Spo06474.1 (mRNA)

Overview
NameSpo06474.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
LocationSuper_scaffold_42 : 445939 .. 448487 (+)
Sequence length713
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACAAAGATAGTTGGTTTTATTTGGGTTTTCTACCTGACCTGCAAGAAGAAAGTGATTAGAGCTGGTGGTGGATTTCAGATGTACTACAGCTTCAAGGATCGAACAACCGTTTTGGACGCCTGGTCAATTGTCAATGTCATGCTTGCATCAATGCTAGAAGTGGCAGTAATGGGTATATTGGCGCTTGCATTTGAAATTTGTTGAGATAGAAGTTTTGGATGGTTGAAGCAATAGTGAATTATATTTTGTAGCAACCTCTACCCGTTTGCTAATGTCTTGGTTGTGTAAGGTTTATTTTGTAGGTTGTTTTAGGAACTAGAATGTGAGATAACCTTAATGTCTTGGTCGTGTAAGGTTTACTTTTGTAGGTTGTTTAAGGAACTAGAATGTGAGATAAGCTCAAGAATTCTAAAAGATGACGAGTTGCTTGAAGAGTACAGTAGGTGCTTGTCTTTGTCTTTAAAGCCTTCTTGTACAATACCTACAATTATTTCTTGCCTTTGTCTTTAGAGCCTTCTTCTTGTACTATACTACAATGGTTTGCTCTTGTGTAGTATTAGACTGTGTGTGTTTAATATTACATGTAATAGGAACGGCCTGCATGTCATACCAAGAAAAGCGTGTTATTTTGGTAATGAATGCGATTCTGATTTTGTCAAAGATAAATATTTCCAGAAAAAAGCGCTTCTGTAATGTCTTGGTAATACTTCCTCTGTTTTCATTTCGTTGCAATAAGTGAAGTGGACCACAAACCCGACGGAGAAGCTGGAAAGGGTATATTAATTGCCCACTTGTCCTCACCTCCTTTCCTCCTGGCTGTCAGACCACCCATTCACTACCACTTGCCTGGCCACCCCTGCTCGGAAAAACCTCATCCCCTACTCCCAGCACCACAAGACGCTACAAACACTACGAATACAAACACTATGAATCTGACCACAACAAATATTTCAAGATCTGTAATTCTGAGGAGTGGTAGGAGATTGACTTGTAGGGTGCGGTGGCATTGGCTGTTTGGTATTGACTGGTAGGGGGAAATAATTAAGAATGAAGAGAGAAAGAAGGAACTTGTTTGTTAAAGAAGAGTAATTTTATAACTTCAGCATGTAAAGTTTACTATGTGTGGTAATGTTTCAATTAATATGGTAATTGAAAGGAACGTTTTGCAACCAAAAAAGCAGAGGAAGTATCTTGTTCCAAAGTGGTTATCTTTCTTGAGGAATCCTTTTTTAGCTAAATGATTTGTTGGGAACATTGTGTTGTTGATTGATTTTTTCAGTCAGCTAAACGCTGAACAGGAGTTCTGTGAGCTATAAGATACTACATTGGTGAGTACTACTTATACACTCATCCTAGCGAGGCAGGGATGCCTACTTCAGTGAGATTTTTGTCAGAGATAAAGATGTTATTTATTTCTATGTTTATCTTGTGTTATTTTTAGAAAATGGCAGTGCCAAGTTTAAACTGTAACAGCACTTCATTGTCGTTTGGGCAATAAGTTTTTCCCAGCTAAGAGCTTAGATATGTGCTGTGTATGTAGTTGCATGCACCTTTATAAGACACGAATATGCTAACCGCTGTTCTTTTGTTATGTTTTTCTTGTGCTGAATTTTGATGTTTGGTGGTTCAATGGTTGAAGAATCATCAACTTTGCATTTACTTATGTCCTCTTGTTGAGAAGTTGTTTGTCTGGTGGGCCTAGCTGGGTTTAGTTTCCTATATTCCACGGGTCTTAATCTTCTTGTTACTTCTTTATGGTCTACCACGTGGATTATTGTGTGCCATTTCTACCTACATGAAAAAGGGGTAAAAGAACTGGTGAGGAGAAGCATCGAAGTGGGTGATAATTTGCATGTTATTCTTTTCTCTTTGTGCTTTTTCAGTTTTGACTTCTCTGAAATCGAAATGTAAACGTAAAGAAATTACAGAGGGAAGGATGATAGAGAAAACAAAGTGAAAATTCTCCATTGATTATCTTTTACTGTTTCTTGAATTGGTTCATGATTTCAGTGAAACGTTTGTGATTGAAATGGTTTATGATATCAATGAAATATTTCTGATATGATGGAAATTTTCCTGAATGAAACATGTTTAAATTAACCTATTTCCCATATGTATGAAGAATTGTGATGATTTGGCAAGATCCTCCCAACAGTTTGATACTATGATTTCATTTTCTGTTCCTTTTCTCTCTGTCTGATGTGTGTTGTATGTTTTTGGTTGCAGGGAAGTGTATGCATGCTGAGATTCATATGTGTGAAGTCTCCATCTCAACTGCAGGGAGCATGTAGTTGCAAGGATTGTGTTTGTGTTTTGTTATTTCTTTGTTGAAACTAAATAGATTTCCCAGAGACAACAAAGTTCTCATCATTCACAACTCTATAACATCTTTTCTTAATGTTTTGTGTATTAGACTGTTGAATAAAGAGTAGCACATTATCAGATTGATGATTTACTTATTCTGATACTACTCATTTCTCTTGTTGATTCCTGAAATTCTTTTTGAGTGGATGCTGGTGATATGGTCTTATGCGCGCATTCTTCAG

mRNA sequence

ATGACAAAGATAGTTGGTTTTATTTGGGTTTTCTACCTGACCTGCAAGAAGAAAGTGATTAGAGCTGGTGGTGGATTTCAGATGTACTACAGCTTCAAGGATCGAACAACCGTTTTGGACGCCTGGTCAATTGTCAATGTCATGCTTGCATCAATGCTAGAAGTGGCAGTAATGGTGGACCACAAACCCGACGGAGAAGCTGGAAAGGGTATATTAATTGCCCACTTGTCCTCACCTCCTTTCCTCCTGGCTGTCAGACCACCCATTCACTACCACTTGCCTGGCCACCCCTGCTCGGAAAAACCTCATCCCCTACTCCCAGCACCACAAGACGCTACAAACACTACGAATACAAACACTATGAATCTGACCACAACAAATATTTCAAGATCTGGAAGTGTATGCATGCTGAGATTCATATGTGTGAAGTCTCCATCTCAACTGCAGGGAGCATGTAGTTGCAAGGATTGTGTTTGTGTTTTGTTATTTCTTTGTTGAAACTAAATAGATTTCCCAGAGACAACAAAGTTCTCATCATTCACAACTCTATAACATCTTTTCTTAATGTTTTGTGTATTAGACTGTTGAATAAAGAGTAGCACATTATCAGATTGATGATTTACTTATTCTGATACTACTCATTTCTCTTGTTGATTCCTGAAATTCTTTTTGAGTGGATGCTGGTGATATGGTCTTATGCGCGCATTCTTCAG

Coding sequence (CDS)

ATGACAAAGATAGTTGGTTTTATTTGGGTTTTCTACCTGACCTGCAAGAAGAAAGTGATTAGAGCTGGTGGTGGATTTCAGATGTACTACAGCTTCAAGGATCGAACAACCGTTTTGGACGCCTGGTCAATTGTCAATGTCATGCTTGCATCAATGCTAGAAGTGGCAGTAATGGTGGACCACAAACCCGACGGAGAAGCTGGAAAGGGTATATTAATTGCCCACTTGTCCTCACCTCCTTTCCTCCTGGCTGTCAGACCACCCATTCACTACCACTTGCCTGGCCACCCCTGCTCGGAAAAACCTCATCCCCTACTCCCAGCACCACAAGACGCTACAAACACTACGAATACAAACACTATGAATCTGACCACAACAAATATTTCAAGATCTGGAAGTGTATGCATGCTGAGATTCATATGTGTGAAGTCTCCATCTCAACTGCAGGGAGCATGTAGTTGCAAGGATTGTGTTTGTGTTTTGTTATTTCTTTGTTGA

Protein sequence

MTKIVGFIWVFYLTCKKKVIRAGGGFQMYYSFKDRTTVLDAWSIVNVMLASMLEVAVMVDHKPDGEAGKGILIAHLSSPPFLLAVRPPIHYHLPGHPCSEKPHPLLPAPQDATNTTNTNTMNLTTTNISRSGSVCMLRFICVKSPSQLQGACSCKDCVCVLLFLC
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo06474Spo06474gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo06474.1Spo06474.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo06474.1.exon.1Spo06474.1.exon.1exon
Spo06474.1.exon.2Spo06474.1.exon.2exon
Spo06474.1.exon.3Spo06474.1.exon.3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo06474.1.CDS.1Spo06474.1.CDS.1CDS
Spo06474.1.CDS.2Spo06474.1.CDS.2CDS
Spo06474.1.CDS.3Spo06474.1.CDS.3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo06474.1.utr3p.1Spo06474.1.utr3p.1three_prime_UTR


Homology
The following BLAST results are available for this feature:
BLAST of Spo06474.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Spo06474.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Spo06474.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Spo06474.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
back to top