Spo06739.1 (mRNA)

Overview
NameSpo06739.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
Locationchr4 : 77302677 .. 77303720 (-)
Sequence length870
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AACTGGATCATATTAATTACTATAAATTGATAATCAACTACGGAGTACGATAATTATAAAAATTATATTATACAAATTTGCGCAAATGGCTAGAGCTACCACATCAACCTCCTTCATCATAACAATTGTGTTAGTAGTATTACTGAATACTTCAGGTAAACGTGTACCTCTTGGTCTATTTAATTTATTGCTTAGAGATATATTCGATCTGAATTATTGATTGTTAGTAATACTAGTTTTTACCCAATGCACAAATTGGTTATACTAGCTACTTTGCATGAAATTGTGTTACATTACACTTACATATTGCATATATTGTTATTACACAGCTCCGGCAGTTGCCGTTGTTAATGAACCATGTAGGGGGCCCAATGAAGTTTGTGGAGGCTTCGTCGGATTTGAATGTTGTGCAGGATTAGATTGCAGACTCGAGGGTGACTTCAGTGAATCGGATAGAAGTGGAGTTTGTGTGCCACCAGATCAATCATGTCCAACGGCCGGCCAACTTTGTGGTATCACTGGCACTGGTGTGCTTTGCTGTAGAGGACTTGAATGTGTGCCTGATGTTGATTTTCCGACTTTACCCGGAATATGTCGTACTACGGGAAATCGTTTCATAAAACTAACTTATTAGTTAATTAAGAATCAAATTTCAATATCAATGTATCTGGATGTAAGTTAATGATGTACTTTATGAAATAAATTTAATCAATAATGGATCATGGACTGTTTTTTTCGGAATGACAATGGCGGCAATAAAAATTATAAATGGGGAATGGCTTCGAGTTGAACATGTGACATTACGCAACCATTAGTCTTTCCAAGTAGGTAAAAATCTCATTGTACTTTGTTTTTCTTTATGTAACGTACTAACATCTCTCTGTTATTTATTCCTTACGACTTCTTATGTCTTCCCTTTAATTGTTCGTTATCATTGTTGCGCACAAGTTAGAATGGCGAATGTTGTGTAACCAATTAAATATAGTACTCCCGTAATACGGATTATTTGTCAAATACGAAAATTAAAATTTTTGTAAAATTTTT

mRNA sequence

AACTGGATCATATTAATTACTATAAATTGATAATCAACTACGGAGTACGATAATTATAAAAATTATATTATACAAATTTGCGCAAATGGCTAGAGCTACCACATCAACCTCCTTCATCATAACAATTGTGTTAGTAGTATTACTGAATACTTCAGCTCCGGCAGTTGCCGTTGTTAATGAACCATGTAGGGGGCCCAATGAAGTTTGTGGAGGCTTCGTCGGATTTGAATGTTGTGCAGGATTAGATTGCAGACTCGAGGGTGACTTCAGTGAATCGGATAGAAGTGGAGTTTGTGTGCCACCAGATCAATCATGTCCAACGGCCGGCCAACTTTGTGGTATCACTGGCACTGGTGTGCTTTGCTGTAGAGGACTTGAATGTGTGCCTGATGTTGATTTTCCGACTTTACCCGGAATATGTCGTACTACGGGAAATCGTTTCATAAAACTAACTTATTAGTTAATTAAGAATCAAATTTCAATATCAATGTATCTGGATGTAAGTTAATGATGTACTTTATGAAATAAATTTAATCAATAATGGATCATGGACTGTTTTTTTCGGAATGACAATGGCGGCAATAAAAATTATAAATGGGGAATGGCTTCGAGTTGAACATGTGACATTACGCAACCATTAGTCTTTCCAAGTAGGTAAAAATCTCATTGTACTTTGTTTTTCTTTATGTAACGTACTAACATCTCTCTGTTATTTATTCCTTACGACTTCTTATGTCTTCCCTTTAATTGTTCGTTATCATTGTTGCGCACAAGTTAGAATGGCGAATGTTGTGTAACCAATTAAATATAGTACTCCCGTAATACGGATTATTTGTCAAATACGAAAATTAAAATTTTTGTAAAATTTTT

Coding sequence (CDS)

ATGGCTAGAGCTACCACATCAACCTCCTTCATCATAACAATTGTGTTAGTAGTATTACTGAATACTTCAGCTCCGGCAGTTGCCGTTGTTAATGAACCATGTAGGGGGCCCAATGAAGTTTGTGGAGGCTTCGTCGGATTTGAATGTTGTGCAGGATTAGATTGCAGACTCGAGGGTGACTTCAGTGAATCGGATAGAAGTGGAGTTTGTGTGCCACCAGATCAATCATGTCCAACGGCCGGCCAACTTTGTGGTATCACTGGCACTGGTGTGCTTTGCTGTAGAGGACTTGAATGTGTGCCTGATGTTGATTTTCCGACTTTACCCGGAATATGTCGTACTACGGGAAATCGTTTCATAAAACTAACTTATTAG

Protein sequence

MARATTSTSFIITIVLVVLLNTSAPAVAVVNEPCRGPNEVCGGFVGFECCAGLDCRLEGDFSESDRSGVCVPPDQSCPTAGQLCGITGTGVLCCRGLECVPDVDFPTLPGICRTTGNRFIKLTY
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo06739Spo06739gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo06739.1Spo06739.1-proteinpolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo06739.1.utr5p.1Spo06739.1.utr5p.1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo06739.1.CDS.2Spo06739.1.CDS.2CDS
Spo06739.1.CDS.1Spo06739.1.CDS.1CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo06739.1.utr3p.1Spo06739.1.utr3p.1three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo06739.1.exon.2Spo06739.1.exon.2exon
Spo06739.1.exon.1Spo06739.1.exon.1exon


Homology
[Close]
BLAST of Spo06739.1 vs. NCBI nr
Match: gi|902106808|gb|KNA03648.1| (hypothetical protein SOVF_207100 [Spinacia oleracea])

HSP 1 Score: 261.5 bits (667), Expect = 7.300e-67
Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 1 

		  

Query: 1   MARATTSTSFIITIVLVVLLNTSAPAVAVVNEPCRGPNEVCGGFVGFECCAGLDCRLEGD 60
           MARATTSTSFIITIVLVVLLNTSAPAVAVVNEPCRGPNEVCGGFVGFECCAGLDCRLEGD
Sbjct: 1   MARATTSTSFIITIVLVVLLNTSAPAVAVVNEPCRGPNEVCGGFVGFECCAGLDCRLEGD 60

Query: 61  FSESDRSGVCVPPDQSCPTAGQLCGITGTGVLCCRGLECVPDVDFPTLPGICRTTGNRFI 120
           FSESDRSGVCVPPDQSCPTAGQLCGITGTGVLCCRGLECVPDVDFPTLPGICRTTGNRFI
Sbjct: 61  FSESDRSGVCVPPDQSCPTAGQLCGITGTGVLCCRGLECVPDVDFPTLPGICRTTGNRFI 120

Query: 121 KLTY 125
           KLTY
Sbjct: 121 KLTY 124
[Close]
BLAST of Spo06739.1 vs. NCBI nr
Match: gi|902229503|gb|KNA21527.1| (hypothetical protein SOVF_042360 [Spinacia oleracea])

HSP 1 Score: 121.3 bits (303), Expect = 1.200e-24
Identity = 67/124 (54.03%), Postives = 83/124 (66.94%), Query Frame = 1 

		  

Query: 1   MARATTSTSFIITIVLVVLLNTSAPAVAVVNEPCRGPNEVCGGFVGFECCAGLDCRLEGD 60
           MARATTST FI+TI+LVV LN+SAPAVAV +E C+   E CGG VGF+CC GL+C L+GD
Sbjct: 1   MARATTSTFFILTIMLVVFLNSSAPAVAV-DETCKMTGEFCGGIVGFQCCDGLECILDGD 60

Query: 61  FSESDRSGVCVPPDQSCPTAGQLCGITGTGVLCCRGLECVPDVDFPTLPGICRTTGNRFI 120
           +  +D  G C P   +CP AG+ CG    G+ CC+GL CV + DFP   G C T G  + 
Sbjct: 61  Y--ADAGGECKP---TCPVAGEFCGGI-AGIQCCKGLTCVLEGDFPDAGGKC-TKGTHYK 116

Query: 121 KLTY 125
           K  Y
Sbjct: 121 KSRY 116
[Close]
BLAST of Spo06739.1 vs. NCBI nr
Match: gi|731364798|ref|XP_010694173.1| (PREDICTED: uncharacterized protein LOC104907023 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 101.3 bits (251), Expect = 1.300e-18
Identity = 56/115 (48.70%), Postives = 68/115 (59.13%), Query Frame = 1 

		  

Query: 1   MARATTSTSFIITIVLVVLLNTSAPAVAVVNEPCRGPNEVCGGFVGFECCAGLDCRLEGD 60
           MAR   ST  ++  VL V LN SAPA+AV ++ C+   E CGG VGF+CC GLDC LEGD
Sbjct: 1   MARTILSTFIMMAFVLAVFLNNSAPAIAV-DDTCKTGGEFCGGIVGFQCCEGLDCILEGD 60

Query: 61  FSESDRSGVCVPPDQSCPTAGQLCGITGTGVLCCRGLECVPDVDFPTLPGICRTT 116
           F   D  G C  P  +CPT GQ CG    G+ CC+GL CV + +     G C  T
Sbjct: 61  F--PDAGGEC-KPTSTCPTVGQFCGGI-IGIQCCKGLACVLEDESADAGGTCTYT 110
[Close]
BLAST of Spo06739.1 vs. NCBI nr
Match: gi|731364809|ref|XP_010694179.1| (PREDICTED: uncharacterized protein LOC104907028 isoform X1 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 89.0 bits (219), Expect = 6.500e-15
Identity = 54/112 (48.21%), Postives = 62/112 (55.36%), Query Frame = 1 

		  

Query: 4   ATTSTSFIITIVLVVLLNTSAPAVAVVNEPCRGPNEVCGGFVGFECCAGLDCRLEGDFSE 63
           A  S   IITI+L   LN SA   A     C+  NE CGG  GF+CC GL C LEGDF  
Sbjct: 2   ARVSIILIITIILAAFLNISA---ADKTRTCKKANEFCGGIAGFQCCEGLHCNLEGDF-- 61

Query: 64  SDRSGVCVPPDQSCPTAGQLC-GITGTGVLCCRGLECV-PDVDFPTLPGICR 114
           +D  G C    QSC  AGQ+C G T     CC+GLECV  DV+ P   G C+
Sbjct: 62  ADAGGHC-KKKQSCQKAGQICGGFTAVERRCCKGLECVMDDVNIPDAGGKCQ 107
[Close]
BLAST of Spo06739.1 vs. NCBI nr
Match: gi|731364811|ref|XP_010694180.1| (PREDICTED: uncharacterized protein LOC104907028 isoform X2 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 87.4 bits (215), Expect = 1.900e-14
Identity = 53/112 (47.32%), Postives = 61/112 (54.46%), Query Frame = 1 

		  

Query: 4   ATTSTSFIITIVLVVLLNTSAPAVAVVNEPCRGPNEVCGGFVGFECCAGLDCRLEGDFSE 63
           A  S   IITI+L   LN SA         C+  NE CGG  GF+CC GL C LEGDF  
Sbjct: 2   ARVSIILIITIILAAFLNISADKTRT----CKKANEFCGGIAGFQCCEGLHCNLEGDF-- 61

Query: 64  SDRSGVCVPPDQSCPTAGQLC-GITGTGVLCCRGLECV-PDVDFPTLPGICR 114
           +D  G C    QSC  AGQ+C G T     CC+GLECV  DV+ P   G C+
Sbjct: 62  ADAGGHC-KKKQSCQKAGQICGGFTAVERRCCKGLECVMDDVNIPDAGGKCQ 106
[Close]
BLAST of Spo06739.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QAE2_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_207100 PE=4 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 5.100e-67
Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 1 

		  

Query: 1   MARATTSTSFIITIVLVVLLNTSAPAVAVVNEPCRGPNEVCGGFVGFECCAGLDCRLEGD 60
           MARATTSTSFIITIVLVVLLNTSAPAVAVVNEPCRGPNEVCGGFVGFECCAGLDCRLEGD
Sbjct: 1   MARATTSTSFIITIVLVVLLNTSAPAVAVVNEPCRGPNEVCGGFVGFECCAGLDCRLEGD 60

Query: 61  FSESDRSGVCVPPDQSCPTAGQLCGITGTGVLCCRGLECVPDVDFPTLPGICRTTGNRFI 120
           FSESDRSGVCVPPDQSCPTAGQLCGITGTGVLCCRGLECVPDVDFPTLPGICRTTGNRFI
Sbjct: 61  FSESDRSGVCVPPDQSCPTAGQLCGITGTGVLCCRGLECVPDVDFPTLPGICRTTGNRFI 120

Query: 121 KLTY 125
           KLTY
Sbjct: 121 KLTY 124
[Close]
BLAST of Spo06739.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RRT0_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_042360 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 8.200e-25
Identity = 67/124 (54.03%), Postives = 83/124 (66.94%), Query Frame = 1 

		  

Query: 1   MARATTSTSFIITIVLVVLLNTSAPAVAVVNEPCRGPNEVCGGFVGFECCAGLDCRLEGD 60
           MARATTST FI+TI+LVV LN+SAPAVAV +E C+   E CGG VGF+CC GL+C L+GD
Sbjct: 1   MARATTSTFFILTIMLVVFLNSSAPAVAV-DETCKMTGEFCGGIVGFQCCDGLECILDGD 60

Query: 61  FSESDRSGVCVPPDQSCPTAGQLCGITGTGVLCCRGLECVPDVDFPTLPGICRTTGNRFI 120
           +  +D  G C P   +CP AG+ CG    G+ CC+GL CV + DFP   G C T G  + 
Sbjct: 61  Y--ADAGGECKP---TCPVAGEFCGGI-AGIQCCKGLTCVLEGDFPDAGGKC-TKGTHYK 116

Query: 121 KLTY 125
           K  Y
Sbjct: 121 KSRY 116
[Close]
BLAST of Spo06739.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BEN9_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g091350 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 8.800e-19
Identity = 56/115 (48.70%), Postives = 68/115 (59.13%), Query Frame = 1 

		  

Query: 1   MARATTSTSFIITIVLVVLLNTSAPAVAVVNEPCRGPNEVCGGFVGFECCAGLDCRLEGD 60
           MAR   ST  ++  VL V LN SAPA+AV ++ C+   E CGG VGF+CC GLDC LEGD
Sbjct: 1   MARTILSTFIMMAFVLAVFLNNSAPAIAV-DDTCKTGGEFCGGIVGFQCCEGLDCILEGD 60

Query: 61  FSESDRSGVCVPPDQSCPTAGQLCGITGTGVLCCRGLECVPDVDFPTLPGICRTT 116
           F   D  G C  P  +CPT GQ CG    G+ CC+GL CV + +     G C  T
Sbjct: 61  F--PDAGGEC-KPTSTCPTVGQFCGGI-IGIQCCKGLACVLEDESADAGGTCTYT 110
[Close]
BLAST of Spo06739.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BEF0_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g091400 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 4.500e-15
Identity = 54/112 (48.21%), Postives = 62/112 (55.36%), Query Frame = 1 

		  

Query: 4   ATTSTSFIITIVLVVLLNTSAPAVAVVNEPCRGPNEVCGGFVGFECCAGLDCRLEGDFSE 63
           A  S   IITI+L   LN SA   A     C+  NE CGG  GF+CC GL C LEGDF  
Sbjct: 2   ARVSIILIITIILAAFLNISA---ADKTRTCKKANEFCGGIAGFQCCEGLHCNLEGDF-- 61

Query: 64  SDRSGVCVPPDQSCPTAGQLC-GITGTGVLCCRGLECV-PDVDFPTLPGICR 114
           +D  G C    QSC  AGQ+C G T     CC+GLECV  DV+ P   G C+
Sbjct: 62  ADAGGHC-KKKQSCQKAGQICGGFTAVERRCCKGLECVMDDVNIPDAGGKCQ 107
[Close]
BLAST of Spo06739.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BEP3_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g091400 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.300e-14
Identity = 53/112 (47.32%), Postives = 61/112 (54.46%), Query Frame = 1 

		  

Query: 4   ATTSTSFIITIVLVVLLNTSAPAVAVVNEPCRGPNEVCGGFVGFECCAGLDCRLEGDFSE 63
           A  S   IITI+L   LN SA         C+  NE CGG  GF+CC GL C LEGDF  
Sbjct: 2   ARVSIILIITIILAAFLNISADKTRT----CKKANEFCGGIAGFQCCEGLHCNLEGDF-- 61

Query: 64  SDRSGVCVPPDQSCPTAGQLC-GITGTGVLCCRGLECV-PDVDFPTLPGICR 114
           +D  G C    QSC  AGQ+C G T     CC+GLECV  DV+ P   G C+
Sbjct: 62  ADAGGHC-KKKQSCQKAGQICGGFTAVERRCCKGLECVMDDVNIPDAGGKCQ 106
The following BLAST results are available for this feature:
BLAST of Spo06739.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902106808|gb|KNA03648.1|7.3e-67100.hypothetical protein SOVF_2071... [more]
gi|902229503|gb|KNA21527.1|1.2e-2454.0hypothetical protein SOVF_0423... [more]
gi|731364798|ref|XP_010694173.1|1.3e-1848.7PREDICTED: uncharacterized pro... [more]
gi|731364809|ref|XP_010694179.1|6.5e-1548.2PREDICTED: uncharacterized pro... [more]
gi|731364811|ref|XP_010694180.1|1.9e-1447.3PREDICTED: uncharacterized pro... [more]
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BLAST of Spo06739.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9QAE2_SPIOL5.1e-67100.Uncharacterized protein OS=Spi... [more]
A0A0K9RRT0_SPIOL8.2e-2554.0Uncharacterized protein OS=Spi... [more]
A0A0J8BEN9_BETVU8.8e-1948.7Uncharacterized protein OS=Bet... [more]
A0A0J8BEF0_BETVU4.5e-1548.2Uncharacterized protein OS=Bet... [more]
A0A0J8BEP3_BETVU1.3e-1447.3Uncharacterized protein OS=Bet... [more]
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BLAST of Spo06739.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo06739.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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