Spo06718.1 (mRNA) | SpinachBase

Overview


Name	Spo06718.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	ATP-dependent RNA helicase eIF4A isoform 3
Location	SpoScf_04309 : 9353 .. 9817 (+)
Sequence length	204

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGATAGACTCCATAGAGACCTCTTCGTCTCCTTCGCAATCGCCTTCTTATACAATCGGGTACGTAATTGTACAATCCTCTAAATCTCCTCGTTTTTTTTTTACTTAATACGAAGTATTTTGTTTCCTTCCCCATTTTAATGGAGCTTCGCAATTCATCTTTCCTGCAGTCAGCCTCGCCACTTCTACCTCGCCGTCGATCGCCCCCCTTTCAAAATAGTACATATATATCTATCTCTCATAATTCTACATTTAGAAAGAAAACCTTAATTTTGAATTTTTCTGATTACTGAAAATTTTGGGATTATTTTGATATAATTTGCAGGAGACATTGATTGATTTGCTCGGAGTAGTAGGGCGAAGATCAGGACTTCCCATGGTAGTGTGTTGCAGTTCTCGCGATGAGCTTGACGCTGTTTGTTCTACCGTCTCTTCTCTTCCGTACATTTCGCTCTCCTCCTTG

mRNA sequence

ATGGCGATAGACTCCATAGAGACCTCTTCGTCTCCTTCGCAATCGCCTTCTTATACAATCGGGTACGAGACATTGATTGATTTGCTCGGAGTAGTAGGGCGAAGATCAGGACTTCCCATGGTAGTGTGTTGCAGTTCTCGCGATGAGCTTGACGCTGTTTGTTCTACCGTCTCTTCTCTTCCGTACATTTCGCTCTCCTCCTTG

Coding sequence (CDS)

ATGGCGATAGACTCCATAGAGACCTCTTCGTCTCCTTCGCAATCGCCTTCTTATACAATCGGGTACGAGACATTGATTGATTTGCTCGGAGTAGTAGGGCGAAGATCAGGACTTCCCATGGTAGTGTGTTGCAGTTCTCGCGATGAGCTTGACGCTGTTTGTTCTACCGTCTCTTCTCTTCCGTACATTTCGCTCTCCTCCTTG

Protein sequence

MAIDSIETSSSPSQSPSYTIGYETLIDLLGVVGRRSGLPMVVCCSSRDELDAVCSTVSSLPYISLSSL

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo06718	Spo06718	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo06718.1	Spo06718.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo06718.1.exon.1	Spo06718.1.exon.1	exon
Spo06718.1.exon.2	Spo06718.1.exon.2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo06718.1.CDS.1	Spo06718.1.CDS.1	CDS
Spo06718.1.CDS.2	Spo06718.1.CDS.2	CDS

Homology

[Close]

BLAST of Spo06718.1 vs. NCBI nr
Match: gi|902202941|gb|KNA14427.1| (hypothetical protein SOVF_107510, partial [Spinacia oleracea])

HSP 1 Score: 119.8 bits (299), Expect = 1.900e-24
Identity = 67/83 (80.72%), Postives = 67/83 (80.72%), Query Frame = 1


		  
Query: 1   MAIDSIETSSSPSQSPSYTIGY---------------ETLIDLLGVVGRRSGLPMVVCCS 60
           MAIDSIETSSSPSQSPSYTIG                ETLIDLLGVVGRRSGLPMVVCCS
Sbjct: 28  MAIDSIETSSSPSQSPSYTIGQPRHFYLAVDRPPFKIETLIDLLGVVGRRSGLPMVVCCS 87

Query: 61  SRDELDAVCSTVSSLPYISLSSL 69
           SRDELDAVCSTVSSLPYISLSSL
Sbjct: 88  SRDELDAVCSTVSSLPYISLSSL 110

[Close]

BLAST of Spo06718.1 vs. NCBI nr
Match: gi|731373347|ref|XP_010666624.1| (PREDICTED: uncharacterized protein LOC104883764 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 103.6 bits (257), Expect = 1.400e-19
Identity = 58/83 (69.88%), Postives = 61/83 (73.49%), Query Frame = 1


		  
Query: 1  MAIDSIETSSSPSQSPSYTIGY---------------ETLIDLLGVVGRRSGLPMVVCCS 60
          MA +  ET SSPSQSPSY +                 ETL+DLLGVVGRRSGLPMVVCCS
Sbjct: 1  MATEIGETPSSPSQSPSYPVSQLRHFYLAVDRPQFRVETLVDLLGVVGRRSGLPMVVCCS 60

Query: 61 SRDELDAVCSTVSSLPYISLSSL 69
          SRDELDAVCSTVSSLPYISLSSL
Sbjct: 61 SRDELDAVCSTVSSLPYISLSSL 83

[Close]

BLAST of Spo06718.1 vs. NCBI nr
Match: gi|590704716|ref|XP_007047236.1| (ATP-dependent RNA helicase eIF4A isoform 1 [Theobroma cacao])

HSP 1 Score: 91.7 bits (226), Expect = 5.500e-16
Identity = 52/85 (61.18%), Postives = 58/85 (68.24%), Query Frame = 1


		  
Query: 1  MAIDSIETSSSPSQSPSYTIG-----------------YETLIDLLGVVGRRSGLPMVVC 60
          MA+D+IE SS PSQSPS                      ETLIDLLGV GRR+ LP+VVC
Sbjct: 1  MALDAIEASSPPSQSPSNFCSSNQLRHFYVAVDRLHFKMETLIDLLGVAGRRTCLPIVVC 60

Query: 61 CSSRDELDAVCSTVSSLPYISLSSL 69
          CSSRDELDAVCS VS+LPY+SLSSL
Sbjct: 61 CSSRDELDAVCSAVSNLPYVSLSSL 85

[Close]

BLAST of Spo06718.1 vs. NCBI nr
Match: gi|590704719|ref|XP_007047237.1| (ATP-dependent RNA helicase eIF4A isoform 2 [Theobroma cacao])

HSP 1 Score: 91.7 bits (226), Expect = 5.500e-16
Identity = 52/85 (61.18%), Postives = 58/85 (68.24%), Query Frame = 1


		  
Query: 1  MAIDSIETSSSPSQSPSYTIG-----------------YETLIDLLGVVGRRSGLPMVVC 60
          MA+D+IE SS PSQSPS                      ETLIDLLGV GRR+ LP+VVC
Sbjct: 1  MALDAIEASSPPSQSPSNFCSSNQLRHFYVAVDRLHFKMETLIDLLGVAGRRTCLPIVVC 60

Query: 61 CSSRDELDAVCSTVSSLPYISLSSL 69
          CSSRDELDAVCS VS+LPY+SLSSL
Sbjct: 61 CSSRDELDAVCSAVSNLPYVSLSSL 85

[Close]

BLAST of Spo06718.1 vs. NCBI nr
Match: gi|590704723|ref|XP_007047238.1| (ATP-dependent RNA helicase eIF4A isoform 3 [Theobroma cacao])

HSP 1 Score: 91.7 bits (226), Expect = 5.500e-16
Identity = 52/85 (61.18%), Postives = 58/85 (68.24%), Query Frame = 1


		  
Query: 1  MAIDSIETSSSPSQSPSYTIG-----------------YETLIDLLGVVGRRSGLPMVVC 60
          MA+D+IE SS PSQSPS                      ETLIDLLGV GRR+ LP+VVC
Sbjct: 1  MALDAIEASSPPSQSPSNFCSSNQLRHFYVAVDRLHFKMETLIDLLGVAGRRTCLPIVVC 60

Query: 61 CSSRDELDAVCSTVSSLPYISLSSL 69
          CSSRDELDAVCS VS+LPY+SLSSL
Sbjct: 61 CSSRDELDAVCSAVSNLPYVSLSSL 85

[Close]

BLAST of Spo06718.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R6I9_SPIOL (Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_107510 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 1.300e-24
Identity = 67/83 (80.72%), Postives = 67/83 (80.72%), Query Frame = 1


		  
Query: 1   MAIDSIETSSSPSQSPSYTIGY---------------ETLIDLLGVVGRRSGLPMVVCCS 60
           MAIDSIETSSSPSQSPSYTIG                ETLIDLLGVVGRRSGLPMVVCCS
Sbjct: 28  MAIDSIETSSSPSQSPSYTIGQPRHFYLAVDRPPFKIETLIDLLGVVGRRSGLPMVVCCS 87

Query: 61  SRDELDAVCSTVSSLPYISLSSL 69
           SRDELDAVCSTVSSLPYISLSSL
Sbjct: 88  SRDELDAVCSTVSSLPYISLSSL 110

[Close]

BLAST of Spo06718.1 vs. UniProtKB/TrEMBL
Match: A0A0J8B7N1_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_003340 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 9.700e-20
Identity = 58/83 (69.88%), Postives = 61/83 (73.49%), Query Frame = 1


		  
Query: 1  MAIDSIETSSSPSQSPSYTIGY---------------ETLIDLLGVVGRRSGLPMVVCCS 60
          MA +  ET SSPSQSPSY +                 ETL+DLLGVVGRRSGLPMVVCCS
Sbjct: 1  MATEIGETPSSPSQSPSYPVSQLRHFYLAVDRPQFRVETLVDLLGVVGRRSGLPMVVCCS 60

Query: 61 SRDELDAVCSTVSSLPYISLSSL 69
          SRDELDAVCSTVSSLPYISLSSL
Sbjct: 61 SRDELDAVCSTVSSLPYISLSSL 83

[Close]

BLAST of Spo06718.1 vs. UniProtKB/TrEMBL
Match: A0A061DGD9_THECC (ATP-dependent RNA helicase eIF4A isoform 3 OS=Theobroma cacao GN=TCM_000603 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 3.800e-16
Identity = 52/85 (61.18%), Postives = 58/85 (68.24%), Query Frame = 1


		  
Query: 1  MAIDSIETSSSPSQSPSYTIG-----------------YETLIDLLGVVGRRSGLPMVVC 60
          MA+D+IE SS PSQSPS                      ETLIDLLGV GRR+ LP+VVC
Sbjct: 1  MALDAIEASSPPSQSPSNFCSSNQLRHFYVAVDRLHFKMETLIDLLGVAGRRTCLPIVVC 60

Query: 61 CSSRDELDAVCSTVSSLPYISLSSL 69
          CSSRDELDAVCS VS+LPY+SLSSL
Sbjct: 61 CSSRDELDAVCSAVSNLPYVSLSSL 85

[Close]

BLAST of Spo06718.1 vs. UniProtKB/TrEMBL
Match: A0A061DHV4_THECC (ATP-dependent RNA helicase eIF4A isoform 4 OS=Theobroma cacao GN=TCM_000603 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 3.800e-16
Identity = 52/85 (61.18%), Postives = 58/85 (68.24%), Query Frame = 1


		  
Query: 1  MAIDSIETSSSPSQSPSYTIG-----------------YETLIDLLGVVGRRSGLPMVVC 60
          MA+D+IE SS PSQSPS                      ETLIDLLGV GRR+ LP+VVC
Sbjct: 1  MALDAIEASSPPSQSPSNFCSSNQLRHFYVAVDRLHFKMETLIDLLGVAGRRTCLPIVVC 60

Query: 61 CSSRDELDAVCSTVSSLPYISLSSL 69
          CSSRDELDAVCS VS+LPY+SLSSL
Sbjct: 61 CSSRDELDAVCSAVSNLPYVSLSSL 85

[Close]

BLAST of Spo06718.1 vs. UniProtKB/TrEMBL
Match: A0A061DG91_THECC (ATP-dependent RNA helicase eIF4A isoform 2 OS=Theobroma cacao GN=TCM_000603 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 3.800e-16
Identity = 52/85 (61.18%), Postives = 58/85 (68.24%), Query Frame = 1


		  
Query: 1  MAIDSIETSSSPSQSPSYTIG-----------------YETLIDLLGVVGRRSGLPMVVC 60
          MA+D+IE SS PSQSPS                      ETLIDLLGV GRR+ LP+VVC
Sbjct: 1  MALDAIEASSPPSQSPSNFCSSNQLRHFYVAVDRLHFKMETLIDLLGVAGRRTCLPIVVC 60

Query: 61 CSSRDELDAVCSTVSSLPYISLSSL 69
          CSSRDELDAVCS VS+LPY+SLSSL
Sbjct: 61 CSSRDELDAVCSAVSNLPYVSLSSL 85

[Close]

BLAST of Spo06718.1 vs. TAIR (Arabidopsis)
Match: AT4G37020.2 (FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 79.3 bits (194), Expect = 9.900e-16
Identity = 43/80 (53.75%), Postives = 56/80 (70.00%), Query Frame = 1


		  
Query: 3  IDSIETSSSPSQSPSYT--------------IGYETLIDLLGVVGRRSGLPMVVCCSSRD 62
          +DS+E  S P QSPS +                 ET+++LLGV+GRR  LP+VVCCSSRD
Sbjct: 1  MDSMEAPSLPFQSPSRSSQQLHFYLAVDRPQFKMETVVELLGVLGRRPWLPIVVCCSSRD 60

Query: 63 ELDAVCSTVSSLPYISLSSL 69
          ELDAVCS++S+LPYISL++L
Sbjct: 61 ELDAVCSSLSTLPYISLAAL 80

The following BLAST results are available for this feature:

BLAST of Spo06718.1 vs. NCBI nr
BLAST of Spo06718.1 vs. UniProtKB/TrEMBL
BLAST of Spo06718.1 vs. ExPASy Swiss-Prot
BLAST of Spo06718.1 vs. TAIR (Arabidopsis)

BLAST of Spo06718.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902202941\|gb\|KNA14427.1\|	1.9e-24	80.7	hypothetical protein SOVF_1075...	[more]
gi\|731373347\|ref\|XP_010666624.1\|	1.4e-19	69.8	PREDICTED: uncharacterized pro...	[more]
gi\|590704716\|ref\|XP_007047236.1\|	5.5e-16	61.1	ATP-dependent RNA helicase eIF...	[more]
gi\|590704719\|ref\|XP_007047237.1\|	5.5e-16	61.1	ATP-dependent RNA helicase eIF...	[more]
gi\|590704723\|ref\|XP_007047238.1\|	5.5e-16	61.1	ATP-dependent RNA helicase eIF...	[more]

BLAST of Spo06718.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9R6I9_SPIOL	1.3e-24	80.7	Uncharacterized protein (Fragm...	[more]
A0A0J8B7N1_BETVU	9.7e-20	69.8	Uncharacterized protein OS=Bet...	[more]
A0A061DGD9_THECC	3.8e-16	61.1	ATP-dependent RNA helicase eIF...	[more]
A0A061DHV4_THECC	3.8e-16	61.1	ATP-dependent RNA helicase eIF...	[more]
A0A061DG91_THECC	3.8e-16	61.1	ATP-dependent RNA helicase eIF...	[more]

BLAST of Spo06718.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Spo06718.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1


Match Name	E-value	Identity	Description
AT4G37020.2	9.9e-16	53.7	FUNCTIONS IN: molecular_functi...	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008152	metabolic process
molecular_function	GO:0004386	helicase activity