Spo06394.1 (mRNA)

Overview
NameSpo06394.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
LocationSpoScf_04794 : 708 .. 962 (+)
Sequence length255
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CCCATTCTCTGCTTCACCAATTCAATCCCATTTTCCCTCTTATCTCTCTTCCCCTCTCTGGTTCCTCTCTGGTTCTTCTCTCTGGGCAAGACTGAAACCACAACACTCACTGCACACACCGCACTGCTCCCCCCGCGTCGCCGGTGTTGTTCCCTCACCCATCGCCGTTGCTGTTCCCCTCCTCCACCGCGTCGCAGCTTCTCCTCCACGGCGTCGCAGCTGCTCCTCCTCCACCTCCACCTTGTATTCTTCTTA

mRNA sequence

CCCATTCTCTGCTTCACCAATTCAATCCCATTTTCCCTCTTATCTCTCTTCCCCTCTCTGGTTCCTCTCTGGTTCTTCTCTCTGGGCAAGACTGAAACCACAACACTCACTGCACACACCGCACTGCTCCCCCCGCGTCGCCGGTGTTGTTCCCTCACCCATCGCCGTTGCTGTTCCCCTCCTCCACCGCGTCGCAGCTTCTCCTCCACGGCGTCGCAGCTGCTCCTCCTCCACCTCCACCTTGTATTCTTCTTA

Coding sequence (CDS)

CCCATTCTCTGCTTCACCAATTCAATCCCATTTTCCCTCTTATCTCTCTTCCCCTCTCTGGTTCCTCTCTGGTTCTTCTCTCTGGGCAAGACTGAAACCACAACACTCACTGCACACACCGCACTGCTCCCCCCGCGTCGCCGGTGTTGTTCCCTCACCCATCGCCGTTGCTGTTCCCCTCCTCCACCGCGTCGCAGCTTCTCCTCCACGGCGTCGCAGCTGCTCCTCCTCCACCTCCACCTTGTATTCTTCTTA

Protein sequence

PILCFTNSIPFSLLSLFPSLVPLWFFSLGKTETTTLTAHTALLPPRRRCCSLTHRRCCSPPPPRRSFSSTASQLLLLHLHLVFFL
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo06394Spo06394gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo06394.1Spo06394.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo06394.1.exon.1Spo06394.1.exon.1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo06394.1.CDS.1Spo06394.1.CDS.1CDS


Homology
[Close]
BLAST of Spo06394.1 vs. NCBI nr
Match: gi|902179215|gb|KNA09308.1| (hypothetical protein SOVF_154810, partial [Spinacia oleracea])

HSP 1 Score: 94.7 bits (234), Expect = 8.100e-17
Identity = 59/84 (70.24%), Postives = 60/84 (71.43%), Query Frame = 1 

		  

Query: 2  ILCFTNSIPFSLLSLFPSLVPLWFFSLGKTETTTLTAHTALLPPR---------RRCCSL 61
          ILCFTNSIP S   LFPSLVPLWFFSLGKT TTTLTAHT+LLPPR              L
Sbjct: 2  ILCFTNSIPSS--PLFPSLVPLWFFSLGKTRTTTLTAHTSLLPPRVAGAVPSPIADDVPL 61

Query: 62 THRRCCSPPPPRRSFSSTASQLLL 77
           HR   S PPPRRSFSSTASQLLL
Sbjct: 62 LHRVAAS-PPPRRSFSSTASQLLL 82
[Close]
BLAST of Spo06394.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QRK3_SPIOL (Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_154810 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 5.600e-17
Identity = 59/84 (70.24%), Postives = 60/84 (71.43%), Query Frame = 1 

		  

Query: 2  ILCFTNSIPFSLLSLFPSLVPLWFFSLGKTETTTLTAHTALLPPR---------RRCCSL 61
          ILCFTNSIP S   LFPSLVPLWFFSLGKT TTTLTAHT+LLPPR              L
Sbjct: 2  ILCFTNSIPSS--PLFPSLVPLWFFSLGKTRTTTLTAHTSLLPPRVAGAVPSPIADDVPL 61

Query: 62 THRRCCSPPPPRRSFSSTASQLLL 77
           HR   S PPPRRSFSSTASQLLL
Sbjct: 62 LHRVAAS-PPPRRSFSSTASQLLL 82
The following BLAST results are available for this feature:
BLAST of Spo06394.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 1
Match NameE-valueIdentityDescription
gi|902179215|gb|KNA09308.1|8.1e-1770.2hypothetical protein SOVF_1548... [more]
back to top
BLAST of Spo06394.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0K9QRK3_SPIOL5.6e-1770.2Uncharacterized protein (Fragm... [more]
back to top
BLAST of Spo06394.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Spo06394.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
back to top