Spo06838.1 (mRNA) | SpinachBase

Overview


Name	Spo06838.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	KRR1 small subunit processome component (KRR-R motif-containing protein 1)
Location	SpoScf_01633 : 121457 .. 130923 (-)
Sequence length	1706

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAACATTCCTCCCTTGGCCGACCCCGTTTCACCGTTCCGTTTCCGTTTCCCTAGTTTATAAAGTTCGATTAACCGCTGTCTGTTCTCTCTCTCTCTTTCCCCTTCCTGACCTTGAGTTCCGCCTCCACCGCAGACATGGCAGACATAGAGCAGCAAAACAATGTCGATGAAGAAGTAGTACCAAAACAGAGGACTAAACACAAGGGTAAACACGATAAGGACAAGCCATGGGATGACCCCAGTATCGACCATTGGAAAATCGAAAAATTCGACCCTTCATGGAACGATTCTGGCTTGCTCGATGTCAGCTCTTTCTCTACTATCTTCCCCCAATACAGAGGTTAATTTCTTCTCTTACTCTAATTAACTTCATATCCCCCCTTGATTATGGCTTCTATTTTTTATAATTTCAATTGGGTATGCTTTTTTCATTCATTTACTTGATTTTTCGAGCTGCTTGACTTGCGGCGGAACGTTTTTCTGTAGATAAATGCGCGGTTCGATCTATATGTGTAATTTTTTAGCTTAGTTTGTTGTGTTAATTTAGGGTTTTTGCCTCTTTTTTGTGTGTGTTAATTTAGGGTTTATGCGTCCTAATTAAAACTAGTTTGCTGTGTTAATTTAGGGTTCGTGCCTCATACTTAAGCTTAGTTTCCTGTGTCATTCCAGGGTTCTTATCTGAATTGGGTTTGCTCATTTCTTTTTGCATTTGCACTTTCATGGTTTACTATTAAGTTTTGGAAGATAAGTTTGCTTAATTTTGGACACTCCCTCCATTCCTCTGAATTTGTTACTGTCTGCATGCCTTAGGAAGGGAGAGAGATGGTATAGAAGAGGTATGAAAGAAAAAAGCATAAAGTATTTATAGTTTGGTAAAAGTGTAAAATAACAAACATGAAGTGTAACAATTTGAAATTGGAGGGAATACAATTTTCATGATTGTGTTTTGATATTTGTGTGGTTAACCTGTGTAATCAGAAAAAGTGCATTTCCCCACCTCCTCGGTAGTTTGGCTGAGATGAGTAGTTGTCGAACAACTCAAACCTACCTAGCTTGCTTTTGGATCTATCGATGCTTTGGGCTCTGTGTTTTGGAATTTGGTATACATATGCCTCTCAGAATGGTCTTAATCTATTCATCCAGAGTCCTCTTTTCTTTATAATTTGCAGCCATCTGGAATCTCCTTTTCTTTCACGCGTCCTACTTTTTCTTTTTGTTCTTATAATGTTGAAAACCATTTTGTCCAAGAGAAGAACATCTTATTTCGAACCCCTAGCAGAAATGTAGTTCTCTTAAGAACCGCTTCATTCAGTCAAGAACTTTACAAAAATGACTATTACTGTTGTCCTCAGAGGAATAAAAGATTGTTTTTATGAGACATTCCATTTATTCTTATTAGTCTTGTATGTTAAACCATGTTCATTAACACTCTATTAAATCTTGTAGAGGTCTTACCTAAAGAGCTAGTGGAAGGATTTCTATGTTTAGTCAATCTGTGGAAATTGTTGCAAAATGGTGAAACCGGTAAAAGTGAATGTGCGAGGATAGCAAAATGGTGTTACAAGATATTAAACAAAAGTTATCTAATATAGAAGAATGAATTGAGCCATATATATTTTCCACTTCTGCTTATGGGACTTAGTGGTATAAGAGTTCATTATGAGTTGGTGACTAGCATGGACTCCAATCAGCCATATATTATCTAATAACTGGTAAGAACTAAGAAAGTTTCTGGGATGAATTTATTTGGATATTTGCATTAAAACTTGCTGGCAGCCTGACAGGCCGGTGCCATTGTTATTCCTTCCCTTCTCTTTGAGTATTACTTTTATTACTTCAGGAGATACAATTTTTATGGTTAAACTATTTTGTATGGAAAATGTTTGGGTTATTCACTGTTATTTATCGTTTTCTATGTTTTACAGAGAAATATCTGCAAGATGTTTGGCCAACGGTAAAGGCTGCATTGCGGGAGCATGGTATTTCATGTGAGCTTAATTTGGTATGGTTTTGTTCTTTTATGTTCCCAATTTGAAAAGCTATGACGTAGACCTCTGTGGTTACTTATTAGGTTGATGACAGAGAGGCTGTTATTACTTATTAGGTTGATGCATACTTACACTTTCCTCTAAATTCTCTGCCCCCACCCACTAGACAGATGTGATTGTCAAATGTCATGCTTGTACTAATAGCAGACCTACGGCTACAATTCTTTCCACAAGCTCTGCATAACTGATTCAAATAAGAAGGCTAGGATAACTGGAGAAGGCTGATAAGTCCTTTTTTCCTTGGGAAATAATGTCTTACTCTTCTTTTTAGTTTTTTAACCTGTCACGATAATGTTACATAGGGAGTAATACTTGTGAAGTCGGCAGTTCAGTGACTGAGGTTTGTTATAATTTAGGTTCTGGAGACACGGGTCCCTGGGACTTTAACAATGCTACATTAAGGAATAAGTATTGAGACTAGCTTGATTAAGGATGTCTTTGACAATGCCATATGAATTGTCGGTAATAAAATCCGATATTAATTGCCTGGATTACCTTCTCAGAATCTCAAAAGTATTTTTGATTCACGCCAATCTTCTTAGGTAAGTTTTGTGATAAGGTTGAGGACTGCCAGCACTTCACGTTGGGGGGGTGGGGGACTGAAATTCTCTAGGTAAGGATCCTGTGCTTAGCATTTAGCAATTACCTGGATGAATGAGGCGAATCTAATAGACGTTACAGACCACCCTATGGCCACCTTGCTGGTATTAGGATTGTTTTACTTTCTAAGAGGCGTCCACCTTAGTGGTGAACTGAGGAGCAGAATCTATTTCTCTAGAGAGAATCTTCAGTGATTCTAAAGAGGGCTCTCCTCTTGTTTCTGGAGCTGTCTTGCTTGGGTACCTTTGAGAAGTTCTCTTGTTTTCACATTAGAATTCATCCATGTTTCAGTCTCTTTTAGTCAATGTAATTAGATTCAAATTCACACTCTTGAAAAAATGAAAATAACTGAGCTGTAAAGTAATACACCTACACTTCTATGGATCCCAACCAAAAGTCCGAGACAGAATTTCTATGTTACTATACACAAAGAGTTCACATAATATGACCGATTTTTTAGTCCAAAATTAACAAGGCTGCAAAATATTTGCCTTGTACTTGAGACTTATTTTCTTTTCTCTCCATATTGCATCACTTTCTACAAAACAAGCTCTATAACTGCAGATTGCAGTAGCTGTGTGCTGATTCTACCCAGTTGAATACCCTGATGTGCATGTGTGATTAATTAGCATTTCTCTATTTAGTAACCTGTAGCTTCATTATTGCAAACTAATATTTTCCTACACACTTTAGGCTCTGTCCTATTTTTGGTTGGTCTATTTACAGAAAGTATCTCTGTACTTCATTCTCTCAGTTTCCATGGGAAGTCCACATAGCCCTGAAAAAACCATGCAGAAGAAAGCCTATAGACATCAATAGTAGTTAGATTCTTTTCAATTGAGACTGCTCATTTAAGCAACCTGTAGTAGCCGACATCTTTTGGAGAGTTAGCCAGAGAATAATTTCATTCCTCGATGTAGGGTCATTATTACAAACTAATATTTTCAAGCTGCTTTGTGCTTCGTCCGAGTTTTTGGTTGGTCTTTATGTAAAAAGTTGTCCCTGTACTTCATTCTCCCAGTGTCCATAGGAAGTCTACATAGCCCTTTTATCTATAAAAAGATCCATAAACACCATGCAGAATAAAGCCTATAGACATCTGTAGTAGTTAGGTTCTTTTCAGTTGAGACTTCTCATCTCAGCAACCTGTAGTAGCTGGCATCTTTTGAAGAGTTAACCAAAGAATACATACTTCTTTGATTTAGTCTTGTTGCTTTATTGCAAACCAGTTTTTCCACAGCAAGGATCTGTCTAAGTTTTTGTTTCGTCTTTTTTATACAAAGTATCCCTGTACTTTATTCTCTCAGCCTCCATACATAGTCCTCATAGCCTTGGGTCCCGTGATATCTGAGAAAAAACATAAAAACGATAACGTTTTGTGTCCGAATTGTTCAGGTAGTATTTTTGGAGACGATGTCAACTTTCTTCTCCCACACTTCAGTGGCAACTACTTGTCTTTCTCTTTTCTAATATCTATCAGGTTTATAAAAAATCAGCTATTATTCCTTCAAATTAGTATCGACAGTAACTTGAGCAAAAAAAAGGAAGAAGAAAGACAATTAGATCGATATTATATTATCACAGAAGGTTAAAGGATACATTATCAAGCATTCAAGTGCCTGATTCACTGAAAGCTACTCAATATTCTGGATACCTTTCTCTTTGCCTACTAATCCCTTATTTATAGCATTTCTGAGTCTTTTTTCCATGTAACCAACCAACTGTCTTCCTCTTCAAGCTACCCTTACTAAACTAATTGTACAATACCTAAAACTACCCCCTTTCTATTAGGCTAATTCGTTACAGAGGGACTGTAAAACAGTCATTTTATTTGTCTCACATGTCACAGTTAAATTCGACATAGTAATCGCTTAATTGTAGCTGACATAGTCATTTTATGCGTATGGAGATTCTTTATTGATGGAGCAATCATATAATGTATTATGTACTGAAAATTAGCCTCTCATTGAAGGGGCTTTACTTGGTTATAAAGTTGAGACCTAGAGAATCGCTGGAAGGGGCTTTGATTGATGGGAATGCTAAAACTTGATATGGTACACTCACTGTGTTTCGGGATACACCCTTTGCTAAAATTGTTCTTTTCGATGCTATTCTTAGTTCTCGGTTAATCAGGGAATACTGTGGATGGTAGTGATGGTAAATGGGAAAACAAGATGACAGTTGCTTGTGTCCTAGTTGAGTTAGTTGTTTACCAGATTCCCTTGTCCAAAACGAAACAATTATGATTTATTGACAGAGATCACCATAATTAACTCCCTTCATCCCTCCTATTTTATCACAATAGGGTTAAACACACAAATATTGAACCTAGAGCATAGCTAGGGTTTAGCACAGGCTATTTGAAACATTTAAAAAGAAAAAGGGATACTGTTGCATTTTATCATTTGAGATTAGTGCCCGCAAGGGTATTTTGGGAAATGAAATGGGCCTTGTCCCAAAAAAAAAAGAAAAATAATCTGGGTCATCCATGTTAAGGAAGGGTGGAAAATGTTAGGGACCAAGGGAGTAGCTGTTTATTCATCATGTTGAGAAATATTTGAGCCTGACTCTAATTTTTCTTGGTTTTCAGGTTGAAGGAACTATGACTGTTTCAACAACTAGAAAGACCAGAGATCCATACATTATAGTGAAAGCTAGGGACCTCATTAAACTTTTGTCGAGAAGTGTTCCGGCACCTCAGGTATGTCTTCAACTCCTTTTTGTGTCATTTATATATGTAGTTCACCCTATAGTTTTCCGGCACCTCAGGTATGTCTTCAACTCCTTTTTGTGTCATTTATATATGTAGTTCACCCTATGTTACTGTCTTTTCTCCCCACTATTTAAGATTCTGTTTGAAGTATATTCCTATAAAACAACGATGATCTACATTCTAGTTTGCATGCAATCTTCCACCCCTCTTCTCAGTTGAAGTTTTTGGGTATACTCACTCGGTGTGGCTGTTTTGTGTGTTTAGGCAATCAAGATACTTGATGACGAAATGCAATGTGATATCATCAAGATTGGTAATCTAGTGAGAAATAAGGTGCGTTTCGTTCTGCTGAAAGGTGTATTTACTGTATTTGCTTCATTTGTCTTTTCTTTTGTGATGGTTAATCACTATGCACACTGCCAGTTCATTATTATGCTCTTCAATTCTGATGCATATAATGATCACACGGAGAACAAAATAGAAGGTGAAGGCGTGAAGCTGTGTCCTTGTCCATTTAATATTATACTTGGGTGGTATGAGCTGATCTAGAATTGCACTGACCTAAGCAAGCAATTTAAGTGTTGAAAACAAACGCAGATCTTGCTCGGATAATCTTATTGTGACACAGTATATGCCACTTGCTGAAGATAGTATCAGTTAGACTATACTTTCTGTAGTATTTAAACTCAACATTCAACCCGGCCTTATTCTGTCAACCACGACACCCGGTTGCGGACAGAAGTTATGGGTTGGATTCTCCGTGGAGAAATGGATACAACATGTTTGTTGAAAGAAGAAAGCAAAAGGCGATGAAATCAGAACTCTCACCTTCTCATATTAAAACAATAGCGTGTTAATGTCGAAATATCAGTAGTTTATCTGACCTAAATCTGAAAATTAAGTCATCAAATCAATACTCAATAGGAAAAGAGAATGAAATGCTGGGGTTTCTGGATGCTGGTGATATTTGACTGTTGTTATGGTGTTGGGACAGATGATTGGGGGTAGCCAGCTGGTCAAGTGTTTCTTGACCATAGTAAAAGAGGTCTTTTGTCAAACTAATTTTTGCCATTTGATAAAAATATAAACAGATGTTCATAATACTAATCAAAATACTAATCAAAATACTACTAATGTACTACCATGAAAGCAACTTCAAATCTCCAATAGAATCATTGTTACTTTTTTTTAATTATGACAGATAAAAGTTTGAGGAAAAAGAAGTTATTCAGTTCAAACTGTTGCAAATAATCATGCTAATTCACCATTCCATTCTATTGCGATGTGAAATTGGACAATGCATAGGAAATAATGTCTCCGTTAAATTGTCACATTGAAGTCTTATTTTGAATGTGTCAAAATTTGAAACACAGGTTATATAGCTTTTGAAAAAAGGTTATATAGCTTATGTGAATAAAGTATTTCTTGTCTCTGTCCAATATGTGCAAGTAATTGTGATAGCTTAAGCTTATGTGTATTATGGACACACTGCTTCAGGCGTAGCTTGATTGTTTGTATTGCTGATTGCAGGCTCGCTTTGTGAAGCGGCGGCAACATCTTCTTGGTCCCAATAATTCTACCTTAAAGGTTTGTATTTGTCTCAAGTAGAAGAAAATCATGCCCTTGAGAAATTGGGGGAAAGTGAGCGTGTGAAATTTTGGAGGAAGTATGGTGCTATGGTAGACTGATGGCCAACATAATTTTTTTTAAAAACACTTCTGTGGTTCACGCTTATAATAGCTATGTAGGGAATTTGAATAGGGAGTTGATCGGTGGGTGGGTTGTCGGGAAGACACACTTAATTTCTCTGACTTAGTGTTTCCTACGATGCAGGCACTTGAAATCTTGACAGGCTGCTACATCCTTGTTCAGGTTTGCTTCAAAAACTACTTGTTATGTTTGAGATCTTTTCTTCAGGAAACAATTTTTCAGGAATGTCTGTCTTGTAAGAATCCCAACAAAAAGTTCAAAACAGTATTACCGAATTTCTTAATCACCCCGCGTACCGAAAACATAACACGAGAATGACACATTTTTGGTCTAATTTATCAAATTAGGTAGTGAATTTCGAACCCATACCCAATCTAACAGTAAAGGATCAGGTAACAATGATTCAAAACTAACTAATAGTGATATCTTTTTAATCGAAATAAGTAACGTATGGAGTATGATTATAAAAAGACCCACCCACAATCTTCCCCATTGTTCTGGGATTACCATGGAGGATATTTGAACTTTATTTCAAATTCGTTTTGATTTTTAAAATAAATATTGTATAAATAAAATAATTTAATATTTGCAACAGAATTAGTTACGAGTCTTATGACCTATTTCAAGTAGATAACTAAAGTTGTGATTACAATGAGTTAACGCCAAGTTGGGATATTCTAAGAAGACTGCCCAAATATGAGATTATTCTAATAAATTCCTCCTTTATTTATGAGATGAGAATTGAATTTGATTCCTCTCTTCTCCCATCTCCGTTGGAATTTATGCAGGGAAACACAGTTGCAGCCATGGGATCTTTTAAAGGATTGAAACAGGTCAGGAGAATTATAGAAGACTGCATACAGAATAAAATGCATCCAATATATCACATCAAGGTACAAACACTCGTCTGCTTCTCTTGTAAGATATGGTTGCTATTGTGTTTCTGTTTTCACCGAAGGAAAATAGTAATTTGGCAATTGCAGACTTGCAGTTGGATATTTGCTGTTGCGAATACCCATTTGTCAGTCATGTTATATACTTACACTATTCAATTTCACTGACAGATTCTCATGATGAAGAGGGAACTCGCAAAGGATCCTGCCCTTGCAAGTGAGAACTGGGATAGGTTTCTACCACAGTTCAAGAAGTATGACATTTGTTATCGCATGCAGTAGCAATTAGTGTTTATTCTTTAAAATGCATTGTTTACCTGATGGTCAATTTTTTTTCTCCTCTTGAATTCAGGAAAAATGTTCAGAAAAAGAAAGGCAAGGGTAAGGAGAAGAAACCTTACACACCGTTCCCACCTCCACAGCAGCCTAGCAAGGTGAGAATTTTATGGTCCTTGTAAATTTCTTGCTTGTAGACAATAATATGGTAATGGATAGCTTATCTATGTAAAAAAGCTGGTTTGATTGACGTTGAAAATATGATGTTCGGATACCTTCATTAACAAAACATTCAATGTAGATTGACCAACAATTGGAGACTGGAGAGTACTTCTTGAGTGAGGAAAAGAAGTCGGCGAAGATGTGGCAAGAGAAGGAGGTGAAACAGGCAGAGAAAACAGCTGAAAACAAAAGAAAAAGAGATGCTGCTTTTGTTCCACCTGAGGTTTGAGACGTTCAACTTGTCAGTGGAAATTGTTAATTCGGAATTTTTGCAAGATACTTAACACCATGTGCTATTATGTTATAGGAAACTACGGCGGAAGGTGATAAGAGTGCAACAGTTAGTAAAGGTGATGTCAGTTCCATGGCACAATCATTGAAGGTAATTGAGTAGAGCAATTTATTCTTGTTTAAACATCGTATGCTTTGCTATACTTGGTTAGTTGGTTTGACATCGAGTTGATGTTGTAATATTCTGCAGAAAAAAGCGAAAGAATTTGGAAAGAAGAAATCTGCCAACCACATAGATCCTCAAGCTTATATTGCTGGCTCCGAAGCACCGGCAAAGAAGAAGACCAAAAGCTCCAAATCTTGATCATTAATCCATATTTGTCAATTTTGATCTTAGTGAGACTGATTACATTATGTTGATGACTTGATATGATTGCAAAGTTCATAAAGTTTAACTTGACTTTATACTCTGAAATACTCTAATTTTCGTGCAATCAAAAGCCAATGTCTTCAATGCAAAGTTCTGTTTTTTTAATCAAATGTCATTTGGTGCGCAAAGGCTACACTTACCCTCAGTGTAAGTGGTCCCTTGGTACCCTTCCTTTTCATTGGCCATGTCCACATCAGATTTGCCACGTCAGAGCAAAATTTTCAAAACAAAAATTCAGTTTGATTTTGAATACGAAATTCAAACTAGGAAATTCTTTTCTCTTTATTTTCTTCGATGAAACCAATGTTTGTGATAAAAATTTCAGTCAGATCTATTCCTCCCCT

mRNA sequence

TAACATTCCTCCCTTGGCCGACCCCGTTTCACCGTTCCGTTTCCGTTTCCCTAGTTTATAAAGTTCGATTAACCGCTGTCTGTTCTCTCTCTCTCTTTCCCCTTCCTGACCTTGAGTTCCGCCTCCACCGCAGACATGGCAGACATAGAGCAGCAAAACAATGTCGATGAAGAAGTAGTACCAAAACAGAGGACTAAACACAAGGGTAAACACGATAAGGACAAGCCATGGGATGACCCCAGTATCGACCATTGGAAAATCGAAAAATTCGACCCTTCATGGAACGATTCTGGCTTGCTCGATGTCAGCTCTTTCTCTACTATCTTCCCCCAATACAGAGAGAAATATCTGCAAGATGTTTGGCCAACGGTAAAGGCTGCATTGCGGGAGCATGGTATTTCATGTGAGCTTAATTTGGTTGAAGGAACTATGACTGTTTCAACAACTAGAAAGACCAGAGATCCATACATTATAGTGAAAGCTAGGGACCTCATTAAACTTTTGTCGAGAAGTGTTCCGGCACCTCAGGCAATCAAGATACTTGATGACGAAATGCAATGTGATATCATCAAGATTGGTAATCTAGTGAGAAATAAGGCTCGCTTTGTGAAGCGGCGGCAACATCTTCTTGGTCCCAATAATTCTACCTTAAAGGCACTTGAAATCTTGACAGGCTGCTACATCCTTGTTCAGGGAAACACAGTTGCAGCCATGGGATCTTTTAAAGGATTGAAACAGGTCAGGAGAATTATAGAAGACTGCATACAGAATAAAATGCATCCAATATATCACATCAAGATTCTCATGATGAAGAGGGAACTCGCAAAGGATCCTGCCCTTGCAAGTGAGAACTGGGATAGGTTTCTACCACAGTTCAAGAAGAAAAATGTTCAGAAAAAGAAAGGCAAGGGTAAGGAGAAGAAACCTTACACACCGTTCCCACCTCCACAGCAGCCTAGCAAGATTGACCAACAATTGGAGACTGGAGAGTACTTCTTGAGTGAGGAAAAGAAGTCGGCGAAGATGTGGCAAGAGAAGGAGGTGAAACAGGCAGAGAAAACAGCTGAAAACAAAAGAAAAAGAGATGCTGCTTTTGTTCCACCTGAGGAAACTACGGCGGAAGGTGATAAGAGTGCAACAGTTAGTAAAGGTGATGTCAGTTCCATGGCACAATCATTGAAGAAAAAAGCGAAAGAATTTGGAAAGAAGAAATCTGCCAACCACATAGATCCTCAAGCTTATATTGCTGGCTCCGAAGCACCGGCAAAGAAGAAGACCAAAAGCTCCAAATCTTGATCATTAATCCATATTTGTCAATTTTGATCTTAGTGAGACTGATTACATTATGTTGATGACTTGATATGATTGCAAAGTTCATAAAGTTTAACTTGACTTTATACTCTGAAATACTCTAATTTTCGTGCAATCAAAAGCCAATGTCTTCAATGCAAAGTTCTGTTTTTTTAATCAAATGTCATTTGGTGCGCAAAGGCTACACTTACCCTCAGTGTAAGTGGTCCCTTGGTACCCTTCCTTTTCATTGGCCATGTCCACATCAGATTTGCCACGTCAGAGCAAAATTTTCAAAACAAAAATTCAGTTTGATTTTGAATACGAAATTCAAACTAGGAAATTCTTTTCTCTTTATTTTCTTCGATGAAACCAATGTTTGTGATAAAAATTTCAGTCAGATCTATTCCTCCCCT

Coding sequence (CDS)

ATGGCAGACATAGAGCAGCAAAACAATGTCGATGAAGAAGTAGTACCAAAACAGAGGACTAAACACAAGGGTAAACACGATAAGGACAAGCCATGGGATGACCCCAGTATCGACCATTGGAAAATCGAAAAATTCGACCCTTCATGGAACGATTCTGGCTTGCTCGATGTCAGCTCTTTCTCTACTATCTTCCCCCAATACAGAGAGAAATATCTGCAAGATGTTTGGCCAACGGTAAAGGCTGCATTGCGGGAGCATGGTATTTCATGTGAGCTTAATTTGGTTGAAGGAACTATGACTGTTTCAACAACTAGAAAGACCAGAGATCCATACATTATAGTGAAAGCTAGGGACCTCATTAAACTTTTGTCGAGAAGTGTTCCGGCACCTCAGGCAATCAAGATACTTGATGACGAAATGCAATGTGATATCATCAAGATTGGTAATCTAGTGAGAAATAAGGCTCGCTTTGTGAAGCGGCGGCAACATCTTCTTGGTCCCAATAATTCTACCTTAAAGGCACTTGAAATCTTGACAGGCTGCTACATCCTTGTTCAGGGAAACACAGTTGCAGCCATGGGATCTTTTAAAGGATTGAAACAGGTCAGGAGAATTATAGAAGACTGCATACAGAATAAAATGCATCCAATATATCACATCAAGATTCTCATGATGAAGAGGGAACTCGCAAAGGATCCTGCCCTTGCAAGTGAGAACTGGGATAGGTTTCTACCACAGTTCAAGAAGAAAAATGTTCAGAAAAAGAAAGGCAAGGGTAAGGAGAAGAAACCTTACACACCGTTCCCACCTCCACAGCAGCCTAGCAAGATTGACCAACAATTGGAGACTGGAGAGTACTTCTTGAGTGAGGAAAAGAAGTCGGCGAAGATGTGGCAAGAGAAGGAGGTGAAACAGGCAGAGAAAACAGCTGAAAACAAAAGAAAAAGAGATGCTGCTTTTGTTCCACCTGAGGAAACTACGGCGGAAGGTGATAAGAGTGCAACAGTTAGTAAAGGTGATGTCAGTTCCATGGCACAATCATTGAAGAAAAAAGCGAAAGAATTTGGAAAGAAGAAATCTGCCAACCACATAGATCCTCAAGCTTATATTGCTGGCTCCGAAGCACCGGCAAAGAAGAAGACCAAAAGCTCCAAATCTTGA

Protein sequence

MADIEQQNNVDEEVVPKQRTKHKGKHDKDKPWDDPSIDHWKIEKFDPSWNDSGLLDVSSFSTIFPQYREKYLQDVWPTVKAALREHGISCELNLVEGTMTVSTTRKTRDPYIIVKARDLIKLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKARFVKRRQHLLGPNNSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIIEDCIQNKMHPIYHIKILMMKRELAKDPALASENWDRFLPQFKKKNVQKKKGKGKEKKPYTPFPPPQQPSKIDQQLETGEYFLSEEKKSAKMWQEKEVKQAEKTAENKRKRDAAFVPPEETTAEGDKSATVSKGDVSSMAQSLKKKAKEFGKKKSANHIDPQAYIAGSEAPAKKKTKSSKS

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo06838	Spo06838	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo06838.1	Spo06838.1-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo06838.1.utr5p.1	Spo06838.1.utr5p.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo06838.1.CDS.12	Spo06838.1.CDS.12	CDS
Spo06838.1.CDS.11	Spo06838.1.CDS.11	CDS
Spo06838.1.CDS.10	Spo06838.1.CDS.10	CDS
Spo06838.1.CDS.9	Spo06838.1.CDS.9	CDS
Spo06838.1.CDS.8	Spo06838.1.CDS.8	CDS
Spo06838.1.CDS.7	Spo06838.1.CDS.7	CDS
Spo06838.1.CDS.6	Spo06838.1.CDS.6	CDS
Spo06838.1.CDS.5	Spo06838.1.CDS.5	CDS
Spo06838.1.CDS.4	Spo06838.1.CDS.4	CDS
Spo06838.1.CDS.3	Spo06838.1.CDS.3	CDS
Spo06838.1.CDS.2	Spo06838.1.CDS.2	CDS
Spo06838.1.CDS.1	Spo06838.1.CDS.1	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo06838.1.utr3p.1	Spo06838.1.utr3p.1	three_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo06838.1.exon.12	Spo06838.1.exon.12	exon
Spo06838.1.exon.11	Spo06838.1.exon.11	exon
Spo06838.1.exon.10	Spo06838.1.exon.10	exon
Spo06838.1.exon.9	Spo06838.1.exon.9	exon
Spo06838.1.exon.8	Spo06838.1.exon.8	exon
Spo06838.1.exon.7	Spo06838.1.exon.7	exon
Spo06838.1.exon.6	Spo06838.1.exon.6	exon
Spo06838.1.exon.5	Spo06838.1.exon.5	exon
Spo06838.1.exon.4	Spo06838.1.exon.4	exon
Spo06838.1.exon.3	Spo06838.1.exon.3	exon
Spo06838.1.exon.2	Spo06838.1.exon.2	exon
Spo06838.1.exon.1	Spo06838.1.exon.1	exon

Homology

[Close]

BLAST of Spo06838.1 vs. NCBI nr
Match: gi|902169634|gb|KNA07686.1| (hypothetical protein SOVF_169610 [Spinacia oleracea])

HSP 1 Score: 752.7 bits (1942), Expect = 3.200e-214
Identity = 386/386 (100.00%), Postives = 386/386 (100.00%), Query Frame = 1


		  
Query: 1   MADIEQQNNVDEEVVPKQRTKHKGKHDKDKPWDDPSIDHWKIEKFDPSWNDSGLLDVSSF 60
           MADIEQQNNVDEEVVPKQRTKHKGKHDKDKPWDDPSIDHWKIEKFDPSWNDSGLLDVSSF
Sbjct: 1   MADIEQQNNVDEEVVPKQRTKHKGKHDKDKPWDDPSIDHWKIEKFDPSWNDSGLLDVSSF 60

Query: 61  STIFPQYREKYLQDVWPTVKAALREHGISCELNLVEGTMTVSTTRKTRDPYIIVKARDLI 120
           STIFPQYREKYLQDVWPTVKAALREHGISCELNLVEGTMTVSTTRKTRDPYIIVKARDLI
Sbjct: 61  STIFPQYREKYLQDVWPTVKAALREHGISCELNLVEGTMTVSTTRKTRDPYIIVKARDLI 120

Query: 121 KLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKARFVKRRQHLLGPNNSTLKALEILTG 180
           KLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKARFVKRRQHLLGPNNSTLKALEILTG
Sbjct: 121 KLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKARFVKRRQHLLGPNNSTLKALEILTG 180

Query: 181 CYILVQGNTVAAMGSFKGLKQVRRIIEDCIQNKMHPIYHIKILMMKRELAKDPALASENW 240
           CYILVQGNTVAAMGSFKGLKQVRRIIEDCIQNKMHPIYHIKILMMKRELAKDPALASENW
Sbjct: 181 CYILVQGNTVAAMGSFKGLKQVRRIIEDCIQNKMHPIYHIKILMMKRELAKDPALASENW 240

Query: 241 DRFLPQFKKKNVQKKKGKGKEKKPYTPFPPPQQPSKIDQQLETGEYFLSEEKKSAKMWQE 300
           DRFLPQFKKKNVQKKKGKGKEKKPYTPFPPPQQPSKIDQQLETGEYFLSEEKKSAKMWQE
Sbjct: 241 DRFLPQFKKKNVQKKKGKGKEKKPYTPFPPPQQPSKIDQQLETGEYFLSEEKKSAKMWQE 300

Query: 301 KEVKQAEKTAENKRKRDAAFVPPEETTAEGDKSATVSKGDVSSMAQSLKKKAKEFGKKKS 360
           KEVKQAEKTAENKRKRDAAFVPPEETTAEGDKSATVSKGDVSSMAQSLKKKAKEFGKKKS
Sbjct: 301 KEVKQAEKTAENKRKRDAAFVPPEETTAEGDKSATVSKGDVSSMAQSLKKKAKEFGKKKS 360

Query: 361 ANHIDPQAYIAGSEAPAKKKTKSSKS 387
           ANHIDPQAYIAGSEAPAKKKTKSSKS
Sbjct: 361 ANHIDPQAYIAGSEAPAKKKTKSSKS 386

[Close]

BLAST of Spo06838.1 vs. NCBI nr
Match: gi|731325237|ref|XP_010673406.1| (PREDICTED: KRR1 small subunit processome component homolog [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 662.9 bits (1709), Expect = 3.400e-187
Identity = 337/384 (87.76%), Postives = 363/384 (94.53%), Query Frame = 1


		  
Query: 4   IEQQNNVDEEVVPKQRTKHKGKHDKDKPWDDPSIDHWKIEKFDPSWNDSGLLDVSSFSTI 63
           +E Q+NVDE   PKQRTKHKGKHDKDKPWDDPSIDHWK+EKFDPSWN++G+L+VSSFSTI
Sbjct: 1   MEAQSNVDE--APKQRTKHKGKHDKDKPWDDPSIDHWKVEKFDPSWNETGMLEVSSFSTI 60

Query: 64  FPQYREKYLQDVWPTVKAALREHGISCELNLVEGTMTVSTTRKTRDPYIIVKARDLIKLL 123
           FPQYREKYLQDVWPTVKAALREHGI+CELNLVEGTMTVSTTRKTRDPYIIVK+RDLIKLL
Sbjct: 61  FPQYREKYLQDVWPTVKAALREHGIACELNLVEGTMTVSTTRKTRDPYIIVKSRDLIKLL 120

Query: 124 SRSVPAPQAIKILDDEMQCDIIKIGNLVRNKARFVKRRQHLLGPNNSTLKALEILTGCYI 183
           SRSVPAPQAIKILDDEMQCDIIKIGNLVRNKARFVKRRQHLLGPNNSTLKALEILTGCYI
Sbjct: 121 SRSVPAPQAIKILDDEMQCDIIKIGNLVRNKARFVKRRQHLLGPNNSTLKALEILTGCYI 180

Query: 184 LVQGNTVAAMGSFKGLKQVRRIIEDCIQNKMHPIYHIKILMMKRELAKDPALASENWDRF 243
           LVQGNTVA+MGSFKGLKQVRRI+EDCIQNKMHPIYHIKILMMK+ELAKDP L +ENWDRF
Sbjct: 181 LVQGNTVASMGSFKGLKQVRRIVEDCIQNKMHPIYHIKILMMKKELAKDPTLENENWDRF 240

Query: 244 LPQFKKKNVQKKKGKGKEKKPYTPFPPPQQPSKIDQQLETGEYFLSEEKKSAKMWQEKEV 303
           LPQFKKKNVQKKKGKGKEKKPYTPFPPPQQPSKIDQQLETGEYFLSEEKKSAK WQEKEV
Sbjct: 241 LPQFKKKNVQKKKGKGKEKKPYTPFPPPQQPSKIDQQLETGEYFLSEEKKSAKKWQEKEV 300

Query: 304 KQAEKTAENKRKRDAAFVPPEETTAEGDKSATVSKGDVSSMAQSLKKKAKEFGKKKSANH 363
           KQAEK+AENKRKR+AAF+PPEE   +G KS+T  K DV++MAQSLK+KAKE  K+K+  +
Sbjct: 301 KQAEKSAENKRKREAAFIPPEEPVMQGHKSSTDDKTDVNAMAQSLKQKAKEIVKQKNVKN 360

Query: 364 IDPQAYIAGSEA-PAKKKTKSSKS 387
           +DPQAYIAGSEA P+KKK K SKS
Sbjct: 361 LDPQAYIAGSEAPPSKKKMKKSKS 382

[Close]

BLAST of Spo06838.1 vs. NCBI nr
Match: gi|731362939|ref|XP_010693157.1| (PREDICTED: KRR1 small subunit processome component homolog [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 660.6 bits (1703), Expect = 1.700e-186
Identity = 337/384 (87.76%), Postives = 361/384 (94.01%), Query Frame = 1


		  
Query: 4   IEQQNNVDEEVVPKQRTKHKGKHDKDKPWDDPSIDHWKIEKFDPSWNDSGLLDVSSFSTI 63
           +E Q+NVDE   PKQRTKHKGKHDKDKPWDD SIDHWK+EKFDPSWN++G+L+VSSFSTI
Sbjct: 1   MEAQSNVDE--APKQRTKHKGKHDKDKPWDDSSIDHWKVEKFDPSWNETGMLEVSSFSTI 60

Query: 64  FPQYREKYLQDVWPTVKAALREHGISCELNLVEGTMTVSTTRKTRDPYIIVKARDLIKLL 123
           FPQYREKYLQDVWPTVKAALREHGISCELNLVEGTMTVSTTRKTRDPYIIVK+RDLIKLL
Sbjct: 61  FPQYREKYLQDVWPTVKAALREHGISCELNLVEGTMTVSTTRKTRDPYIIVKSRDLIKLL 120

Query: 124 SRSVPAPQAIKILDDEMQCDIIKIGNLVRNKARFVKRRQHLLGPNNSTLKALEILTGCYI 183
           SRSVPAPQAIKILDDEMQCDIIKIGNLVRNKARFVKRRQHLLGPNNSTLKALEILTGCYI
Sbjct: 121 SRSVPAPQAIKILDDEMQCDIIKIGNLVRNKARFVKRRQHLLGPNNSTLKALEILTGCYI 180

Query: 184 LVQGNTVAAMGSFKGLKQVRRIIEDCIQNKMHPIYHIKILMMKRELAKDPALASENWDRF 243
           LVQGNTVA+MGSFKGLKQVRRI+EDCIQNKMHPIYHIKILMMK+ELAKDP L +ENWDRF
Sbjct: 181 LVQGNTVASMGSFKGLKQVRRIVEDCIQNKMHPIYHIKILMMKKELAKDPTLENENWDRF 240

Query: 244 LPQFKKKNVQKKKGKGKEKKPYTPFPPPQQPSKIDQQLETGEYFLSEEKKSAKMWQEKEV 303
           LPQFKKKNVQKKKGKGKEKKPYTPFPPPQQPSKIDQQLETGEYFLSEEKKSAK WQEKEV
Sbjct: 241 LPQFKKKNVQKKKGKGKEKKPYTPFPPPQQPSKIDQQLETGEYFLSEEKKSAKKWQEKEV 300

Query: 304 KQAEKTAENKRKRDAAFVPPEETTAEGDKSATVSKGDVSSMAQSLKKKAKEFGKKKSANH 363
           KQAEK+AENKRKR+AAF+PPEE   +G KS T  K DV++MAQSLK+KAKE  K+K+  +
Sbjct: 301 KQAEKSAENKRKREAAFIPPEEPVMQGHKSTTDDKTDVNAMAQSLKQKAKEIVKQKNVKN 360

Query: 364 IDPQAYIAGSEA-PAKKKTKSSKS 387
           +DPQAYIAGSEA P+KKK K SKS
Sbjct: 361 LDPQAYIAGSEAPPSKKKMKKSKS 382

[Close]

BLAST of Spo06838.1 vs. NCBI nr
Match: gi|719981948|ref|XP_010250279.1| (PREDICTED: KRR1 small subunit processome component [Nelumbo nucifera])

HSP 1 Score: 591.3 bits (1523), Expect = 1.200e-165
Identity = 296/377 (78.51%), Postives = 341/377 (90.45%), Query Frame = 1


		  
Query: 11  DEEVVPKQRTKHKGKHDKDKPWDDPSIDHWKIEKFDPSWNDSGLLDVSSFSTIFPQYREK 70
           D E +P  +TKHKGKHDK KPWDDPSIDHWKIEKFDPSWN+ G+L+VSSFST+FPQYREK
Sbjct: 64  DGEEMP--KTKHKGKHDKPKPWDDPSIDHWKIEKFDPSWNEGGMLEVSSFSTLFPQYREK 123

Query: 71  YLQDVWPTVKAALREHGISCELNLVEGTMTVSTTRKTRDPYIIVKARDLIKLLSRSVPAP 130
           YLQ+ WP VK AL+E+G++CELNLVEG+MTVSTTRKTRDPYII+KARDLIKLLSRSVPAP
Sbjct: 124 YLQEAWPIVKGALKEYGVACELNLVEGSMTVSTTRKTRDPYIIIKARDLIKLLSRSVPAP 183

Query: 131 QAIKILDDEMQCDIIKIGNLVRNKARFVKRRQHLLGPNNSTLKALEILTGCYILVQGNTV 190
           QA+KIL+DEMQCDIIKIG L+RNK RFVKRRQHLLGPN+STLKA+EILT CY+LVQGNTV
Sbjct: 184 QAVKILNDEMQCDIIKIGGLIRNKERFVKRRQHLLGPNSSTLKAIEILTKCYVLVQGNTV 243

Query: 191 AAMGSFKGLKQVRRIIEDCIQNKMHPIYHIKILMMKRELAKDPALASENWDRFLPQFKKK 250
           AAMG FKGLKQVRRI+EDCIQNKMHP+YHIKILMMKREL K+PALA+ENWDRFLP+FKKK
Sbjct: 244 AAMGPFKGLKQVRRIVEDCIQNKMHPLYHIKILMMKRELEKNPALANENWDRFLPKFKKK 303

Query: 251 NVQKKKGKGKEKKPYTPFPPPQQPSKIDQQLETGEYFLSEEKKSAKMWQEKEVKQAEKTA 310
           NVQKKK K KEKKPYTPFPPPQQPSKID QLE+GEYFLS++KKSAK WQEK+ KQAE+TA
Sbjct: 304 NVQKKKVKAKEKKPYTPFPPPQQPSKIDLQLESGEYFLSDKKKSAKKWQEKQEKQAERTA 363

Query: 311 ENKRKRDAAFVPPEETTAEGDKSATVSKGDVSSMAQSLKKKAKEFGKKKSANHIDPQAYI 370
           ENKRKR+AAFVPP+E T E    ++  K DV++MA SLK+KAK+FGK+K+  +I+P+ YI
Sbjct: 364 ENKRKREAAFVPPKEPTREEHDKSSDEKNDVTAMAMSLKEKAKKFGKQKAVENINPETYI 423

Query: 371 AGSE-APAKKKTKSSKS 387
           A S+ AP+KKK + SKS
Sbjct: 424 ATSDKAPSKKKARHSKS 438

[Close]

BLAST of Spo06838.1 vs. NCBI nr
Match: gi|747083520|ref|XP_011089129.1| (PREDICTED: KRR1 small subunit processome component homolog [Sesamum indicum])

HSP 1 Score: 589.3 bits (1518), Expect = 4.700e-165
Identity = 300/387 (77.52%), Postives = 345/387 (89.15%), Query Frame = 1


		  
Query: 1   MADIEQQNN-VDEEVVPKQRTKHKGKHDKDKPWDDPSIDHWKIEKFDPSWNDSGLLDVSS 60
           MAD E+ +N ++ E   K RT+HKGKHDKDKPWDDPSIDHWKIE FDPSWN+SG+L+VSS
Sbjct: 1   MADSEETDNKINGETEEKPRTRHKGKHDKDKPWDDPSIDHWKIEAFDPSWNESGMLEVSS 60

Query: 61  FSTIFPQYREKYLQDVWPTVKAALREHGISCELNLVEGTMTVSTTRKTRDPYIIVKARDL 120
           FST+FPQYREKYLQ+ WP VK AL+EHG++CELNLVEG MTVSTTRKTRDPYIIVKARDL
Sbjct: 61  FSTLFPQYREKYLQECWPIVKGALKEHGVACELNLVEGCMTVSTTRKTRDPYIIVKARDL 120

Query: 121 IKLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKARFVKRRQHLLGPNNSTLKALEILT 180
           IKLLSRSVPAPQAIKIL+DEMQCDIIKIGNLVRNK RFVKRRQHL+GPN+STLKALEILT
Sbjct: 121 IKLLSRSVPAPQAIKILNDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILT 180

Query: 181 GCYILVQGNTVAAMGSFKGLKQVRRIIEDCIQNKMHPIYHIKILMMKRELAKDPALASEN 240
           GCYILVQGNTVAAMGSFKGLKQVR+++EDCI NKMHP+Y+IKILMMKRELAKDP LA+EN
Sbjct: 181 GCYILVQGNTVAAMGSFKGLKQVRKVVEDCILNKMHPVYNIKILMMKRELAKDPTLANEN 240

Query: 241 WDRFLPQFKKKNVQKKKGKGKEKKPYTPFPPPQQPSKIDQQLETGEYFLSEEKKSAKMWQ 300
           WDRFLP+FKKKNV+++K K KEKKPYTPFPPPQQPSKID QLE+GEYFLS++KK AK WQ
Sbjct: 241 WDRFLPKFKKKNVKQRKVKTKEKKPYTPFPPPQQPSKIDMQLESGEYFLSDKKKQAKKWQ 300

Query: 301 EKEVKQAEKTAENKRKRDAAFVPPEETTAEGDKSATVSKGDVSSMAQSLKKKAKEFGKKK 360
           EK+ KQAEKTAE+KR+R+ AFVPPEE T +  +++T  K DV+ +A SLK+KAKEFGK+K
Sbjct: 301 EKQEKQAEKTAESKRRREEAFVPPEELTKD-PRASTNDKNDVAQIALSLKRKAKEFGKRK 360

Query: 361 SANHIDPQAYIAGSEAPAKKKTKSSKS 387
           SA +ID + YIA SE  +  KTK  K+
Sbjct: 361 SAENIDAETYIAASEG-SSGKTKLKKN 385

[Close]

BLAST of Spo06838.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QM97_SPIOL (KRR1 small subunit processome component OS=Spinacia oleracea GN=SOVF_169610 PE=3 SV=1)

HSP 1 Score: 752.7 bits (1942), Expect = 2.300e-214
Identity = 386/386 (100.00%), Postives = 386/386 (100.00%), Query Frame = 1


		  
Query: 1   MADIEQQNNVDEEVVPKQRTKHKGKHDKDKPWDDPSIDHWKIEKFDPSWNDSGLLDVSSF 60
           MADIEQQNNVDEEVVPKQRTKHKGKHDKDKPWDDPSIDHWKIEKFDPSWNDSGLLDVSSF
Sbjct: 1   MADIEQQNNVDEEVVPKQRTKHKGKHDKDKPWDDPSIDHWKIEKFDPSWNDSGLLDVSSF 60

Query: 61  STIFPQYREKYLQDVWPTVKAALREHGISCELNLVEGTMTVSTTRKTRDPYIIVKARDLI 120
           STIFPQYREKYLQDVWPTVKAALREHGISCELNLVEGTMTVSTTRKTRDPYIIVKARDLI
Sbjct: 61  STIFPQYREKYLQDVWPTVKAALREHGISCELNLVEGTMTVSTTRKTRDPYIIVKARDLI 120

Query: 121 KLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKARFVKRRQHLLGPNNSTLKALEILTG 180
           KLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKARFVKRRQHLLGPNNSTLKALEILTG
Sbjct: 121 KLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKARFVKRRQHLLGPNNSTLKALEILTG 180

Query: 181 CYILVQGNTVAAMGSFKGLKQVRRIIEDCIQNKMHPIYHIKILMMKRELAKDPALASENW 240
           CYILVQGNTVAAMGSFKGLKQVRRIIEDCIQNKMHPIYHIKILMMKRELAKDPALASENW
Sbjct: 181 CYILVQGNTVAAMGSFKGLKQVRRIIEDCIQNKMHPIYHIKILMMKRELAKDPALASENW 240

Query: 241 DRFLPQFKKKNVQKKKGKGKEKKPYTPFPPPQQPSKIDQQLETGEYFLSEEKKSAKMWQE 300
           DRFLPQFKKKNVQKKKGKGKEKKPYTPFPPPQQPSKIDQQLETGEYFLSEEKKSAKMWQE
Sbjct: 241 DRFLPQFKKKNVQKKKGKGKEKKPYTPFPPPQQPSKIDQQLETGEYFLSEEKKSAKMWQE 300

Query: 301 KEVKQAEKTAENKRKRDAAFVPPEETTAEGDKSATVSKGDVSSMAQSLKKKAKEFGKKKS 360
           KEVKQAEKTAENKRKRDAAFVPPEETTAEGDKSATVSKGDVSSMAQSLKKKAKEFGKKKS
Sbjct: 301 KEVKQAEKTAENKRKRDAAFVPPEETTAEGDKSATVSKGDVSSMAQSLKKKAKEFGKKKS 360

Query: 361 ANHIDPQAYIAGSEAPAKKKTKSSKS 387
           ANHIDPQAYIAGSEAPAKKKTKSSKS
Sbjct: 361 ANHIDPQAYIAGSEAPAKKKTKSSKS 386

[Close]

BLAST of Spo06838.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CS22_BETVU (KRR1 small subunit processome component OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g065720 PE=3 SV=1)

HSP 1 Score: 662.9 bits (1709), Expect = 2.300e-187
Identity = 337/384 (87.76%), Postives = 363/384 (94.53%), Query Frame = 1


		  
Query: 4   IEQQNNVDEEVVPKQRTKHKGKHDKDKPWDDPSIDHWKIEKFDPSWNDSGLLDVSSFSTI 63
           +E Q+NVDE   PKQRTKHKGKHDKDKPWDDPSIDHWK+EKFDPSWN++G+L+VSSFSTI
Sbjct: 1   MEAQSNVDE--APKQRTKHKGKHDKDKPWDDPSIDHWKVEKFDPSWNETGMLEVSSFSTI 60

Query: 64  FPQYREKYLQDVWPTVKAALREHGISCELNLVEGTMTVSTTRKTRDPYIIVKARDLIKLL 123
           FPQYREKYLQDVWPTVKAALREHGI+CELNLVEGTMTVSTTRKTRDPYIIVK+RDLIKLL
Sbjct: 61  FPQYREKYLQDVWPTVKAALREHGIACELNLVEGTMTVSTTRKTRDPYIIVKSRDLIKLL 120

Query: 124 SRSVPAPQAIKILDDEMQCDIIKIGNLVRNKARFVKRRQHLLGPNNSTLKALEILTGCYI 183
           SRSVPAPQAIKILDDEMQCDIIKIGNLVRNKARFVKRRQHLLGPNNSTLKALEILTGCYI
Sbjct: 121 SRSVPAPQAIKILDDEMQCDIIKIGNLVRNKARFVKRRQHLLGPNNSTLKALEILTGCYI 180

Query: 184 LVQGNTVAAMGSFKGLKQVRRIIEDCIQNKMHPIYHIKILMMKRELAKDPALASENWDRF 243
           LVQGNTVA+MGSFKGLKQVRRI+EDCIQNKMHPIYHIKILMMK+ELAKDP L +ENWDRF
Sbjct: 181 LVQGNTVASMGSFKGLKQVRRIVEDCIQNKMHPIYHIKILMMKKELAKDPTLENENWDRF 240

Query: 244 LPQFKKKNVQKKKGKGKEKKPYTPFPPPQQPSKIDQQLETGEYFLSEEKKSAKMWQEKEV 303
           LPQFKKKNVQKKKGKGKEKKPYTPFPPPQQPSKIDQQLETGEYFLSEEKKSAK WQEKEV
Sbjct: 241 LPQFKKKNVQKKKGKGKEKKPYTPFPPPQQPSKIDQQLETGEYFLSEEKKSAKKWQEKEV 300

Query: 304 KQAEKTAENKRKRDAAFVPPEETTAEGDKSATVSKGDVSSMAQSLKKKAKEFGKKKSANH 363
           KQAEK+AENKRKR+AAF+PPEE   +G KS+T  K DV++MAQSLK+KAKE  K+K+  +
Sbjct: 301 KQAEKSAENKRKREAAFIPPEEPVMQGHKSSTDDKTDVNAMAQSLKQKAKEIVKQKNVKN 360

Query: 364 IDPQAYIAGSEA-PAKKKTKSSKS 387
           +DPQAYIAGSEA P+KKK K SKS
Sbjct: 361 LDPQAYIAGSEAPPSKKKMKKSKS 382

[Close]

BLAST of Spo06838.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BEF2_BETVU (KRR1 small subunit processome component OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g046250 PE=3 SV=1)

HSP 1 Score: 660.6 bits (1703), Expect = 1.200e-186
Identity = 337/384 (87.76%), Postives = 361/384 (94.01%), Query Frame = 1


		  
Query: 4   IEQQNNVDEEVVPKQRTKHKGKHDKDKPWDDPSIDHWKIEKFDPSWNDSGLLDVSSFSTI 63
           +E Q+NVDE   PKQRTKHKGKHDKDKPWDD SIDHWK+EKFDPSWN++G+L+VSSFSTI
Sbjct: 1   MEAQSNVDE--APKQRTKHKGKHDKDKPWDDSSIDHWKVEKFDPSWNETGMLEVSSFSTI 60

Query: 64  FPQYREKYLQDVWPTVKAALREHGISCELNLVEGTMTVSTTRKTRDPYIIVKARDLIKLL 123
           FPQYREKYLQDVWPTVKAALREHGISCELNLVEGTMTVSTTRKTRDPYIIVK+RDLIKLL
Sbjct: 61  FPQYREKYLQDVWPTVKAALREHGISCELNLVEGTMTVSTTRKTRDPYIIVKSRDLIKLL 120

Query: 124 SRSVPAPQAIKILDDEMQCDIIKIGNLVRNKARFVKRRQHLLGPNNSTLKALEILTGCYI 183
           SRSVPAPQAIKILDDEMQCDIIKIGNLVRNKARFVKRRQHLLGPNNSTLKALEILTGCYI
Sbjct: 121 SRSVPAPQAIKILDDEMQCDIIKIGNLVRNKARFVKRRQHLLGPNNSTLKALEILTGCYI 180

Query: 184 LVQGNTVAAMGSFKGLKQVRRIIEDCIQNKMHPIYHIKILMMKRELAKDPALASENWDRF 243
           LVQGNTVA+MGSFKGLKQVRRI+EDCIQNKMHPIYHIKILMMK+ELAKDP L +ENWDRF
Sbjct: 181 LVQGNTVASMGSFKGLKQVRRIVEDCIQNKMHPIYHIKILMMKKELAKDPTLENENWDRF 240

Query: 244 LPQFKKKNVQKKKGKGKEKKPYTPFPPPQQPSKIDQQLETGEYFLSEEKKSAKMWQEKEV 303
           LPQFKKKNVQKKKGKGKEKKPYTPFPPPQQPSKIDQQLETGEYFLSEEKKSAK WQEKEV
Sbjct: 241 LPQFKKKNVQKKKGKGKEKKPYTPFPPPQQPSKIDQQLETGEYFLSEEKKSAKKWQEKEV 300

Query: 304 KQAEKTAENKRKRDAAFVPPEETTAEGDKSATVSKGDVSSMAQSLKKKAKEFGKKKSANH 363
           KQAEK+AENKRKR+AAF+PPEE   +G KS T  K DV++MAQSLK+KAKE  K+K+  +
Sbjct: 301 KQAEKSAENKRKREAAFIPPEEPVMQGHKSTTDDKTDVNAMAQSLKQKAKEIVKQKNVKN 360

Query: 364 IDPQAYIAGSEA-PAKKKTKSSKS 387
           +DPQAYIAGSEA P+KKK K SKS
Sbjct: 361 LDPQAYIAGSEAPPSKKKMKKSKS 382

[Close]

BLAST of Spo06838.1 vs. UniProtKB/TrEMBL
Match: K4B7X7_SOLLC (KRR1 small subunit processome component OS=Solanum lycopersicum PE=3 SV=1)

HSP 1 Score: 588.6 bits (1516), Expect = 5.600e-165
Identity = 299/385 (77.66%), Postives = 342/385 (88.83%), Query Frame = 1


		  
Query: 1   MADIEQQNNVDEEVVPKQRTKHKGKHDKDKPWDDPSIDHWKIEKFDPSWNDSGLLDVSSF 60
           MAD E+   V+EE++PK R  HKGKHDK KPWDD SIDHWKIEKFDPSWN SGLL+VSSF
Sbjct: 1   MAD-EENLTVNEELIPKPR--HKGKHDKPKPWDDESIDHWKIEKFDPSWNQSGLLEVSSF 60

Query: 61  STIFPQYREKYLQDVWPTVKAALREHGISCELNLVEGTMTVSTTRKTRDPYIIVKARDLI 120
           ST+FPQYREKYLQ+ WPTVK AL+EHGI+CELNLVEG+MTVSTT KTRDPYIIVKARDLI
Sbjct: 61  STLFPQYREKYLQECWPTVKGALKEHGIACELNLVEGSMTVSTTMKTRDPYIIVKARDLI 120

Query: 121 KLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKARFVKRRQHLLGPNNSTLKALEILTG 180
           KLLSRSVPAPQA+KIL+DEMQCDIIKIGN+VRNK RFVKRRQ+L+GPN+STLKALEILTG
Sbjct: 121 KLLSRSVPAPQAVKILNDEMQCDIIKIGNMVRNKERFVKRRQYLVGPNSSTLKALEILTG 180

Query: 181 CYILVQGNTVAAMGSFKGLKQVRRIIEDCIQNKMHPIYHIKILMMKRELAKDPALASENW 240
           CYILVQGNTVAAMGSFKGLKQ RR+IEDCI NKMHP++HIKILM+KRELAK+PALASENW
Sbjct: 181 CYILVQGNTVAAMGSFKGLKQARRVIEDCILNKMHPLHHIKILMLKRELAKNPALASENW 240

Query: 241 DRFLPQFKKKNVQKKKGKGKEKKPYTPFPPPQQPSKIDQQLETGEYFLSEEKKSAKMWQE 300
           DRFLPQFKKKNV++KK + KEKKPYTPFPPPQ PSKIDQQLE+GEYFLS++KK AK W+E
Sbjct: 241 DRFLPQFKKKNVKQKKVQSKEKKPYTPFPPPQPPSKIDQQLESGEYFLSDKKKMAKQWEE 300

Query: 301 KEVKQAEKTAENKRKRDAAFVPPEETTAEGDKSATVSKGDVSSMAQSLKKKAKEFGKKKS 360
           K+VKQAEK AENK+KR+ AFVPPEE        + V K DV++MA SLK+KAKEF K+KS
Sbjct: 301 KQVKQAEKVAENKKKREEAFVPPEEPKTHNQDVSNVDKDDVTAMASSLKRKAKEFRKQKS 360

Query: 361 ANHIDPQAYIAGSEAPAKKKTKSSK 386
            + I+ + +IAG   P+KKK+KSS+
Sbjct: 361 IDKINAEEFIAGPSKPSKKKSKSSR 382

[Close]

BLAST of Spo06838.1 vs. UniProtKB/TrEMBL
Match: A0A0V0IFW6_SOLCH (KRR1 small subunit processome component OS=Solanum chacoense PE=3 SV=1)

HSP 1 Score: 587.8 bits (1514), Expect = 9.600e-165
Identity = 299/385 (77.66%), Postives = 341/385 (88.57%), Query Frame = 1


		  
Query: 1   MADIEQQNNVDEEVVPKQRTKHKGKHDKDKPWDDPSIDHWKIEKFDPSWNDSGLLDVSSF 60
           MAD E+   V+EE++PK R  HKGKHDK KPWDD SIDHWKIEKFDPSWN SGLL+VSSF
Sbjct: 1   MAD-EENLTVNEELIPKPR--HKGKHDKPKPWDDESIDHWKIEKFDPSWNQSGLLEVSSF 60

Query: 61  STIFPQYREKYLQDVWPTVKAALREHGISCELNLVEGTMTVSTTRKTRDPYIIVKARDLI 120
           ST+FPQYREKYLQ+ WP VK AL+EHGI+CELNLVEG+MTVSTT KTRDPYIIVKARDLI
Sbjct: 61  STLFPQYREKYLQECWPNVKGALKEHGIACELNLVEGSMTVSTTMKTRDPYIIVKARDLI 120

Query: 121 KLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKARFVKRRQHLLGPNNSTLKALEILTG 180
           KLLSRSVPAPQA+KIL+DEMQCDIIKIGN+VRNK RFVKRRQ+L+GPN+STLKALEILTG
Sbjct: 121 KLLSRSVPAPQAVKILNDEMQCDIIKIGNMVRNKERFVKRRQYLVGPNSSTLKALEILTG 180

Query: 181 CYILVQGNTVAAMGSFKGLKQVRRIIEDCIQNKMHPIYHIKILMMKRELAKDPALASENW 240
           CYILVQGNTVAAMGSFKGLKQ RR+IEDCI NKMHP++HIKILM+KRELAK+PALASENW
Sbjct: 181 CYILVQGNTVAAMGSFKGLKQARRVIEDCILNKMHPLHHIKILMLKRELAKNPALASENW 240

Query: 241 DRFLPQFKKKNVQKKKGKGKEKKPYTPFPPPQQPSKIDQQLETGEYFLSEEKKSAKMWQE 300
           DRFLPQFKKKNV++KK + KEKKPYTPFPPPQ PSKIDQQLE+GEYFLS++KK AK W+E
Sbjct: 241 DRFLPQFKKKNVKQKKVQSKEKKPYTPFPPPQPPSKIDQQLESGEYFLSDKKKMAKQWEE 300

Query: 301 KEVKQAEKTAENKRKRDAAFVPPEETTAEGDKSATVSKGDVSSMAQSLKKKAKEFGKKKS 360
           K+VKQAEK AENK+KR+ AFVPPEE        + V K DV++MA SLK+KAKEF K+KS
Sbjct: 301 KQVKQAEKVAENKKKREEAFVPPEEPKTHNQDVSNVDKDDVTAMALSLKRKAKEFRKQKS 360

Query: 361 ANHIDPQAYIAGSEAPAKKKTKSSK 386
            + ID + +IAG   P+KKK+KSS+
Sbjct: 361 IDKIDAEEFIAGPSKPSKKKSKSSR 382

[Close]

BLAST of Spo06838.1 vs. ExPASy Swiss-Prot
Match: KRR1_SCHPO (KRR1 small subunit processome component homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mis3 PE=3 SV=1)

HSP 1 Score: 379.8 bits (974), Expect = 3.600e-104
Identity = 194/324 (59.88%), Postives = 250/324 (77.16%), Query Frame = 1


		  
Query: 5   EQQNNVDEEVVPKQRTKHKGKHDKDKPWDDPSIDHWKIEKFDPSWNDSGLLDVSSFSTIF 64
           E +++ +  V+  +  +++    +DKPWD   IDHWKIE F    +    L+ SSF+T+F
Sbjct: 3   EVESSTENNVIVNKNKRYR----RDKPWDTDDIDHWKIEPFTKDDSKESFLEESSFATLF 62

Query: 65  PQYREKYLQDVWPTVKAALREHGISCELNLVEGTMTVSTTRKTRDPYIIVKARDLIKLLS 124
           P+YREKYL++VWP V  AL + GI+C L+LVEG+MTV TTRKT DPY I+ ARDLIKLL+
Sbjct: 63  PKYREKYLREVWPHVTRALDKFGITCVLDLVEGSMTVKTTRKTFDPYSILDARDLIKLLA 122

Query: 125 RSVPAPQAIKILDDEMQCDIIKIGNLVRNKARFVKRRQHLLGPNNSTLKALEILTGCYIL 184
           RSVP PQA+KI+ D + CDIIKIGN++RNK RFVKRRQ L+G N  TLKALE+LT CYIL
Sbjct: 123 RSVPFPQAVKIMQDGVACDIIKIGNILRNKERFVKRRQRLIGTNGQTLKALELLTQCYIL 182

Query: 185 VQGNTVAAMGSFKGLKQVRRIIEDCIQNKMHPIYHIKILMMKRELAKDPALASENWDRFL 244
           VQG TVA MG +KGLK+VRRI+EDC+ N +HPIYHIK LM+KRELAKDP LA+E+WDRFL
Sbjct: 183 VQGTTVAVMGGYKGLKEVRRIVEDCMHN-IHPIYHIKELMIKRELAKDPTLANESWDRFL 242

Query: 245 PQFKKKNVQKKK-GKGKEKKPYTPFPPPQQPSKIDQQLETGEYFLSEEKKSAKMWQEKEV 304
           PQFKK+NV ++K  K +E K YTPFPP Q PSK+D ++E+GEYFL +E+K  K   EK+ 
Sbjct: 243 PQFKKRNVARRKPAKIRETKEYTPFPPAQPPSKLDLEIESGEYFLKKEEKERKKRAEKKE 302

Query: 305 KQAEKTAENKRKRDAAFVPPEETT 328
           +Q EK  E +++R  AF+PPEE++
Sbjct: 303 QQKEKKKEKEKERMKAFIPPEESS 321

[Close]

BLAST of Spo06838.1 vs. ExPASy Swiss-Prot
Match: KRR1_YEAS8 (KRR1 small subunit processome component OS=Saccharomyces cerevisiae (strain Lalvin EC1118 / Prise de mousse) GN=KRR1 PE=3 SV=1)

HSP 1 Score: 367.9 bits (943), Expect = 1.400e-100
Identity = 190/305 (62.30%), Postives = 234/305 (76.72%), Query Frame = 1


		  
Query: 26  HDKDKPWDDPSIDHWKIEKFDPSWNDSG--LLDVSSFSTIFPQYREKYLQDVWPTVKAAL 85
           H++DKPWD   ID WKIE+F    N SG    + SSF T+FP+YRE YL+ +W  V  AL
Sbjct: 5   HNRDKPWDTDDIDKWKIEEFKEEDNASGQPFAEESSFMTLFPKYRESYLKTIWNDVTRAL 64

Query: 86  REHGISCELNLVEGTMTVSTTRKTRDPYIIVKARDLIKLLSRSVPAPQAIKILDDEMQCD 145
            +H I+C L+LVEG+MTV TTRKT DP II+KARDLIKLL+RSVP PQA+KIL D+M CD
Sbjct: 65  DKHNIACVLDLVEGSMTVKTTRKTYDPAIILKARDLIKLLARSVPFPQAVKILQDDMACD 124

Query: 146 IIKIGNLVRNKARFVKRRQHLLGPNNSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVR 205
           +IKIGN V NK RFVKRRQ L+GPN +TLKALE+LT CYILVQGNTV+AMG FKGLK+VR
Sbjct: 125 VIKIGNFVTNKERFVKRRQRLVGPNGNTLKALELLTKCYILVQGNTVSAMGPFKGLKEVR 184

Query: 206 RIIEDCIQNKMHPIYHIKILMMKRELAKDPALASENWDRFLPQFKKKNVQKKKGK---GK 265
           R++EDC++N +HPIYHIK LM+KRELAK P LA+E+W RFLP FKK+NV +KK K     
Sbjct: 185 RVVEDCMKN-IHPIYHIKELMIKRELAKRPELANEDWSRFLPMFKKRNVARKKPKKIRNV 244

Query: 266 EKKPYTPFPPPQQPSKIDQQLETGEYFLSEEKKSAKMWQEKEVKQAEKTAENKRKRDAAF 325
           EKK YTPFPP Q P K+D ++E+GEYFLS+ +K  K   E++ KQ E+  E + +R   F
Sbjct: 245 EKKVYTPFPPAQLPRKVDLEIESGEYFLSKREKQMKKLNEQKEKQMEREIERQEERAKDF 304

[Close]

BLAST of Spo06838.1 vs. ExPASy Swiss-Prot
Match: KRR1_YEAS1 (KRR1 small subunit processome component OS=Saccharomyces cerevisiae (strain RM11-1a) GN=KRR1 PE=3 SV=1)

HSP 1 Score: 367.9 bits (943), Expect = 1.400e-100
Identity = 190/305 (62.30%), Postives = 234/305 (76.72%), Query Frame = 1


		  
Query: 26  HDKDKPWDDPSIDHWKIEKFDPSWNDSG--LLDVSSFSTIFPQYREKYLQDVWPTVKAAL 85
           H++DKPWD   ID WKIE+F    N SG    + SSF T+FP+YRE YL+ +W  V  AL
Sbjct: 5   HNRDKPWDTDDIDKWKIEEFKEEDNASGQPFAEESSFMTLFPKYRESYLKTIWNDVTRAL 64

Query: 86  REHGISCELNLVEGTMTVSTTRKTRDPYIIVKARDLIKLLSRSVPAPQAIKILDDEMQCD 145
            +H I+C L+LVEG+MTV TTRKT DP II+KARDLIKLL+RSVP PQA+KIL D+M CD
Sbjct: 65  DKHNIACVLDLVEGSMTVKTTRKTYDPAIILKARDLIKLLARSVPFPQAVKILQDDMACD 124

Query: 146 IIKIGNLVRNKARFVKRRQHLLGPNNSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVR 205
           +IKIGN V NK RFVKRRQ L+GPN +TLKALE+LT CYILVQGNTV+AMG FKGLK+VR
Sbjct: 125 VIKIGNFVTNKERFVKRRQRLVGPNGNTLKALELLTKCYILVQGNTVSAMGPFKGLKEVR 184

Query: 206 RIIEDCIQNKMHPIYHIKILMMKRELAKDPALASENWDRFLPQFKKKNVQKKKGK---GK 265
           R++EDC++N +HPIYHIK LM+KRELAK P LA+E+W RFLP FKK+NV +KK K     
Sbjct: 185 RVVEDCMKN-IHPIYHIKELMIKRELAKRPELANEDWSRFLPMFKKRNVARKKPKKIRNV 244

Query: 266 EKKPYTPFPPPQQPSKIDQQLETGEYFLSEEKKSAKMWQEKEVKQAEKTAENKRKRDAAF 325
           EKK YTPFPP Q P K+D ++E+GEYFLS+ +K  K   E++ KQ E+  E + +R   F
Sbjct: 245 EKKVYTPFPPAQLPRKVDLEIESGEYFLSKREKQMKKLNEQKEKQMEREIERQEERAKDF 304

[Close]

BLAST of Spo06838.1 vs. ExPASy Swiss-Prot
Match: KRR1_YEAS6 (KRR1 small subunit processome component OS=Saccharomyces cerevisiae (strain AWRI1631) GN=KRR1 PE=3 SV=1)

HSP 1 Score: 367.9 bits (943), Expect = 1.400e-100
Identity = 190/305 (62.30%), Postives = 234/305 (76.72%), Query Frame = 1


		  
Query: 26  HDKDKPWDDPSIDHWKIEKFDPSWNDSG--LLDVSSFSTIFPQYREKYLQDVWPTVKAAL 85
           H++DKPWD   ID WKIE+F    N SG    + SSF T+FP+YRE YL+ +W  V  AL
Sbjct: 5   HNRDKPWDTDDIDKWKIEEFKEEDNASGQPFAEESSFMTLFPKYRESYLKTIWNDVTRAL 64

Query: 86  REHGISCELNLVEGTMTVSTTRKTRDPYIIVKARDLIKLLSRSVPAPQAIKILDDEMQCD 145
            +H I+C L+LVEG+MTV TTRKT DP II+KARDLIKLL+RSVP PQA+KIL D+M CD
Sbjct: 65  DKHNIACVLDLVEGSMTVKTTRKTYDPAIILKARDLIKLLARSVPFPQAVKILQDDMACD 124

Query: 146 IIKIGNLVRNKARFVKRRQHLLGPNNSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVR 205
           +IKIGN V NK RFVKRRQ L+GPN +TLKALE+LT CYILVQGNTV+AMG FKGLK+VR
Sbjct: 125 VIKIGNFVTNKERFVKRRQRLVGPNGNTLKALELLTKCYILVQGNTVSAMGPFKGLKEVR 184

Query: 206 RIIEDCIQNKMHPIYHIKILMMKRELAKDPALASENWDRFLPQFKKKNVQKKKGK---GK 265
           R++EDC++N +HPIYHIK LM+KRELAK P LA+E+W RFLP FKK+NV +KK K     
Sbjct: 185 RVVEDCMKN-IHPIYHIKELMIKRELAKRPELANEDWSRFLPMFKKRNVARKKPKKIRNV 244

Query: 266 EKKPYTPFPPPQQPSKIDQQLETGEYFLSEEKKSAKMWQEKEVKQAEKTAENKRKRDAAF 325
           EKK YTPFPP Q P K+D ++E+GEYFLS+ +K  K   E++ KQ E+  E + +R   F
Sbjct: 245 EKKVYTPFPPAQLPRKVDLEIESGEYFLSKREKQMKKLNEQKEKQMEREIERQEERAKDF 304

[Close]

BLAST of Spo06838.1 vs. ExPASy Swiss-Prot
Match: KRR1_YEAST (KRR1 small subunit processome component OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=KRR1 PE=1 SV=1)

HSP 1 Score: 367.9 bits (943), Expect = 1.400e-100
Identity = 190/305 (62.30%), Postives = 234/305 (76.72%), Query Frame = 1


		  
Query: 26  HDKDKPWDDPSIDHWKIEKFDPSWNDSG--LLDVSSFSTIFPQYREKYLQDVWPTVKAAL 85
           H++DKPWD   ID WKIE+F    N SG    + SSF T+FP+YRE YL+ +W  V  AL
Sbjct: 5   HNRDKPWDTDDIDKWKIEEFKEEDNASGQPFAEESSFMTLFPKYRESYLKTIWNDVTRAL 64

Query: 86  REHGISCELNLVEGTMTVSTTRKTRDPYIIVKARDLIKLLSRSVPAPQAIKILDDEMQCD 145
            +H I+C L+LVEG+MTV TTRKT DP II+KARDLIKLL+RSVP PQA+KIL D+M CD
Sbjct: 65  DKHNIACVLDLVEGSMTVKTTRKTYDPAIILKARDLIKLLARSVPFPQAVKILQDDMACD 124

Query: 146 IIKIGNLVRNKARFVKRRQHLLGPNNSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVR 205
           +IKIGN V NK RFVKRRQ L+GPN +TLKALE+LT CYILVQGNTV+AMG FKGLK+VR
Sbjct: 125 VIKIGNFVTNKERFVKRRQRLVGPNGNTLKALELLTKCYILVQGNTVSAMGPFKGLKEVR 184

Query: 206 RIIEDCIQNKMHPIYHIKILMMKRELAKDPALASENWDRFLPQFKKKNVQKKKGK---GK 265
           R++EDC++N +HPIYHIK LM+KRELAK P LA+E+W RFLP FKK+NV +KK K     
Sbjct: 185 RVVEDCMKN-IHPIYHIKELMIKRELAKRPELANEDWSRFLPMFKKRNVARKKPKKIRNV 244

Query: 266 EKKPYTPFPPPQQPSKIDQQLETGEYFLSEEKKSAKMWQEKEVKQAEKTAENKRKRDAAF 325
           EKK YTPFPP Q P K+D ++E+GEYFLS+ +K  K   E++ KQ E+  E + +R   F
Sbjct: 245 EKKVYTPFPPAQLPRKVDLEIESGEYFLSKREKQMKKLNEQKEKQMEREIERQEERAKDF 304

[Close]

BLAST of Spo06838.1 vs. TAIR (Arabidopsis)
Match: AT5G08420.1 (RNA-binding KH domain-containing protein)

HSP 1 Score: 518.8 bits (1335), Expect = 2.800e-147
Identity = 265/390 (67.95%), Postives = 326/390 (83.59%), Query Frame = 1


		  
Query: 1   MADIEQQNNVDEEVVPKQRTKHKGKHDKDKPWDD-PSIDHWKIEKFDPSWNDSGLLDVSS 60
           MA++E+  + ++ +  ++R K KGKH+K KPWDD P+ID W IEKFDP+WN +G+ + S+
Sbjct: 1   MAEVEEIAHEEQNI--EKREKKKGKHEKPKPWDDDPNIDRWTIEKFDPAWNPTGMTETST 60

Query: 61  FSTIFPQYREKYLQDVWPTVKAALREHGISCELNLVEGTMTVSTTRKTRDPYIIVKARDL 120
           FST+FPQYREKYLQ+ WP V++AL+E+G++C+LNLVEG+MTVSTTRKTRDPYIIVKARDL
Sbjct: 61  FSTLFPQYREKYLQECWPRVESALKEYGVACKLNLVEGSMTVSTTRKTRDPYIIVKARDL 120

Query: 121 IKLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKARFVKRRQHLLGPNNSTLKALEILT 180
           IKLLSRSVPAPQAIKIL+DE+QCDIIKIGNLVRNK RFVKRRQ L+GPN+STLKALEILT
Sbjct: 121 IKLLSRSVPAPQAIKILEDEVQCDIIKIGNLVRNKERFVKRRQRLVGPNSSTLKALEILT 180

Query: 181 GCYILVQGNTVAAMGSFKGLKQVRRIIEDCIQNKMHPIYHIKILMMKRELAKDPALASEN 240
            CYILVQG+TVAAMG FKGLKQ+RRI+EDC+QN MHP+YHIK LMMK+EL KDPALA+E+
Sbjct: 181 NCYILVQGSTVAAMGPFKGLKQLRRIVEDCVQNIMHPVYHIKTLMMKKELEKDPALANES 240

Query: 241 WDRFLPQFKKKNVQKKKGKGKEKKPYTPFPPPQQPSKIDQQLETGEYFLSEEKKSAKMWQ 300
           WDRFLP F+KKNV++KK K KEKKPYTPFPPPQ PSKID QLE+GEYF+S++KKS K WQ
Sbjct: 241 WDRFLPTFRKKNVKQKKPKSKEKKPYTPFPPPQPPSKIDMQLESGEYFMSDKKKSEKKWQ 300

Query: 301 EKEVKQAEKTAENKRKRDAAFVPPEE---TTAEGDKSATVSKGDVSSMAQSLKKKAKEFG 360
           EK+ KQ+EK+ ENKRKRDA+F+PPEE     +  +KS    K D++ +  SLK K KE  
Sbjct: 301 EKQEKQSEKSTENKRKRDASFLPPEEPMNNNSNANKSED-GKNDITELTNSLKSKTKELK 360

Query: 361 K-KKSANHIDPQAYIAGSEAPAKKKTKSSK 386
           K KK+   ++ + YIAG  + A K +K SK
Sbjct: 361 KQKKTHERVNAEEYIAGPSSSADKSSKKSK 387

The following BLAST results are available for this feature:

BLAST of Spo06838.1 vs. NCBI nr
BLAST of Spo06838.1 vs. UniProtKB/TrEMBL
BLAST of Spo06838.1 vs. ExPASy Swiss-Prot
BLAST of Spo06838.1 vs. TAIR (Arabidopsis)

BLAST of Spo06838.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902169634\|gb\|KNA07686.1\|	3.2e-214	100.	hypothetical protein SOVF_1696...	[more]
gi\|731325237\|ref\|XP_010673406.1\|	3.4e-187	87.7	PREDICTED: KRR1 small subunit ...	[more]
gi\|731362939\|ref\|XP_010693157.1\|	1.7e-186	87.7	PREDICTED: KRR1 small subunit ...	[more]
gi\|719981948\|ref\|XP_010250279.1\|	1.2e-165	78.5	PREDICTED: KRR1 small subunit ...	[more]
gi\|747083520\|ref\|XP_011089129.1\|	4.7e-165	77.5	PREDICTED: KRR1 small subunit ...	[more]

BLAST of Spo06838.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9QM97_SPIOL	2.3e-214	100.	KRR1 small subunit processome ...	[more]
A0A0J8CS22_BETVU	2.3e-187	87.7	KRR1 small subunit processome ...	[more]
A0A0J8BEF2_BETVU	1.2e-186	87.7	KRR1 small subunit processome ...	[more]
K4B7X7_SOLLC	5.6e-165	77.6	KRR1 small subunit processome ...	[more]
A0A0V0IFW6_SOLCH	9.6e-165	77.6	KRR1 small subunit processome ...	[more]

BLAST of Spo06838.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5


Match Name	E-value	Identity	Description
KRR1_SCHPO	3.6e-104	59.8	KRR1 small subunit processome ...	[more]
KRR1_YEAS8	1.4e-100	62.3	KRR1 small subunit processome ...	[more]
KRR1_YEAS1	1.4e-100	62.3	KRR1 small subunit processome ...	[more]
KRR1_YEAS6	1.4e-100	62.3	KRR1 small subunit processome ...	[more]
KRR1_YEAST	1.4e-100	62.3	KRR1 small subunit processome ...	[more]

BLAST of Spo06838.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1


Match Name	E-value	Identity	Description
AT5G08420.1	2.8e-147	67.9	RNA-binding KH domain-containi...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004087	K Homology domain	SMART	SM00322	kh_6	coord: 141..211 score: 0.
IPR004088	K Homology domain, type 1	GENE3D	3.30.1370.10		coord: 139..215 score: 1.
IPR004088	K Homology domain, type 1	unknown	SSF54791	Eukaryotic type KH-domain (KH-domain type I)	coord: 139..244 score: 9.81
IPR024166	Ribosomal RNA assembly KRR1	PIR	PIRSF006515	KRR1	coord: 5..362 score: 2.7E
IPR024166	Ribosomal RNA assembly KRR1	PANTHER	PTHR12581	HIV-1 REV BINDING PROTEIN 2, 3	coord: 5..386 score: 1.3E
None	No IPR available	unknown	Coil	Coil	coord: 296..316 scor

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006364	rRNA processing
cellular_component	GO:0005730	nucleolus
cellular_component	GO:1990904	ribonucleoprotein complex
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003723	RNA binding