Spo06876.1 (mRNA) | SpinachBase

Overview


Name	Spo06876.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	Electron transfer flavoprotein subunit alpha, mitochondrial
Location	SpoScf_01844 : 51368 .. 54308 (+)
Sequence length	992

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GGGTCTCTTTGATATGCGAGATCTAATATCCTAAATAACGGGTCTCTAATATGCATTTGAGCCCACTAGTATACCGTGTGAAAAAGAAAATCAGAGATAACAGACCCCTTATGTCTGTCTACGGGTCTCAAGTCACATTAGGGCCCACCAATTTTTCGCTTCAAAAAAATATGCGAGACCCCTTAACTGGATACACGGGTCTCTTATCTCAACCAAAACTAAAAATAAATAAAATTTAGGTGACCATCCTCCCTTTCATAGTTTCGTTGCACACAATGACACAATCTCTCTCCTCAAGACTCAAATCATTTTGAGTTTCCATCTCCTTCTCTCTCTCTTTGTAGAAACTGCAACTATGGTTTATATCTTTCATCCTCTATTTCTCTTCCTCTCTCTTCTCTCTTCATATTTCACTAATCTAATTTAAATGACCTGTAACATTAGATCAATTGCGTTGGAAAATGGATGAATCGCAATGGCTATTCAAACACCGATTGCTGTCTCTCTTCCATCCAACAATCCCTGCCTTCGTTGGTATGTTTTCTACTTCGGGTTTTAAAAAATTAGGGTTTTTGTATGAGCAGTAAAGTTAGGTTTTCTAATTAGGACAAATAGGTTGTTATTGTTTGTTTATTGAGTAGGGATTTGAATGTTGTTAATTTCTTGGATTCTAAGGATTGTAGATGATTTATTTGATTGTTATTAAGTAATGGAATTTATATTATTTGAGTTGCACACCAAGTGTTTGATGAAATGCCCAATTATTTTTTGTATGTTTGATAATTTTGGATATCCAATATATGAACCACCGTGTTGGTCCTCTTTGCTCTTTGCTCTTTGCTCTCTGCCAATTTCCTTCTATGACTCACCAACGACAAATCAAGTTTTTTTAGTTTGTATTTTTTGAGTTGTCGACTCTATGGTTTTAAATTCAATTAGTTGAATTGTGAAAATATAGGTATGAGAAAGATAAGATGAAATGGATTATTACAATTGTGCTAGCTGGAAATTCTAGAATGCTTGAGCAATTGCGTACGTGTTGGCTTAAAGAGCATTGACAAAACGAAAGAGGTATCTTCATAATTTCCAAATTTGCACAAGGTCAAGTAATGATACAACTCAAGCGAACCAATTCACAATTTCATTGAATGGGTTTTACCATTTTTATATACTTGGTTGAATTAGTTTTAGATACAATAAATGAATTGTGACACAAAAATAGAATTGTTTATAATTAGTTGTCTACTGTATTGTCAAATTTCTATTAGAGCAGGAGTAATCAAATATTTTGTAAACCGAGTTTTTGACTATGCTGTGATTGGAAATATATATTGTTTCATTGTTATAGGGATGTAGTAGTATCGTTTCTATGAGTAGTTTTATTTTCTTGTATTATCAACTTATTATTGCCTTATGAGTGCCTACTTACGACAATTTATGCATTCTGATCCATTAAATATTTATATATCTTGCCTTATAGTTAAAATTTCTGTAAGCTCATATTTTGGTTCTTATTTGCAGAAACTCTGGAGAAACCTAGATTTGTAAAGCTTAGCTCTCATAATTGAGTGCCCTGATCTTGGAAATGCACGCATTGTAGTGACTGGAGGTTGAGGTTTAAACAGTTCCGAGAACTTCAAGATGATGGAGAAGCTGGCTGAGAAACTTGATATAAATGCATAAATCTGGTAATTGTTATGGAGAAAGTTGGTGGTCGAGGTTTAAAAACTTCCAGGAATTTCAAGATGATCGAGAAGCTTACTGGGAAACTTGATGCAGCAGGTAGTTTAAAACATTTATTCAACTTGACAGCATAAGTATAGTAATTATTATATACATAGATAGTTTTGGTGTCACGTGCTTGAATCGAGTATAATACATTTGTCCCCTTTTAAATCTGTTTTCCCTCTTGAGTTCAATACTTGACTATACCCTGTTTGCTGCCTTTTTCTAGTTAAAGCTTTACGTGGTGTTGTTCTTGCGGGATACATTTCCAATGAACTACAGGTAATTTAATGCCTCTAATTGTGCTTGTAGATTGCTTGATCTAAATTATGTTAATATGGTCTGCCTATTTCATTAGTCCTATGTTAAATCTCCCAGCTTCACTTTGAAAGGGTGTAGCAGCTATATATGAACAAAATGATTTAATGTTCATAAGCCTCTTGTCTTTGTAAGGATATCTAAAGTTGATATGACTACCTATGTCATGGCATTAGGTAATAAGTGTAGTAGCTGGAACTCAATACATCCGAGTTTCCAATTAAAAAAGGTCACTAAAATAATTCCTTAAAACAAACTCATTTATATATCCGTTTAAGTTTCTTACCCTCCAAAAACGAGAAAGCTACATTATAAAGTTTTTTTATGTTTTTTTGTCAGCCAAATCAACACAATTCGTTTTTTTAGTCCGTGCTTGTCTACTCGATAGTTTACCAATGAACAAAGTGTACAAGTTAATATGAAATGCTCAATTCCAGTTGGAGATTGTTTTGACTTATCTTTTTGAGTTGTTTTCTTTTCATCTTAGTATTGCATTCTATTGTTGGTATGCATGCAATCGACCACACTTTTGCATCTAGGTAGGAAATTTTGTTGTATATTTATTGAAAATTTGGCTCACTCTTTGCTTGCATATTTTTTTGTAGTCTGAAACCAAGCATGCTCTGGGTAATAGTCGGATGAATGAGCCCCTGGTTGCTCGCTCGTGCCTGTTTGGTCTTATGCTTGTTTGGAAGAGCTTCTCGGATATCGAAGTACGAGATGCGTTGCTCTGTATTGAAAAACTTTTTTTTGTTTTACTCAAGGTGCTTGTGCCCACATTAGTAATATGCATTACTGTCGCTTTAGGATCTTGTCACAGTTATGCAGACCTTAGAGTTTTTTTTCTACTTTTTTTTTAAAGAATAATGTAAGATTTTCTTTTTTGTTAATAGTATGA

mRNA sequence

GGGTCTCTTTGATATGCGAGATCTAATATCCTAAATAACGGGTCTCTAATATGCATTTGAGCCCACTAGTATACCGTGTGAAAAAGAAAATCAGAGATAACAGACCCCTTATGTCTGTCTACGGGTCTCAAGTCACATTAGGGCCCACCAATTTTTCGCTTCAAAAAAATATGCGAGACCCCTTAACTGGATACACGGGTCTCTTATCTCAACCAAAACTAAAAATAAATAAAATTTAGGTGACCATCCTCCCTTTCATAGTTTCGTTGCACACAATGACACAATCTCTCTCCTCAAGACTCAAATCATTTTGAGTTTCCATCTCCTTCTCTCTCTCTTTGTAGAAACTGCAACTATGGTTTATATCTTTCATCCTCTATTTCTCTTCCTCTCTCTTCTCTCTTCATATTTCACTAATCTAATTTAAATGACCTGTAACATTAGATCAATTGCGTTGGAAAATGGATGAATCGCAATGGCTATTCAAACACCGATTGCTGTCTCTCTTCCATCCAACAATCCCTGCCTTCGTTGAAACTCTGGAGAAACCTAGATTTGTAAAGCTTAGCTCTCATAATTGAGTGCCCTGATCTTGGAAATGCACGCATTGTAGTGACTGGAGGTTGAGGTTTAAACAGTTCCGAGAACTTCAAGATGATGGAGAAGCTGGCTGAGAAACTTGATATAAATGCATAAATCTGGTAATTGTTATGGAGAAAGTTGGTGGTCGAGGTTTAAAAACTTCCAGGAATTTCAAGATGATCGAGAAGCTTACTGGGAAACTTGATGCAGCAGTTAAAGCTTTACGTGGTGTTGTTCTTGCGGGATACATTTCCAATGAACTACAGTCTGAAACCAAGCATGCTCTGGGTAATAGTCGGATGAATGAGCCCCTGGTTGCTCGCTCGTGCCTGTTTGGTCTTATGCTTGTTTGGAAGAGCTTCTCGGATATCGAAAATAATGTAAGATTTTCTTTTTTGTTAATAGTATGA

Coding sequence (CDS)

ATGGAGAAAGTTGGTGGTCGAGGTTTAAAAACTTCCAGGAATTTCAAGATGATCGAGAAGCTTACTGGGAAACTTGATGCAGCAGTTAAAGCTTTACGTGGTGTTGTTCTTGCGGGATACATTTCCAATGAACTACAGTCTGAAACCAAGCATGCTCTGGGTAATAGTCGGATGAATGAGCCCCTGGTTGCTCGCTCGTGCCTGTTTGGTCTTATGCTTGTTTGGAAGAGCTTCTCGGATATCGAAAATAATGTAAGATTTTCTTTTTTGTTAATAGTATGA

Protein sequence

MEKVGGRGLKTSRNFKMIEKLTGKLDAAVKALRGVVLAGYISNELQSETKHALGNSRMNEPLVARSCLFGLMLVWKSFSDIENNVRFSFLLIV

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo06876	Spo06876	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo06876.1	Spo06876.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo06876.1.exon.1	Spo06876.1.exon.1	exon
Spo06876.1.exon.2	Spo06876.1.exon.2	exon
Spo06876.1.exon.3	Spo06876.1.exon.3	exon
Spo06876.1.exon.4	Spo06876.1.exon.4	exon
Spo06876.1.exon.5	Spo06876.1.exon.5	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo06876.1.utr5p.1	Spo06876.1.utr5p.1	five_prime_UTR
Spo06876.1.utr5p.2	Spo06876.1.utr5p.2	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo06876.1.CDS.1	Spo06876.1.CDS.1	CDS
Spo06876.1.CDS.2	Spo06876.1.CDS.2	CDS
Spo06876.1.CDS.3	Spo06876.1.CDS.3	CDS
Spo06876.1.CDS.4	Spo06876.1.CDS.4	CDS

Homology

[Close]

BLAST of Spo06876.1 vs. NCBI nr
Match: gi|902167834|gb|KNA07425.1| (hypothetical protein SOVF_172030 [Spinacia oleracea])

HSP 1 Score: 58.2 bits (139), Expect = 9.200e-6
Identity = 30/42 (71.43%), Postives = 33/42 (78.57%), Query Frame = 1

		  
Query: 5   GGRGLKTSRNFKMIEKLTGKLDAAVKALRGVVLAGYISNELQ 47
           GGRGLK++ NFKMIEKL  KLDAAV A R  V AG+I NELQ
Sbjct: 240 GGRGLKSAENFKMIEKLAEKLDAAVGATRAAVDAGFIPNELQ 281

[Close]

BLAST of Spo06876.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QJJ0_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_172030 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 6.400e-6
Identity = 30/42 (71.43%), Postives = 33/42 (78.57%), Query Frame = 1

		  
Query: 5   GGRGLKTSRNFKMIEKLTGKLDAAVKALRGVVLAGYISNELQ 47
           GGRGLK++ NFKMIEKL  KLDAAV A R  V AG+I NELQ
Sbjct: 240 GGRGLKSAENFKMIEKLAEKLDAAVGATRAAVDAGFIPNELQ 281

[Close]

BLAST of Spo06876.1 vs. ExPASy Swiss-Prot
Match: ETFA_ORYSJ (Electron transfer flavoprotein subunit alpha, mitochondrial OS=Oryza sativa subsp. japonica GN=ETFA PE=2 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 7.000e-6
Identity = 25/42 (59.52%), Postives = 32/42 (76.19%), Query Frame = 1

		  
Query: 5   GGRGLKTSRNFKMIEKLTGKLDAAVKALRGVVLAGYISNELQ 47
           GGRGLK++ NFK++E+L  KL AAV A R  V AG++ NELQ
Sbjct: 245 GGRGLKSAENFKVLEQLAEKLGAAVGATRAAVDAGFVPNELQ 286

[Close]

BLAST of Spo06876.1 vs. ExPASy Swiss-Prot
Match: ETFA_ORYSI (Electron transfer flavoprotein subunit alpha, mitochondrial OS=Oryza sativa subsp. indica GN=ETFA PE=3 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 7.000e-6
Identity = 25/42 (59.52%), Postives = 32/42 (76.19%), Query Frame = 1

		  
Query: 5   GGRGLKTSRNFKMIEKLTGKLDAAVKALRGVVLAGYISNELQ 47
           GGRGLK++ NFK++E+L  KL AAV A R  V AG++ NELQ
Sbjct: 245 GGRGLKSAENFKVLEQLAEKLGAAVGATRAAVDAGFVPNELQ 286

[Close]

BLAST of Spo06876.1 vs. TAIR (Arabidopsis)
Match: AT1G50940.1 (electron transfer flavoprotein alpha)

HSP 1 Score: 50.4 bits (119), Expect = 6.700e-7
Identity = 26/42 (61.90%), Postives = 29/42 (69.05%), Query Frame = 1

		  
Query: 5   GGRGLKTSRNFKMIEKLTGKLDAAVKALRGVVLAGYISNELQ 47
           GGR LK+  NFKMIEKL  KL  AV A R  V AGY+ N+LQ
Sbjct: 250 GGRALKSVENFKMIEKLAEKLGGAVGATRAAVDAGYVPNDLQ 291

The following BLAST results are available for this feature:

BLAST of Spo06876.1 vs. NCBI nr
BLAST of Spo06876.1 vs. UniProtKB/TrEMBL
BLAST of Spo06876.1 vs. ExPASy Swiss-Prot
BLAST of Spo06876.1 vs. TAIR (Arabidopsis)

BLAST of Spo06876.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 1

Position :

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x 1


Match Name	E-value	Identity	Description
gi\|902167834\|gb\|KNA07425.1\|	9.2e-6	71.4	hypothetical protein SOVF_1720...	[more]

BLAST of Spo06876.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 1

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
A0A0K9QJJ0_SPIOL	6.4e-6	71.4	Uncharacterized protein OS=Spi...	[more]

BLAST of Spo06876.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 2

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
ETFA_ORYSJ	7.0e-6	59.5	Electron transfer flavoprotein...	[more]
ETFA_ORYSI	7.0e-6	59.5	Electron transfer flavoprotein...	[more]

BLAST of Spo06876.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
AT1G50940.1	6.7e-7	61.9	electron transfer flavoprotein...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014731	Electron transfer flavoprotein, alpha subunit, C-terminal	PFAM	PF00766	ETF_alpha	coord: 5..46 score: 7.

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0043167	ion binding