Spo06757.1 (mRNA)

Overview
NameSpo06757.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionATP synthase subunit beta, chloroplastic (3.6.3.14) (ATP synthase F1 sector subunit beta) (F-ATPase subunit beta)
LocationSpoScf_01459 : 78836 .. 81898 (-)
Sequence length396
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAATCAATCCTACTACTTCTGATCCTGGGGTTTCCACACTTGAAAAAAAAAACCTGGGGCGTATCGCTCAAATTATTGGTCCGGTACTGGACGTAGCCTTTCCTCCAGGCAAGATGCCCAATATTTACAACGCTCTAATAGTTAAAGGTCGAGATACTGCTGGTCAACCAATGAATGTGACTTGTGAAGTACAACAATTATTAGGAAATAATAGAGTTAGAGCTGTAGCTATGAGTGCTACAGATGGTCTAACGCGAGGAATGGAAGTTATCGACACAGGAGCTCCTTTAAGCGTTCCAGTCGGTGGAGCGACTCTTGGACGAATTTTTAACGTTCTTGGGGAGCCTGTTGATAATTTAGGTCCAGTAGATACACGCACAACATCTCCTATTCATAGATCGGCGCCCGGGACGTACTGTGGACTATCTACGGAGGGACGACATTTGGAGTCCTAAAGACTTGTTCTTGTTCGGTTCGGGCGCAGCTAGGGAAGGCACGCTACAACATGTATGCATCCATTCTATGCTAAATGATTATGTGTAAATAATATGCTTTCCTGGCTTTATGGTTTTTCCGCATGATTTATGAATTGTCATATGTATCATAACCTAACAGGGTCTGCGTCACTAACCACGCAGGTCCTCAGTTTTCGAAAATGACAAGAAAATAAAAATCTTCAAAAACAAAAACAGGCTCGCCATCTTCAGCCGGCGGGATCTACGTCACAAACCGCGTAGGTCCTTATTTTCAAAACATCAAAACAGATTTGTCCACTTCTATCGGACGGGGTGTCCACCCTCAGCGGACAGGCTCGCCCACCTTCAGCGGGCGGGGTCTGCGTCACTAACAGCGCAGGTCCTTAGTCGCTGCAGCGATAACTTTTTCTGGTTTCCCTTTTCCAAAAATCAAAGGATGGTTCCCCTTTTCCAAAAATCAAAGGATGGTTTCCCTTTTCCAAAAATCAAAGGATGGTTTCCCTTTTCCAAAAATCAAAGGATGGTTTCCCTTTTCCAAAAATCAAAGGATTGGTTTTCCGCTTTTCCAAAAAAGAGCGATGTGCTGGATTTTCCTTCGTTTTACGTCCTATAAAAACAAGGGGGTTTTCTCGTTTAGCTAACCCTGAAAATGAGAATCTTTAAAACGTTTTACCTCGTGATTGGGCTTGGCCAGGCCTAGTTACACTTTATAGCTTCGATTTCAAAAATATCTTTAGACACTTCCAATGACAAAGTGAGGGAGTTTCTATACTATCGGTTAACAAATTCCAATGACGCGTGAGGAATGTGTTAACACTTCAAGTGATGACCCTTAAGTCAAATGTTATCACTCGGGGGCTCGTGAGACCCTCGCAAAACAGGTCACATACACCATGGCTTGTATGACGCACTCCGTCTAGTACTTTGACCATCGTCTCATCTCGAGACTCAGTCAAAGTGGGGGCTAACTGTAGACACCTACTTTTGTCCCCATTCCCGAAAGGGAAGGTTCAATGATGAGAACATAAATCTCCACTTGGCAACGCATCTCCTATAAAATAACGAATCTCAATCACCCTTTCATTTCAGCCAAAACTGCTATTTATAGAAACCTGCTAAGAATAGTAACCGCCGTAAAAGGTAGTTGTTAAAAGTGGCAAAGTCATAAAAGATAGAAACCTGTCATAATTAGGTGTTTCACTCCAACATAAATCCTAAAAGAGATAGAACTGGCATTCCTGGTATAATTCGATAAAAGAGTTACGTATTAATTAAATTCCTAACGAATCTAGAGTTCGTAACGGGCCAGACGCATTCCGTCATAAGTTAATACGCACTAAAAGACTCAGATAAATCTCAAAAGCTCTGTGTTCTAAGAGTCCAAATCTGACAAAGAACTCGGCCCAGATCCCATTTTCAACGCCTGGATCTGGGCGCCGAAATCTTCGGCGCCCAGCCCTGGGCGCTGAAAATGCCTGGGGTCGTTTTATTTCCGGATTCTTTTTGGATTAGTATCTTAAAATCTATCTTTCCACACACTCTTTTCCTATAAATACATCCTAAAACCGACGTGAAAAGAACACACAATTCCATAACCTGAGTATTGACTCTAGCCTTAAGCCTAAGCCTCACGCTGCGAAATTGATCCGGCGTTCTGTCGCAATCGACCCAAAAGTCAAACAGAACGCATCCTGCCCCTTGTAGCTTGATGAATTAAGCCTAAATACTGGAACATTGCTTAGAAACCCGAGATTCGTTAAATAAAAGGAGAAATAGCAAAGTGGTTAGTTTTCTGAGAACCACAACGCACCTCTCAAGGGTGCGTTGTAATGTGTCCCTCGTATGATTTAATCGCTTTCATCACCCTTTTATAAAATTGTCAAACTATTAATTTGATTGATCTATCACGCCTAATAAGATAATACCTTGGACAATTGAATTATCATGCTAGGTACCTTAAATCAAATTAAATAAGATAATCACGATCGATTTAGTATTACGTGTTGCATATTGCTAAAATCAATTCAGAATAGTTTAATAATTTAACGCATGTCCCTTCAATTATTTATGCTGAGCTAGTAAGGATAACCTTCCTCTGGAGTATTATTGATGAGCACTCCTCTCGGTAGCTACAGTCCCCCGAACTCTCAATCTCTGCCCTGCGTGTGTACGTTGAGTGATCCCCACACCAGGGATCACAAGGGAACCTATGGTCGTCGTGGTCGAACATAATTGCACTCCCTTTATGTCACGATAACCGGGTTTTGTCAGTTTTCCTCATTGTCGTTAAAAACTGAATGGCGACTCCTATATTACTAGTCGATTGGGTGTCAACTCACAAGAAATCCAATTACACTTGATCTGACGACGTCACGCCCACGAGGGACGAGGTCATGCATTAGCCTCGTGCTTTTTCGACCCCCTCACAGAAGTATAGAATGATCAAGTGTTGTTGTTTTTGCAATAATTCTGCCGGAATTCTATTAAATAGAGAGAATTTGAGCGGTTTTTCGTCCGTTGTAGGGAGTGAGTGGGAGGTTGAGGAGAGAGAAAATGGGAGAGAGTGGGAGTTATGGTAACTGA

mRNA sequence

ATGAGAATCAATCCTACTACTTCTGATCCTGGGGTTTCCACACTTGAAAAAAAAAACCTGGGGCGTATCGCTCAAATTATTGGTCCGGTACTGGACGTAGCCTTTCCTCCAGGCAAGATGCCCAATATTTACAACGCTCTAATAGTTAAAGGTCGAGATACTGCTGGTCAACCAATGAATGTGACTTGTGAAGTACAACAATTATTAGGAAATAATAGAGTTAGAGCTGTAGCTATGAGTGCTACAGATGGTCTAACGCGAGGAATGGAAGTTATCGACACAGGAGCTCCTTTAAGCGTTCCAGTCGGTGGAGCGACTCTTGGACGAATTTTTAACGGAGTGAGTGGGAGGTTGAGGAGAGAGAAAATGGGAGAGAGTGGGAGTTATGGTAACTGA

Coding sequence (CDS)

ATGAGAATCAATCCTACTACTTCTGATCCTGGGGTTTCCACACTTGAAAAAAAAAACCTGGGGCGTATCGCTCAAATTATTGGTCCGGTACTGGACGTAGCCTTTCCTCCAGGCAAGATGCCCAATATTTACAACGCTCTAATAGTTAAAGGTCGAGATACTGCTGGTCAACCAATGAATGTGACTTGTGAAGTACAACAATTATTAGGAAATAATAGAGTTAGAGCTGTAGCTATGAGTGCTACAGATGGTCTAACGCGAGGAATGGAAGTTATCGACACAGGAGCTCCTTTAAGCGTTCCAGTCGGTGGAGCGACTCTTGGACGAATTTTTAACGGAGTGAGTGGGAGGTTGAGGAGAGAGAAAATGGGAGAGAGTGGGAGTTATGGTAACTGA

Protein sequence

MRINPTTSDPGVSTLEKKNLGRIAQIIGPVLDVAFPPGKMPNIYNALIVKGRDTAGQPMNVTCEVQQLLGNNRVRAVAMSATDGLTRGMEVIDTGAPLSVPVGGATLGRIFNGVSGRLRREKMGESGSYGN
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo06757Spo06757gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo06757.1Spo06757.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo06757.1.CDS.2Spo06757.1.CDS.2CDS
Spo06757.1.CDS.1Spo06757.1.CDS.1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo06757.1.exon.2Spo06757.1.exon.2exon
Spo06757.1.exon.1Spo06757.1.exon.1exon


Homology
[Close]
BLAST of Spo06757.1 vs. NCBI nr
Match: gi|11497535|ref|NP_054943.1| (ATP synthase CF1 beta subunit [Spinacia oleracea])

HSP 1 Score: 225.3 bits (573), Expect = 6.100e-56
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 1 

		  

Query: 1   MRINPTTSDPGVSTLEKKNLGRIAQIIGPVLDVAFPPGKMPNIYNALIVKGRDTAGQPMN 60
           MRINPTTSDPGVSTLEKKNLGRIAQIIGPVLDVAFPPGKMPNIYNALIVKGRDTAGQPMN
Sbjct: 1   MRINPTTSDPGVSTLEKKNLGRIAQIIGPVLDVAFPPGKMPNIYNALIVKGRDTAGQPMN 60

Query: 61  VTCEVQQLLGNNRVRAVAMSATDGLTRGMEVIDTGAPLSVPVGGATLGRIFN 113
           VTCEVQQLLGNNRVRAVAMSATDGLTRGMEVIDTGAPLSVPVGGATLGRIFN
Sbjct: 61  VTCEVQQLLGNNRVRAVAMSATDGLTRGMEVIDTGAPLSVPVGGATLGRIFN 112
[Close]
BLAST of Spo06757.1 vs. NCBI nr
Match: gi|15988217|pdb|1FX0|B (Chain B, Crystal Structure Of The Chloroplast F1-Atpase From Spinach)

HSP 1 Score: 221.5 bits (563), Expect = 8.800e-55
Identity = 110/112 (98.21%), Postives = 111/112 (99.11%), Query Frame = 1 

		  

Query: 1   MRINPTTSDPGVSTLEKKNLGRIAQIIGPVLDVAFPPGKMPNIYNALIVKGRDTAGQPMN 60
           MRINPTTSDPGVSTLEKKNLGRIAQIIGPVL+VAFPPGKMPNIYNALIVKGRDTAGQPMN
Sbjct: 1   MRINPTTSDPGVSTLEKKNLGRIAQIIGPVLNVAFPPGKMPNIYNALIVKGRDTAGQPMN 60

Query: 61  VTCEVQQLLGNNRVRAVAMSATDGLTRGMEVIDTGAPLSVPVGGATLGRIFN 113
           VTCEVQQLLGNNRVRAVAMSATDGLTRGMEVIDTGAPLSVPVGG TLGRIFN
Sbjct: 61  VTCEVQQLLGNNRVRAVAMSATDGLTRGMEVIDTGAPLSVPVGGPTLGRIFN 112
[Close]
BLAST of Spo06757.1 vs. NCBI nr
Match: gi|377580686|gb|AFB70481.1| (ATPase beta chain, partial (chloroplast) [Portulacaria afra])

HSP 1 Score: 220.7 bits (561), Expect = 1.500e-54
Identity = 109/112 (97.32%), Postives = 111/112 (99.11%), Query Frame = 1 

		  

Query: 1   MRINPTTSDPGVSTLEKKNLGRIAQIIGPVLDVAFPPGKMPNIYNALIVKGRDTAGQPMN 60
           MRINPTTS PGVSTLEKKNLGRIAQIIGPVLDVAFPPGKMPNIYNAL+VKGRDTAGQP+N
Sbjct: 1   MRINPTTSGPGVSTLEKKNLGRIAQIIGPVLDVAFPPGKMPNIYNALVVKGRDTAGQPIN 60

Query: 61  VTCEVQQLLGNNRVRAVAMSATDGLTRGMEVIDTGAPLSVPVGGATLGRIFN 113
           VTCEVQQLLGNNRVRAVAMSATDGLTRGMEVIDTGAPLSVPVGGATLGRIFN
Sbjct: 61  VTCEVQQLLGNNRVRAVAMSATDGLTRGMEVIDTGAPLSVPVGGATLGRIFN 112
[Close]
BLAST of Spo06757.1 vs. NCBI nr
Match: gi|306485981|gb|ADM92639.1| (ATP synthase CF1 beta subunit [Davidia involucrata])

HSP 1 Score: 220.3 bits (560), Expect = 2.000e-54
Identity = 108/112 (96.43%), Postives = 111/112 (99.11%), Query Frame = 1 

		  

Query: 1   MRINPTTSDPGVSTLEKKNLGRIAQIIGPVLDVAFPPGKMPNIYNALIVKGRDTAGQPMN 60
           MRINPTTS PG+STLEKKNLGRIAQIIGPVLDVAFPPGKMPNIYNAL+VKGRDTAGQP+N
Sbjct: 1   MRINPTTSGPGISTLEKKNLGRIAQIIGPVLDVAFPPGKMPNIYNALVVKGRDTAGQPIN 60

Query: 61  VTCEVQQLLGNNRVRAVAMSATDGLTRGMEVIDTGAPLSVPVGGATLGRIFN 113
           VTCEVQQLLGNNRVRAVAMSATDGLTRGMEVIDTGAPLSVPVGGATLGRIFN
Sbjct: 61  VTCEVQQLLGNNRVRAVAMSATDGLTRGMEVIDTGAPLSVPVGGATLGRIFN 112
[Close]
BLAST of Spo06757.1 vs. NCBI nr
Match: gi|836642810|ref|YP_009143814.1| (ATP synthase CF1 beta subunit (chloroplast) [Salicornia bigelovii])

HSP 1 Score: 219.5 bits (558), Expect = 3.300e-54
Identity = 108/112 (96.43%), Postives = 111/112 (99.11%), Query Frame = 1 

		  

Query: 1   MRINPTTSDPGVSTLEKKNLGRIAQIIGPVLDVAFPPGKMPNIYNALIVKGRDTAGQPMN 60
           MRINPTTS PGVSTLEKKNLGRIAQIIGPVLDVAFPPGKMPNIYNAL+VKGRDT+GQP+N
Sbjct: 1   MRINPTTSGPGVSTLEKKNLGRIAQIIGPVLDVAFPPGKMPNIYNALVVKGRDTSGQPIN 60

Query: 61  VTCEVQQLLGNNRVRAVAMSATDGLTRGMEVIDTGAPLSVPVGGATLGRIFN 113
           VTCEVQQLLGNNRVRAVAMSATDGLTRGMEVIDTGAPLSVPVGGATLGRIFN
Sbjct: 61  VTCEVQQLLGNNRVRAVAMSATDGLTRGMEVIDTGAPLSVPVGGATLGRIFN 112
[Close]
BLAST of Spo06757.1 vs. UniProtKB/TrEMBL
Match: H6T8A7_PORAR (ATP synthase subunit beta (Fragment) OS=Portulacaria afra GN=atpB PE=3 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 1.000e-54
Identity = 109/112 (97.32%), Postives = 111/112 (99.11%), Query Frame = 1 

		  

Query: 1   MRINPTTSDPGVSTLEKKNLGRIAQIIGPVLDVAFPPGKMPNIYNALIVKGRDTAGQPMN 60
           MRINPTTS PGVSTLEKKNLGRIAQIIGPVLDVAFPPGKMPNIYNAL+VKGRDTAGQP+N
Sbjct: 1   MRINPTTSGPGVSTLEKKNLGRIAQIIGPVLDVAFPPGKMPNIYNALVVKGRDTAGQPIN 60

Query: 61  VTCEVQQLLGNNRVRAVAMSATDGLTRGMEVIDTGAPLSVPVGGATLGRIFN 113
           VTCEVQQLLGNNRVRAVAMSATDGLTRGMEVIDTGAPLSVPVGGATLGRIFN
Sbjct: 61  VTCEVQQLLGNNRVRAVAMSATDGLTRGMEVIDTGAPLSVPVGGATLGRIFN 112
[Close]
BLAST of Spo06757.1 vs. UniProtKB/TrEMBL
Match: F4YK16_DAVIN (ATP synthase subunit beta (Fragment) OS=Davidia involucrata GN=atpB PE=3 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 1.400e-54
Identity = 108/112 (96.43%), Postives = 111/112 (99.11%), Query Frame = 1 

		  

Query: 1   MRINPTTSDPGVSTLEKKNLGRIAQIIGPVLDVAFPPGKMPNIYNALIVKGRDTAGQPMN 60
           MRINPTTS PG+STLEKKNLGRIAQIIGPVLDVAFPPGKMPNIYNAL+VKGRDTAGQP+N
Sbjct: 1   MRINPTTSGPGISTLEKKNLGRIAQIIGPVLDVAFPPGKMPNIYNALVVKGRDTAGQPIN 60

Query: 61  VTCEVQQLLGNNRVRAVAMSATDGLTRGMEVIDTGAPLSVPVGGATLGRIFN 113
           VTCEVQQLLGNNRVRAVAMSATDGLTRGMEVIDTGAPLSVPVGGATLGRIFN
Sbjct: 61  VTCEVQQLLGNNRVRAVAMSATDGLTRGMEVIDTGAPLSVPVGGATLGRIFN 112
[Close]
BLAST of Spo06757.1 vs. UniProtKB/TrEMBL
Match: A0A0G2QXY4_SALBI (ATP synthase subunit beta, chloroplastic OS=Salicornia bigelovii GN=atpB PE=3 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 2.300e-54
Identity = 108/112 (96.43%), Postives = 111/112 (99.11%), Query Frame = 1 

		  

Query: 1   MRINPTTSDPGVSTLEKKNLGRIAQIIGPVLDVAFPPGKMPNIYNALIVKGRDTAGQPMN 60
           MRINPTTS PGVSTLEKKNLGRIAQIIGPVLDVAFPPGKMPNIYNAL+VKGRDT+GQP+N
Sbjct: 1   MRINPTTSGPGVSTLEKKNLGRIAQIIGPVLDVAFPPGKMPNIYNALVVKGRDTSGQPIN 60

Query: 61  VTCEVQQLLGNNRVRAVAMSATDGLTRGMEVIDTGAPLSVPVGGATLGRIFN 113
           VTCEVQQLLGNNRVRAVAMSATDGLTRGMEVIDTGAPLSVPVGGATLGRIFN
Sbjct: 61  VTCEVQQLLGNNRVRAVAMSATDGLTRGMEVIDTGAPLSVPVGGATLGRIFN 112
[Close]
BLAST of Spo06757.1 vs. UniProtKB/TrEMBL
Match: A9XUG9_CORFO (ATP synthase subunit beta, chloroplastic OS=Cornus florida GN=atpB PE=3 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 5.200e-54
Identity = 106/112 (94.64%), Postives = 111/112 (99.11%), Query Frame = 1 

		  

Query: 1   MRINPTTSDPGVSTLEKKNLGRIAQIIGPVLDVAFPPGKMPNIYNALIVKGRDTAGQPMN 60
           MRINPTTS PG+STLEKKNLGRIAQIIGPVLDVAFPPGKMPNIYNAL+VKGRDTAGQP+N
Sbjct: 1   MRINPTTSGPGISTLEKKNLGRIAQIIGPVLDVAFPPGKMPNIYNALVVKGRDTAGQPIN 60

Query: 61  VTCEVQQLLGNNRVRAVAMSATDGLTRGMEVIDTGAPLSVPVGGATLGRIFN 113
           VTCEVQQLLGNNRVRAVAMSAT+GLTRGMEV+DTGAPLSVPVGGATLGRIFN
Sbjct: 61  VTCEVQQLLGNNRVRAVAMSATEGLTRGMEVVDTGAPLSVPVGGATLGRIFN 112
[Close]
BLAST of Spo06757.1 vs. UniProtKB/TrEMBL
Match: M4GXP7_9ROSI (ATP synthase subunit beta OS=Francoa sonchifolia GN=atpB PE=3 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 6.800e-54
Identity = 108/112 (96.43%), Postives = 110/112 (98.21%), Query Frame = 1 

		  

Query: 1   MRINPTTSDPGVSTLEKKNLGRIAQIIGPVLDVAFPPGKMPNIYNALIVKGRDTAGQPMN 60
           MRINPTTS PGVSTLEKKNLGRIAQIIGPVLDVAFPPGKMPNIYNAL+VKGRDTAGQ +N
Sbjct: 1   MRINPTTSSPGVSTLEKKNLGRIAQIIGPVLDVAFPPGKMPNIYNALVVKGRDTAGQQIN 60

Query: 61  VTCEVQQLLGNNRVRAVAMSATDGLTRGMEVIDTGAPLSVPVGGATLGRIFN 113
           VTCEVQQLLGNNRVRAVAMSATDGLTRGMEVIDTGAPLSVPVGGATLGRIFN
Sbjct: 61  VTCEVQQLLGNNRVRAVAMSATDGLTRGMEVIDTGAPLSVPVGGATLGRIFN 112
[Close]
BLAST of Spo06757.1 vs. ExPASy Swiss-Prot
Match: ATPB_SPIOL (ATP synthase subunit beta, chloroplastic OS=Spinacia oleracea GN=atpB PE=1 SV=2)

HSP 1 Score: 225.3 bits (573), Expect = 3.800e-58
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 1 

		  

Query: 1   MRINPTTSDPGVSTLEKKNLGRIAQIIGPVLDVAFPPGKMPNIYNALIVKGRDTAGQPMN 60
           MRINPTTSDPGVSTLEKKNLGRIAQIIGPVLDVAFPPGKMPNIYNALIVKGRDTAGQPMN
Sbjct: 1   MRINPTTSDPGVSTLEKKNLGRIAQIIGPVLDVAFPPGKMPNIYNALIVKGRDTAGQPMN 60

Query: 61  VTCEVQQLLGNNRVRAVAMSATDGLTRGMEVIDTGAPLSVPVGGATLGRIFN 113
           VTCEVQQLLGNNRVRAVAMSATDGLTRGMEVIDTGAPLSVPVGGATLGRIFN
Sbjct: 61  VTCEVQQLLGNNRVRAVAMSATDGLTRGMEVIDTGAPLSVPVGGATLGRIFN 112
[Close]
BLAST of Spo06757.1 vs. ExPASy Swiss-Prot
Match: ATPB_MAGTR (ATP synthase subunit beta, chloroplastic OS=Magnolia tripetala GN=atpB PE=3 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 1.400e-55
Identity = 107/112 (95.54%), Postives = 109/112 (97.32%), Query Frame = 1 

		  

Query: 1   MRINPTTSDPGVSTLEKKNLGRIAQIIGPVLDVAFPPGKMPNIYNALIVKGRDTAGQPMN 60
           MRINPTTS PGVSTLEKKNLGRIAQIIGPVLDVAFPPGKMPNIYNAL+VKGRDT GQP+N
Sbjct: 1   MRINPTTSGPGVSTLEKKNLGRIAQIIGPVLDVAFPPGKMPNIYNALVVKGRDTVGQPIN 60

Query: 61  VTCEVQQLLGNNRVRAVAMSATDGLTRGMEVIDTGAPLSVPVGGATLGRIFN 113
           VTCEVQQLLGNNRVRAVAMSATDGL RGMEVIDTGAPLSVPVGGATLGRIFN
Sbjct: 61  VTCEVQQLLGNNRVRAVAMSATDGLMRGMEVIDTGAPLSVPVGGATLGRIFN 112
[Close]
BLAST of Spo06757.1 vs. ExPASy Swiss-Prot
Match: ATPB_CARPA (ATP synthase subunit beta, chloroplastic OS=Carica papaya GN=atpB PE=3 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 8.800e-55
Identity = 106/112 (94.64%), Postives = 108/112 (96.43%), Query Frame = 1 

		  

Query: 1   MRINPTTSDPGVSTLEKKNLGRIAQIIGPVLDVAFPPGKMPNIYNALIVKGRDTAGQPMN 60
           MRINPT S PGVSTLEKKNLGRIAQIIGPVLDVAFPPGKMPNIYNAL+VKGRDT GQ +N
Sbjct: 1   MRINPTASGPGVSTLEKKNLGRIAQIIGPVLDVAFPPGKMPNIYNALVVKGRDTVGQQIN 60

Query: 61  VTCEVQQLLGNNRVRAVAMSATDGLTRGMEVIDTGAPLSVPVGGATLGRIFN 113
           VTCEVQQLLGNNRVRAVAMSATDGLTRGMEVIDTGAPLSVPVGGATLGRIFN
Sbjct: 61  VTCEVQQLLGNNRVRAVAMSATDGLTRGMEVIDTGAPLSVPVGGATLGRIFN 112
[Close]
BLAST of Spo06757.1 vs. ExPASy Swiss-Prot
Match: ATPB_VITVI (ATP synthase subunit beta, chloroplastic OS=Vitis vinifera GN=atpB PE=3 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 1.100e-54
Identity = 106/112 (94.64%), Postives = 108/112 (96.43%), Query Frame = 1 

		  

Query: 1   MRINPTTSDPGVSTLEKKNLGRIAQIIGPVLDVAFPPGKMPNIYNALIVKGRDTAGQPMN 60
           MRINPTTS PGVSTLEKKNLGRIAQIIGPVLDVAFPPGKMPNIYNAL+VKGRDT GQ +N
Sbjct: 1   MRINPTTSGPGVSTLEKKNLGRIAQIIGPVLDVAFPPGKMPNIYNALVVKGRDTVGQQIN 60

Query: 61  VTCEVQQLLGNNRVRAVAMSATDGLTRGMEVIDTGAPLSVPVGGATLGRIFN 113
           VTCEVQQLLGNNRVRAVAMSATDGL RGMEVIDTGAPLSVPVGGATLGRIFN
Sbjct: 61  VTCEVQQLLGNNRVRAVAMSATDGLMRGMEVIDTGAPLSVPVGGATLGRIFN 112
[Close]
BLAST of Spo06757.1 vs. ExPASy Swiss-Prot
Match: ATPB_CINCA (ATP synthase subunit beta, chloroplastic OS=Cinnamomum camphora GN=atpB PE=3 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 1.100e-54
Identity = 106/112 (94.64%), Postives = 108/112 (96.43%), Query Frame = 1 

		  

Query: 1   MRINPTTSDPGVSTLEKKNLGRIAQIIGPVLDVAFPPGKMPNIYNALIVKGRDTAGQPMN 60
           MRINPTTS PGVSTLEKKNLGRIAQIIGPVLDVAFPPGKMPNIYNAL+VKGRDT GQ +N
Sbjct: 1   MRINPTTSGPGVSTLEKKNLGRIAQIIGPVLDVAFPPGKMPNIYNALVVKGRDTVGQQIN 60

Query: 61  VTCEVQQLLGNNRVRAVAMSATDGLTRGMEVIDTGAPLSVPVGGATLGRIFN 113
           VTCEVQQLLGNNRVRAVAMSATDGL RGMEVIDTGAPLSVPVGGATLGRIFN
Sbjct: 61  VTCEVQQLLGNNRVRAVAMSATDGLMRGMEVIDTGAPLSVPVGGATLGRIFN 112
[Close]
BLAST of Spo06757.1 vs. TAIR (Arabidopsis)
Match: ATCG00480.1 (ATP synthase subunit beta)

HSP 1 Score: 196.8 bits (499), Expect = 8.200e-51
Identity = 97/112 (86.61%), Postives = 103/112 (91.96%), Query Frame = 1 

		  

Query: 1   MRINPTTSDPGVSTLEKKNLGRIAQIIGPVLDVAFPPGKMPNIYNALIVKGRDTAGQPMN 60
           MR NPTTS+P VS  EKKNLGRIAQIIGPVLDVAFPPGKMPNIYNAL+VKGRDT GQ +N
Sbjct: 1   MRTNPTTSNPEVSIREKKNLGRIAQIIGPVLDVAFPPGKMPNIYNALVVKGRDTLGQEIN 60

Query: 61  VTCEVQQLLGNNRVRAVAMSATDGLTRGMEVIDTGAPLSVPVGGATLGRIFN 113
           VTCEVQQLLGNNRVRAVAMSAT+GL RGM+V+D G PLSVPVGGATLGRIFN
Sbjct: 61  VTCEVQQLLGNNRVRAVAMSATEGLKRGMDVVDMGNPLSVPVGGATLGRIFN 112
[Close]
BLAST of Spo06757.1 vs. TAIR (Arabidopsis)
Match: AT5G08670.1 (ATP synthase alpha/beta family protein)

HSP 1 Score: 81.3 bits (199), Expect = 5.000e-16
Identity = 47/108 (43.52%), Postives = 65/108 (60.19%), Query Frame = 1 

		  

Query: 9   DPGVSTLE---KKNLGRIAQIIGPVLDVAFPPGK-MPNIYNALIVKGRDTAGQPMNVTCE 68
           D G  T +   K  +GR+ Q+IG ++DV F   + +P I  +L V+       P  +  E
Sbjct: 69  DEGKKTYDYGGKGAIGRVCQVIGAIVDVRFEDQEGLPPIMTSLEVQDH-----PTRLVLE 128

Query: 69  VQQLLGNNRVRAVAMSATDGLTRGMEVIDTGAPLSVPVGGATLGRIFN 113
           V   LG N VR +AM  T+GL RG +V++TGAP++VPVG ATLGRI N
Sbjct: 129 VSHHLGQNVVRTIAMDGTEGLVRGRKVLNTGAPITVPVGRATLGRIMN 171
[Close]
BLAST of Spo06757.1 vs. TAIR (Arabidopsis)
Match: AT5G08680.1 (ATP synthase alpha/beta family protein)

HSP 1 Score: 81.3 bits (199), Expect = 5.000e-16
Identity = 47/108 (43.52%), Postives = 65/108 (60.19%), Query Frame = 1 

		  

Query: 9   DPGVSTLE---KKNLGRIAQIIGPVLDVAFPPGK-MPNIYNALIVKGRDTAGQPMNVTCE 68
           D G  T +   K  +GR+ Q+IG ++DV F   + +P I  +L V+       P  +  E
Sbjct: 72  DEGKKTYDYGGKGAIGRVCQVIGAIVDVRFEDQEGLPPIMTSLEVQDH-----PTRLVLE 131

Query: 69  VQQLLGNNRVRAVAMSATDGLTRGMEVIDTGAPLSVPVGGATLGRIFN 113
           V   LG N VR +AM  T+GL RG +V++TGAP++VPVG ATLGRI N
Sbjct: 132 VSHHLGQNVVRTIAMDGTEGLVRGRKVLNTGAPITVPVGRATLGRIMN 174
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BLAST of Spo06757.1 vs. TAIR (Arabidopsis)
Match: AT5G08690.1 (ATP synthase alpha/beta family protein)

HSP 1 Score: 81.3 bits (199), Expect = 5.000e-16
Identity = 47/108 (43.52%), Postives = 65/108 (60.19%), Query Frame = 1 

		  

Query: 9   DPGVSTLE---KKNLGRIAQIIGPVLDVAFPPGK-MPNIYNALIVKGRDTAGQPMNVTCE 68
           D G  T +   K  +GR+ Q+IG ++DV F   + +P I  +L V+       P  +  E
Sbjct: 69  DEGKKTYDYGGKGAIGRVCQVIGAIVDVRFEDQEGLPPIMTSLEVQDH-----PTRLVLE 128

Query: 69  VQQLLGNNRVRAVAMSATDGLTRGMEVIDTGAPLSVPVGGATLGRIFN 113
           V   LG N VR +AM  T+GL RG +V++TGAP++VPVG ATLGRI N
Sbjct: 129 VSHHLGQNVVRTIAMDGTEGLVRGRKVLNTGAPITVPVGRATLGRIMN 171
The following BLAST results are available for this feature:
BLAST of Spo06757.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|11497535|ref|NP_054943.1|6.1e-56100.ATP synthase CF1 beta subunit ... [more]
gi|15988217|pdb|1FX0|B8.8e-5598.2Chain B, Crystal Structure Of ... [more]
gi|377580686|gb|AFB70481.1|1.5e-5497.3ATPase beta chain, partial (ch... [more]
gi|306485981|gb|ADM92639.1|2.0e-5496.4ATP synthase CF1 beta subunit ... [more]
gi|836642810|ref|YP_009143814.1|3.3e-5496.4ATP synthase CF1 beta subunit ... [more]
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BLAST of Spo06757.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
H6T8A7_PORAR1.0e-5497.3ATP synthase subunit beta (Fra... [more]
F4YK16_DAVIN1.4e-5496.4ATP synthase subunit beta (Fra... [more]
A0A0G2QXY4_SALBI2.3e-5496.4ATP synthase subunit beta, chl... [more]
A9XUG9_CORFO5.2e-5494.6ATP synthase subunit beta, chl... [more]
M4GXP7_9ROSI6.8e-5496.4ATP synthase subunit beta OS=F... [more]
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BLAST of Spo06757.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
ATPB_SPIOL3.8e-58100.ATP synthase subunit beta, chl... [more]
ATPB_MAGTR1.4e-5595.5ATP synthase subunit beta, chl... [more]
ATPB_CARPA8.8e-5594.6ATP synthase subunit beta, chl... [more]
ATPB_VITVI1.1e-5494.6ATP synthase subunit beta, chl... [more]
ATPB_CINCA1.1e-5494.6ATP synthase subunit beta, chl... [more]
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BLAST of Spo06757.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 4
Match NameE-valueIdentityDescription
ATCG00480.18.2e-5186.6ATP synthase subunit beta[more]
AT5G08670.15.0e-1643.5ATP synthase alpha/beta family... [more]
AT5G08680.15.0e-1643.5ATP synthase alpha/beta family... [more]
AT5G08690.15.0e-1643.5ATP synthase alpha/beta family... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004100ATPase, F1 complex alpha/beta subunit, N-terminal domainPFAMPF02874ATP-synt_ab_Ncoord: 23..95
score: 9.3
IPR004100ATPase, F1 complex alpha/beta subunit, N-terminal domainunknownSSF50615N-terminal domain of alpha and beta subunits of F1 ATP synthasecoord: 19..97
score: 3.34
NoneNo IPR availableGENE3D2.40.10.170coord: 12..97
score: 9.1
NoneNo IPR availablePANTHERPTHR15184ATP SYNTHASEcoord: 1..112
score: 1.1
NoneNo IPR availablePANTHERPTHR15184:SF43ATP SYNTHASE SUBUNIT BETA, CHLOROPLASTICcoord: 1..112
score: 1.1

GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0046034 ATP metabolic process
biological_process GO:0015991 ATP hydrolysis coupled proton transport
biological_process GO:0015986 ATP synthesis coupled proton transport
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005743 mitochondrial inner membrane
cellular_component GO:0005886 plasma membrane
cellular_component GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1)
cellular_component GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o)
molecular_function GO:0005524 ATP binding
molecular_function GO:0046933 proton-transporting ATP synthase activity, rotational mechanism