Spo06536.1 (mRNA)

Overview
NameSpo06536.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
LocationSpoScf_00574 : 115801 .. 118622 (+)
Sequence length258
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTGATGCCGCATCATCAAGTGTTATTCCTCTTGCTCTTCAATGGTGGTTTAGGAATCCATTCAAAGACGATGGTAAGTTTTCTCTCATTTATTGATTTTAATCATTAATTTATGTTGTATTGAAGAGCAAGATGATATTTGATTATTGAATTGCAAATAATCTGACTAAATTTCACTTGAAATCATTCTAATCAATTTTGTTGTGTTGAAAAAAAGATGGTATTTGATTATCGATTTGCAATCAAATAACCTGTCTGAATTTCACCTGAAATTCGAATCAATTTGGTTGTATTGAAAAGATGATGATAATTGATTATCGAATTGCAGTTAATCTGTCTAATGTTCACCTGAAATCATTCGAATCAATTTTATTTTTTTTAGTAATTGGGGAAAGGGAAAATGTACGAATGTTCTTATTTCTGTTCTTTACGCCTGATAAATATCGTAAAAAACCTCGCCAATTTAAGCTACGAATCACCTTAATTATGTCTGTTAAATAAATTGTGTATTTCTTATTTGTGCAGAACCTGGTCTGTATGAATCAGGGACATTCTTTGTAGCTTTATTTTCGTATTTTTAGCTCTTTTCGTCAAGTGTTGGTTCTGTTAGATGTTATTCTCCAGATTTTTGAGTTTAAAGTTGCTGGAAATTGTCCAGAACAATATATATTGCTTGCTCATTGCGCGAAAAAGACAAAGAAACAGTCAATTGGTTTTTTAAGAGGAAAATCAATCAACTGCTTGATTGTATACAACAAACGTTTTTTTAATAAATTCATTTGTTTTTTAAGTAATGTATTGTAATCAAACCATGGAGTCATTTTTTGAATTGTTTTTAAGTAACGTATTCCACTCAAAAGCAATGATGATAGAACAAAAAGTAATCAAATTACCATGAAGTCATTTTTTGAAGTAATGTATTCCATCAAATGCCGTGATGATAGATTACAAAGTAATCAAACCATCAGAGGGAGGGAAGTTGTTTGCAGATACTACCTCCCTTCATGTCACTCATCTGATATGAGTCCCAAGGTCTTCTTTCTGAATGTCGAAACTATGTCAGAAGTGCTGATGTTATCAGCTCATGATATTAAACTGGATGATCAGTCAACTAGCAGTAATAATAACAGAAAGTGGTTTAATATCTTTGATTCTAATACAAACCTTAACATGATTCTAATAATAACAGCTTTGGCATAACCCCTGTCTAGCCTCTCTTTATATTGGTCCGTTTTTATTTTAGTTTAGTTGTGGCCAGGTCTATTTGAACTTTGATACTTAGTGGTATGTCTGTTAAAGAAATTGGGTATTAAAGTCGATTCTGGAAATCTGACCGGAATCAAATCAAGAAAGTTGGAGTTCTACTGTGCACTTGGTTCAATGCAGTCAACGGGTTGATTTTATTATTTCCAAAGTTTGTGCATGCAGTAGGAGGTTGTTGCTTGAATTGAAAATGTTGATTAACTTCTTTAGTTGGATAAACTATGGATAAACTTTTTCGTATTGACTGATTATTTAGTTACAATAACATTATTTTGTAGATGTTCCTGATTCTTTGTTATCATTGTTGTAGATGTTGGAGGCTGCATTCATGAAAGAGGTTGTAAATTGACCGATGCGAAGGTTAAACCATTTTAACTAGCTATTCTGGATACTTTTCACCAAGTTGCCATTTGATAGGTTGACCTTCCATTTAGACCAAGTTAAAAAGATAAAATAAATGAATCCAAACTATAGATAAGGCCTTTGGATCCATTTAATTTATCTGTTTCACTTGGTTCCCAGGTCTGGAAAAGGGAGGCAGCAAGATTTAGGCAGCAACTACAACTGTTAGAAGAGAGCGACCGGTAACTAATTTGCTCTCTTTTAATCCCTTTGTTTCTTTAGCAAGAGAGATGATTATGCAGGATAACGTTTTTACTTGGACTTCTTCTAGGAGAAAAACATAACATTCATCGCGTTCATTACAGAAAACTCATGGGTGAAGAGCTGTCAGATTTGAGCATAAGAGACGTAGAGAGTGTAGAAAACCTGTTGGAAGCAAGTTTAAAGGGGGTTCGATAGGAAATTGTCTTCTGAATTTGTCCTTAAAACTCCTTGGAAACAATGACCAATCAATATAAATTAGGGAAAAGAAACTACAAACTGACAATATAGGTTGCAACTGTTGGCCGAATCATTTTCTTCCTGATGAGATAAAAAATCCTGAAGCGATAGGTTAACATATACGTTAGTTTAGGCAACATGCATTAAAATATCTTGGATGCCAACTTTAAGATTGCTTAGTAATCTATACTTTAATATTAATGATGATGATTACTGGCTATTCAGTTTGACTTCAATATTAGGTTATCAGTTACAAATTTATAGGTCTTCCCAATAATTGTAAACATCAGTTACAGTTTTCAGCATTCACAGTCATGCATTTACTACTGACATCTCAATGCCTATATTGTGATCTATGTATATAATGCATCCAATGCTTCTTAACAATCATCTGTTCAAATCACTGTAAAAGGTATTCACACAATGTCAACAATCTTTGAGTTCCCAATACTAACAGTTTTAGGATTTCAGGAATAATTCCTCTTTGAAAGGTTAAACATATGGGTAATTTCATCTAACATGTTTTCCATGTTTCTTCTTTGCAGGAAGCTTATTGTTACTATCGCATTCATCTTAGTAAGTTCCCTTTTCCTAAAAGGTGCATTTTCATGCTAAATATATGTGAATAATAAAATCTGCAATTTATATAATTCAACACCTGCACATTGTTTCAGAATGTCTGCTGGAGCATAAAAGGCACAAGAACATTCTGA

mRNA sequence

ATGGGTGATGCCGCATCATCAAGTGTTATTCCTCTTGCTCTTCAATGGTGGTTTAGGAATCCATTCAAAGACGATGATGTTGGAGGCTGCATTCATGAAAGAGGTTGTAAATTGACCGATGCGAAGGTCTGGAAAAGGGAGGCAGCAAGATTTAGGCAGCAACTACAACTGTTAGAAGAGAGCGACCGGAAGCTTATTGTTACTATCGCATTCATCTTAAATGTCTGCTGGAGCATAAAAGGCACAAGAACATTCTGA

Coding sequence (CDS)

ATGGGTGATGCCGCATCATCAAGTGTTATTCCTCTTGCTCTTCAATGGTGGTTTAGGAATCCATTCAAAGACGATGATGTTGGAGGCTGCATTCATGAAAGAGGTTGTAAATTGACCGATGCGAAGGTCTGGAAAAGGGAGGCAGCAAGATTTAGGCAGCAACTACAACTGTTAGAAGAGAGCGACCGGAAGCTTATTGTTACTATCGCATTCATCTTAAATGTCTGCTGGAGCATAAAAGGCACAAGAACATTCTGA

Protein sequence

MGDAASSSVIPLALQWWFRNPFKDDDVGGCIHERGCKLTDAKVWKREAARFRQQLQLLEESDRKLIVTIAFILNVCWSIKGTRTF
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo06536Spo06536gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo06536.1Spo06536.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo06536.1.exon.1Spo06536.1.exon.1exon
Spo06536.1.exon.2Spo06536.1.exon.2exon
Spo06536.1.exon.3Spo06536.1.exon.3exon
Spo06536.1.exon.4Spo06536.1.exon.4exon
Spo06536.1.exon.5Spo06536.1.exon.5exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo06536.1.CDS.1Spo06536.1.CDS.1CDS
Spo06536.1.CDS.2Spo06536.1.CDS.2CDS
Spo06536.1.CDS.3Spo06536.1.CDS.3CDS
Spo06536.1.CDS.4Spo06536.1.CDS.4CDS
Spo06536.1.CDS.5Spo06536.1.CDS.5CDS


Homology
[Close]
BLAST of Spo06536.1 vs. NCBI nr
Match: gi|902073925|gb|KNA03001.1| (hypothetical protein SOVF_213320 [Spinacia oleracea])

HSP 1 Score: 183.0 bits (463), Expect = 2.300e-43
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 1 

		  

Query: 1  MGDAASSSVIPLALQWWFRNPFKDDDVGGCIHERGCKLTDAKVWKREAARFRQQLQLLEE 60
          MGDAASSSVIPLALQWWFRNPFKDDDVGGCIHERGCKLTDAKVWKREAARFRQQLQLLEE
Sbjct: 1  MGDAASSSVIPLALQWWFRNPFKDDDVGGCIHERGCKLTDAKVWKREAARFRQQLQLLEE 60

Query: 61 SDRKLIVTIAFILNVCWSIKGTRTF 86
          SDRKLIVTIAFILNVCWSIKGTRTF
Sbjct: 61 SDRKLIVTIAFILNVCWSIKGTRTF 85
[Close]
BLAST of Spo06536.1 vs. UniProtKB/TrEMBL
Match: A0A0K9Q8Z5_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_213320 PE=4 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 1.600e-43
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 1 

		  

Query: 1  MGDAASSSVIPLALQWWFRNPFKDDDVGGCIHERGCKLTDAKVWKREAARFRQQLQLLEE 60
          MGDAASSSVIPLALQWWFRNPFKDDDVGGCIHERGCKLTDAKVWKREAARFRQQLQLLEE
Sbjct: 1  MGDAASSSVIPLALQWWFRNPFKDDDVGGCIHERGCKLTDAKVWKREAARFRQQLQLLEE 60

Query: 61 SDRKLIVTIAFILNVCWSIKGTRTF 86
          SDRKLIVTIAFILNVCWSIKGTRTF
Sbjct: 61 SDRKLIVTIAFILNVCWSIKGTRTF 85
The following BLAST results are available for this feature:
BLAST of Spo06536.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 1
Match NameE-valueIdentityDescription
gi|902073925|gb|KNA03001.1|2.3e-43100.hypothetical protein SOVF_2133... [more]
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BLAST of Spo06536.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0K9Q8Z5_SPIOL1.6e-43100.Uncharacterized protein OS=Spi... [more]
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BLAST of Spo06536.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo06536.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 41..61
scor