Spo06473.1 (mRNA) | SpinachBase

Overview


Name	Spo06473.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	NADH-ubiquinone oxidoreductase 11 kDa subunit
Location	Super_scaffold_42 : 443638 .. 444836 (+)
Sequence length	514

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GCTAACCAGTTTCCCCCAAATCATCACGAGGTGGAGCTTGATTTAATTTAAATGACTGCTTAACCTTTATTTTCCTTTTCTTTTTTTCTTAAGATCTCCAATCTGCATCTCCTTCCTCCTCAGTCCTCCCGCATTCTCCTCCTCTTGAGACCCTAACAACAAAAGCAGCGTATTGTAGTTGTAGTTGTATCCATAGTCGTCGTCGCCTCTGCCGATCACCTCCCCTTCTCGGCTGCTTCTATTCTCGGTAATTATCTACAATCGATTTGGATTTTATTTGTAGTTTTCTAAATTGTTTAATGTATTCTGGGTTGGGTTTTTTGTTATCTTTGTTTTGGTGTTGTGAAATTCGTATTATACTTGTACGATATGTTTCGATTTTTCTGATTTCAAATTGTTAAATATATCCTGTTGGGTTTGTTTTGGTGTTTATGAGAAATTCTACTTGAAATTCGTATTATCCGATTCCATTTTTCTGACAATCACCGTTTTATCTTTCCTTGGGACCACGGCGGACGCCCCTCCTGCCCTGCCTCAGGGACGGGCCTGTTGGGGGTTAATTTGATTTTCTTGAGGAGGGAGCAGAGTAGAAAAGAGCAATAATTTAAGGGCATAATAAAGTTTAGTTTGATTGAATTAATATTTATGAGTTTAGTTTTTTTTTGTTGTTGTTGTATGATTGACATTGGTGGCCTTGACGTTTATGTTAGCTTTGTTTTCTTTGATTTCCATCATAAGATAAGGGAAGTGCCTATGTAAATGGAACCCTGGGGATCAGGTTACTTGCCTGTTAACATTCTCATCCCTTTACAGTGAGTGTGGTTGTGATTTGGCAATGAAGTTAAGCTAGAATTTCTTTTTGATGATGCCGGTGAATTCATGGATAGAGTTAAAGTTTGAAATTTGAATGGTGCATTGTGGTTGTTGCAGAGATGGGTTTCATCATGGAGTTTGCGGAGAACTTGGTTTTGAGGTTGATGGAAGATCCAAAAGAAAGGGATAGAAAATTCAGGGATCACCTGTATTCATTACAAGATCGATGCAAGAAAACCAAGGAAATGTGGAGCTTGCCCTTGAGGCCATATGGGTTTTGGACCTTTGAACGTCATAACTCTCAGCTAGCTTGGGATGCTCAGATTACCAATGTAACTGGTCGTAGGGATCCTTATGACGAGGTCCTTGAAGGGTCTTCTAAATAA

mRNA sequence

GCTAACCAGTTTCCCCCAAATCATCACGAGGTGGAGCTTGATTTAATTTAAATGACTGCTTAACCTTTATTTTCCTTTTCTTTTTTTCTTAAGATCTCCAATCTGCATCTCCTTCCTCCTCAGTCCTCCCGCATTCTCCTCCTCTTGAGACCCTAACAACAAAAGCAGCGTATTGTAGTTGTAGTTGTATCCATAGTCGTCGTCGCCTCTGCCGATCACCTCCCCTTCTCGGCTGCTTCTATTCTCGATGGGTTTCATCATGGAGTTTGCGGAGAACTTGGTTTTGAGGTTGATGGAAGATCCAAAAGAAAGGGATAGAAAATTCAGGGATCACCTGTATTCATTACAAGATCGATGCAAGAAAACCAAGGAAATGTGGAGCTTGCCCTTGAGGCCATATGGGTTTTGGACCTTTGAACGTCATAACTCTCAGCTAGCTTGGGATGCTCAGATTACCAATGTAACTGGTCGTAGGGATCCTTATGACGAGGTCCTTGAAGGGTCTTCTAAATAA

Coding sequence (CDS)

ATGGGTTTCATCATGGAGTTTGCGGAGAACTTGGTTTTGAGGTTGATGGAAGATCCAAAAGAAAGGGATAGAAAATTCAGGGATCACCTGTATTCATTACAAGATCGATGCAAGAAAACCAAGGAAATGTGGAGCTTGCCCTTGAGGCCATATGGGTTTTGGACCTTTGAACGTCATAACTCTCAGCTAGCTTGGGATGCTCAGATTACCAATGTAACTGGTCGTAGGGATCCTTATGACGAGGTCCTTGAAGGGTCTTCTAAATAA

Protein sequence

MGFIMEFAENLVLRLMEDPKERDRKFRDHLYSLQDRCKKTKEMWSLPLRPYGFWTFERHNSQLAWDAQITNVTGRRDPYDEVLEGSSK

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo06473	Spo06473	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo06473.1	Spo06473.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo06473.1.exon.1	Spo06473.1.exon.1	exon
Spo06473.1.exon.2	Spo06473.1.exon.2	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo06473.1.utr5p.1	Spo06473.1.utr5p.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo06473.1.CDS.1	Spo06473.1.CDS.1	CDS

Homology

[Close]

BLAST of Spo06473.1 vs. NCBI nr
Match: gi|902230042|gb|KNA21683.1| (hypothetical protein SOVF_040630 [Spinacia oleracea])

HSP 1 Score: 189.5 bits (480), Expect = 2.500e-45
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 1


		  
Query: 1  MGFIMEFAENLVLRLMEDPKERDRKFRDHLYSLQDRCKKTKEMWSLPLRPYGFWTFERHN 60
          MGFIMEFAENLVLRLMEDPKERDRKFRDHLYSLQDRCKKTKEMWSLPLRPYGFWTFERHN
Sbjct: 1  MGFIMEFAENLVLRLMEDPKERDRKFRDHLYSLQDRCKKTKEMWSLPLRPYGFWTFERHN 60

Query: 61 SQLAWDAQITNVTGRRDPYDEVLEGSSK 89
          SQLAWDAQITNVTGRRDPYDEVLEGSSK
Sbjct: 61 SQLAWDAQITNVTGRRDPYDEVLEGSSK 88

[Close]

BLAST of Spo06473.1 vs. NCBI nr
Match: gi|731319912|ref|XP_010670524.1| (PREDICTED: uncharacterized protein LOC104887566 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 179.1 bits (453), Expect = 3.400e-42
Identity = 83/88 (94.32%), Postives = 85/88 (96.59%), Query Frame = 1


		  
Query: 1  MGFIMEFAENLVLRLMEDPKERDRKFRDHLYSLQDRCKKTKEMWSLPLRPYGFWTFERHN 60
          MGFIMEFAENLVLRLMEDPKERDRKFR+HLY+LQD CKKTKEMWSLPLRPYGFWTFERHN
Sbjct: 1  MGFIMEFAENLVLRLMEDPKERDRKFREHLYALQDSCKKTKEMWSLPLRPYGFWTFERHN 60

Query: 61 SQLAWDAQITNVTGRRDPYDEVLEGSSK 89
          SQLAWDAQITNVTGRRDPYDEVLE  SK
Sbjct: 61 SQLAWDAQITNVTGRRDPYDEVLEEVSK 88

[Close]

BLAST of Spo06473.1 vs. NCBI nr
Match: gi|255547718|ref|XP_002514916.1| (PREDICTED: uncharacterized protein LOC8286798 [Ricinus communis])

HSP 1 Score: 167.2 bits (422), Expect = 1.300e-38
Identity = 74/88 (84.09%), Postives = 84/88 (95.45%), Query Frame = 1


		  
Query: 1  MGFIMEFAENLVLRLMEDPKERDRKFRDHLYSLQDRCKKTKEMWSLPLRPYGFWTFERHN 60
          MGFIMEFA++LVLRLMEDP+ERDRKFR+HLY ++DRCKKTKEMWSLPLRPYGFWTFERHN
Sbjct: 1  MGFIMEFAKDLVLRLMEDPRERDRKFREHLYEMKDRCKKTKEMWSLPLRPYGFWTFERHN 60

Query: 61 SQLAWDAQITNVTGRRDPYDEVLEGSSK 89
          SQLAWDAQI+ V GRRDPYD++L+ SSK
Sbjct: 61 SQLAWDAQISQVPGRRDPYDDLLQDSSK 88

[Close]

BLAST of Spo06473.1 vs. NCBI nr
Match: gi|802724293|ref|XP_012085678.1| (PREDICTED: uncharacterized protein LOC105644811 [Jatropha curcas])

HSP 1 Score: 163.7 bits (413), Expect = 1.500e-37
Identity = 71/86 (82.56%), Postives = 82/86 (95.35%), Query Frame = 1


		  
Query: 1  MGFIMEFAENLVLRLMEDPKERDRKFRDHLYSLQDRCKKTKEMWSLPLRPYGFWTFERHN 60
          MGFIMEFAENL+LRLMEDPKERDRKFR+H+Y+++DRC+KTKEMWS PLRPYGFWTFERHN
Sbjct: 1  MGFIMEFAENLILRLMEDPKERDRKFREHVYAMKDRCQKTKEMWSYPLRPYGFWTFERHN 60

Query: 61 SQLAWDAQITNVTGRRDPYDEVLEGS 87
          SQLAWDAQI+ V GRRDPYD++L+ S
Sbjct: 61 SQLAWDAQISQVPGRRDPYDDLLQDS 86

[Close]

BLAST of Spo06473.1 vs. NCBI nr
Match: gi|590692431|ref|XP_007044053.1| (NADH-ubiquinone oxidoreductase 11 kDa subunit [Theobroma cacao])

HSP 1 Score: 161.4 bits (407), Expect = 7.300e-37
Identity = 71/86 (82.56%), Postives = 80/86 (93.02%), Query Frame = 1


		  
Query: 1  MGFIMEFAENLVLRLMEDPKERDRKFRDHLYSLQDRCKKTKEMWSLPLRPYGFWTFERHN 60
          MGFIMEFAENLVLRLMEDPKERD+KFR+HLYS+++RC KTKEMWS PLRPYGFWTFERHN
Sbjct: 1  MGFIMEFAENLVLRLMEDPKERDKKFREHLYSVKERCNKTKEMWSYPLRPYGFWTFERHN 60

Query: 61 SQLAWDAQITNVTGRRDPYDEVLEGS 87
          +QL WDAQI+ V GRRDPYD++LE S
Sbjct: 61 AQLRWDAQISQVPGRRDPYDDLLENS 86

[Close]

BLAST of Spo06473.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RQD5_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_040630 PE=4 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 1.700e-45
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 1


		  
Query: 1  MGFIMEFAENLVLRLMEDPKERDRKFRDHLYSLQDRCKKTKEMWSLPLRPYGFWTFERHN 60
          MGFIMEFAENLVLRLMEDPKERDRKFRDHLYSLQDRCKKTKEMWSLPLRPYGFWTFERHN
Sbjct: 1  MGFIMEFAENLVLRLMEDPKERDRKFRDHLYSLQDRCKKTKEMWSLPLRPYGFWTFERHN 60

Query: 61 SQLAWDAQITNVTGRRDPYDEVLEGSSK 89
          SQLAWDAQITNVTGRRDPYDEVLEGSSK
Sbjct: 61 SQLAWDAQITNVTGRRDPYDEVLEGSSK 88

[Close]

BLAST of Spo06473.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CT86_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g041860 PE=4 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 2.300e-42
Identity = 83/88 (94.32%), Postives = 85/88 (96.59%), Query Frame = 1


		  
Query: 1  MGFIMEFAENLVLRLMEDPKERDRKFRDHLYSLQDRCKKTKEMWSLPLRPYGFWTFERHN 60
          MGFIMEFAENLVLRLMEDPKERDRKFR+HLY+LQD CKKTKEMWSLPLRPYGFWTFERHN
Sbjct: 1  MGFIMEFAENLVLRLMEDPKERDRKFREHLYALQDSCKKTKEMWSLPLRPYGFWTFERHN 60

Query: 61 SQLAWDAQITNVTGRRDPYDEVLEGSSK 89
          SQLAWDAQITNVTGRRDPYDEVLE  SK
Sbjct: 61 SQLAWDAQITNVTGRRDPYDEVLEEVSK 88

[Close]

BLAST of Spo06473.1 vs. UniProtKB/TrEMBL
Match: B9RME7_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1080390 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 9.200e-39
Identity = 74/88 (84.09%), Postives = 84/88 (95.45%), Query Frame = 1


		  
Query: 1  MGFIMEFAENLVLRLMEDPKERDRKFRDHLYSLQDRCKKTKEMWSLPLRPYGFWTFERHN 60
          MGFIMEFA++LVLRLMEDP+ERDRKFR+HLY ++DRCKKTKEMWSLPLRPYGFWTFERHN
Sbjct: 1  MGFIMEFAKDLVLRLMEDPRERDRKFREHLYEMKDRCKKTKEMWSLPLRPYGFWTFERHN 60

Query: 61 SQLAWDAQITNVTGRRDPYDEVLEGSSK 89
          SQLAWDAQI+ V GRRDPYD++L+ SSK
Sbjct: 61 SQLAWDAQISQVPGRRDPYDDLLQDSSK 88

[Close]

BLAST of Spo06473.1 vs. UniProtKB/TrEMBL
Match: A0A067JSF0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17960 PE=4 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 1.000e-37
Identity = 71/86 (82.56%), Postives = 82/86 (95.35%), Query Frame = 1


		  
Query: 1  MGFIMEFAENLVLRLMEDPKERDRKFRDHLYSLQDRCKKTKEMWSLPLRPYGFWTFERHN 60
          MGFIMEFAENL+LRLMEDPKERDRKFR+H+Y+++DRC+KTKEMWS PLRPYGFWTFERHN
Sbjct: 1  MGFIMEFAENLILRLMEDPKERDRKFREHVYAMKDRCQKTKEMWSYPLRPYGFWTFERHN 60

Query: 61 SQLAWDAQITNVTGRRDPYDEVLEGS 87
          SQLAWDAQI+ V GRRDPYD++L+ S
Sbjct: 61 SQLAWDAQISQVPGRRDPYDDLLQDS 86

[Close]

BLAST of Spo06473.1 vs. UniProtKB/TrEMBL
Match: A0A068V0D2_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00038240001 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 5.100e-37
Identity = 71/86 (82.56%), Postives = 80/86 (93.02%), Query Frame = 1


		  
Query: 1  MGFIMEFAENLVLRLMEDPKERDRKFRDHLYSLQDRCKKTKEMWSLPLRPYGFWTFERHN 60
          M FIMEFAENLVLR+MEDPKERDRKFR+HLY L+DRC KTKEMWSLPLRPYGFWTFERHN
Sbjct: 1  MKFIMEFAENLVLRMMEDPKERDRKFREHLYHLKDRCSKTKEMWSLPLRPYGFWTFERHN 60

Query: 61 SQLAWDAQITNVTGRRDPYDEVLEGS 87
          SQ+ WDAQI+ V GRRDPYD++L+G+
Sbjct: 61 SQIFWDAQISQVPGRRDPYDDLLQGA 86

[Close]

BLAST of Spo06473.1 vs. TAIR (Arabidopsis)
Match: AT1G67350.1 (unknown protein)

HSP 1 Score: 150.2 bits (378), Expect = 5.900e-37
Identity = 64/84 (76.19%), Postives = 76/84 (90.48%), Query Frame = 1


		  
Query: 1  MGFIMEFAENLVLRLMEDPKERDRKFRDHLYSLQDRCKKTKEMWSLPLRPYGFWTFERHN 60
          MGFIMEFAENLVLRLME+P+ERDRK R+H+Y + +RCKK KEMW+LP+RPYGFWTFERHN
Sbjct: 1  MGFIMEFAENLVLRLMENPEERDRKAREHIYEMHERCKKIKEMWALPIRPYGFWTFERHN 60

Query: 61 SQLAWDAQITNVTGRRDPYDEVLE 85
          +QL WD QI+ V GRRDPYD++LE
Sbjct: 61 AQLRWDPQISQVAGRRDPYDDLLE 84

The following BLAST results are available for this feature:

BLAST of Spo06473.1 vs. NCBI nr
BLAST of Spo06473.1 vs. UniProtKB/TrEMBL
BLAST of Spo06473.1 vs. ExPASy Swiss-Prot
BLAST of Spo06473.1 vs. TAIR (Arabidopsis)

BLAST of Spo06473.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902230042\|gb\|KNA21683.1\|	2.5e-45	100.	hypothetical protein SOVF_0406...	[more]
gi\|731319912\|ref\|XP_010670524.1\|	3.4e-42	94.3	PREDICTED: uncharacterized pro...	[more]
gi\|255547718\|ref\|XP_002514916.1\|	1.3e-38	84.0	PREDICTED: uncharacterized pro...	[more]
gi\|802724293\|ref\|XP_012085678.1\|	1.5e-37	82.5	PREDICTED: uncharacterized pro...	[more]
gi\|590692431\|ref\|XP_007044053.1\|	7.3e-37	82.5	NADH-ubiquinone oxidoreductase...	[more]

BLAST of Spo06473.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9RQD5_SPIOL	1.7e-45	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8CT86_BETVU	2.3e-42	94.3	Uncharacterized protein OS=Bet...	[more]
B9RME7_RICCO	9.2e-39	84.0	Putative uncharacterized prote...	[more]
A0A067JSF0_JATCU	1.0e-37	82.5	Uncharacterized protein OS=Jat...	[more]
A0A068V0D2_COFCA	5.1e-37	82.5	Uncharacterized protein OS=Cof...	[more]

BLAST of Spo06473.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Spo06473.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1


Match Name	E-value	Identity	Description
AT1G67350.1	5.9e-37	76.1	unknown protein	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37709	FAMILY NOT NAMED	coord: 2..87 score: 2.6
None	No IPR available	PANTHER	PTHR37709:SF1	SUBFAMILY NOT NAMED	coord: 2..87 score: 2.6