V4T1I4_9ROSI	8.7e-97	77.4	Uncharacterized protein OS=Cit...	[more]
C6TN69_SOYBN	8.7e-97	77.1	Uncharacterized protein OS=Gly...	[more]

BLAST of Spo06380.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5


Match Name	E-value	Identity	Description
RU2B1_ARATH	3.2e-92	72.1	U2 small nuclear ribonucleopro...	[more]
RU2B2_ARATH	2.8e-88	70.4	U2 small nuclear ribonucleopro...	[more]
RU2B_ORYSI	1.5e-81	69.1	U2 small nuclear ribonucleopro...	[more]
RU2B_ORYSJ	3.3e-81	68.6	U2 small nuclear ribonucleopro...	[more]
RU1A_ORYSI	1.0e-66	57.6	U1 small nuclear ribonucleopro...	[more]

BLAST of Spo06380.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 3


Match Name	E-value	Identity	Description
AT2G30260.1	1.8e-93	72.1	U2 small nuclear ribonucleopro...	[more]
AT1G06960.1	1.6e-89	70.4	RNA-binding (RRM/RBD/RNP motif...	[more]
AT2G47580.1	1.2e-65	57.7	spliceosomal protein U1A	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 13..84 score: 7.0E-9coord: 159..218 score: 6.1
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 12..86 score: 2.5E-12coord: 158..227 score: 3.6
IPR000504	RNA recognition motif domain	PROFILE	PS50102	RRM	coord: 11..90 score: 14.266coord: 157..231 score: 14
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	3.30.70.330		coord: 8..93 score: 1.6E-23coord: 149..230 score: 5.4
IPR012677	Nucleotide-binding alpha-beta plait domain	unknown	SSF54928	RNA-binding domain, RBD	coord: 154..218 score: 1.97E-27coord: 9..100 score: 1.97
IPR024888	U1 small nuclear ribonucleoprotein A/U2 small nuclear ribonucleoprotein B''	PANTHER	PTHR10501	U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B	coord: 2..231 score: 2.6E

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:1990904	ribonucleoprotein complex
cellular_component	GO:0019013	viral nucleocapsid
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0017069	snRNA binding