Spo06953.1 (mRNA) | SpinachBase

Overview


Name	Spo06953.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	Peroxiredoxin Q, chloroplastic
Location	chr5 : 52991925 .. 52992422 (-)
Sequence length	498

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAATCTATCCCAAACCCAAAATCCTCATCTTTCAATAACTTTTCTTCATATGATTCCCCTGCATTTCTAAGACATGGAAACCCCAATTCCCTTTCCCTTTCCGCAAAAAACAAATACTGGGTGATACAATCACAGAGCAAGGAACAAGAAGAAGGAATCGATGAAGAGTTGAAAAAACGTTTACTGGTGTTCAGTGGAGCTACTTCAATTGGGATTTTGCTGATGATGATGGGCCAAGATAAGGCATGGGCTTTAGGCCCAGAAGGTCCATTAATGGAGGAATTCTGGGAGAATGTAAGAAGGTATGCATTGTATGCACTTACTGTAAGTACTGGGGTTCTTTATGCAGTTTTACAGCCTATTTTTGAGCTGCTTAAGAACCCAATCTCTGCAGTTCTGGTTGTCATTGTCATAGGTGGCTCCTTTTTCATCGTTTCTCAAATTGTTTCTGCTATGGTTGGCGTCTCCGATTTCTCTTATCAATACGCTTATTAG

mRNA sequence

ATGAAATCTATCCCAAACCCAAAATCCTCATCTTTCAATAACTTTTCTTCATATGATTCCCCTGCATTTCTAAGACATGGAAACCCCAATTCCCTTTCCCTTTCCGCAAAAAACAAATACTGGGTGATACAATCACAGAGCAAGGAACAAGAAGAAGGAATCGATGAAGAGTTGAAAAAACGTTTACTGGTGTTCAGTGGAGCTACTTCAATTGGGATTTTGCTGATGATGATGGGCCAAGATAAGGCATGGGCTTTAGGCCCAGAAGGTCCATTAATGGAGGAATTCTGGGAGAATGTAAGAAGGTATGCATTGTATGCACTTACTGTAAGTACTGGGGTTCTTTATGCAGTTTTACAGCCTATTTTTGAGCTGCTTAAGAACCCAATCTCTGCAGTTCTGGTTGTCATTGTCATAGGTGGCTCCTTTTTCATCGTTTCTCAAATTGTTTCTGCTATGGTTGGCGTCTCCGATTTCTCTTATCAATACGCTTATTAG

Coding sequence (CDS)

ATGAAATCTATCCCAAACCCAAAATCCTCATCTTTCAATAACTTTTCTTCATATGATTCCCCTGCATTTCTAAGACATGGAAACCCCAATTCCCTTTCCCTTTCCGCAAAAAACAAATACTGGGTGATACAATCACAGAGCAAGGAACAAGAAGAAGGAATCGATGAAGAGTTGAAAAAACGTTTACTGGTGTTCAGTGGAGCTACTTCAATTGGGATTTTGCTGATGATGATGGGCCAAGATAAGGCATGGGCTTTAGGCCCAGAAGGTCCATTAATGGAGGAATTCTGGGAGAATGTAAGAAGGTATGCATTGTATGCACTTACTGTAAGTACTGGGGTTCTTTATGCAGTTTTACAGCCTATTTTTGAGCTGCTTAAGAACCCAATCTCTGCAGTTCTGGTTGTCATTGTCATAGGTGGCTCCTTTTTCATCGTTTCTCAAATTGTTTCTGCTATGGTTGGCGTCTCCGATTTCTCTTATCAATACGCTTATTAG

Protein sequence

MKSIPNPKSSSFNNFSSYDSPAFLRHGNPNSLSLSAKNKYWVIQSQSKEQEEGIDEELKKRLLVFSGATSIGILLMMMGQDKAWALGPEGPLMEEFWENVRRYALYALTVSTGVLYAVLQPIFELLKNPISAVLVVIVIGGSFFIVSQIVSAMVGVSDFSYQYAY

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo06953	Spo06953	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo06953.1	Spo06953.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo06953.1.CDS.1	Spo06953.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo06953.1.exon.1	Spo06953.1.exon.1	exon

Homology

[Close]

BLAST of Spo06953.1 vs. NCBI nr
Match: gi|902189558|gb|KNA11397.1| (hypothetical protein SOVF_135610 [Spinacia oleracea])

HSP 1 Score: 313.9 bits (803), Expect = 1.600e-82
Identity = 164/165 (99.39%), Postives = 165/165 (100.00%), Query Frame = 1


		  
Query: 1   MKSIPNPKSSSFNNFSSYDSPAFLRHGNPNSLSLSAKNKYWVIQSQSKEQEEGIDEELKK 60
           +KSIPNPKSSSFNNFSSYDSPAFLRHGNPNSLSLSAKNKYWVIQSQSKEQEEGIDEELKK
Sbjct: 19  IKSIPNPKSSSFNNFSSYDSPAFLRHGNPNSLSLSAKNKYWVIQSQSKEQEEGIDEELKK 78

Query: 61  RLLVFSGATSIGILLMMMGQDKAWALGPEGPLMEEFWENVRRYALYALTVSTGVLYAVLQ 120
           RLLVFSGATSIGILLMMMGQDKAWALGPEGPLMEEFWENVRRYALYALTVSTGVLYAVLQ
Sbjct: 79  RLLVFSGATSIGILLMMMGQDKAWALGPEGPLMEEFWENVRRYALYALTVSTGVLYAVLQ 138

Query: 121 PIFELLKNPISAVLVVIVIGGSFFIVSQIVSAMVGVSDFSYQYAY 166
           PIFELLKNPISAVLVVIVIGGSFFIVSQIVSAMVGVSDFSYQYAY
Sbjct: 139 PIFELLKNPISAVLVVIVIGGSFFIVSQIVSAMVGVSDFSYQYAY 183

[Close]

BLAST of Spo06953.1 vs. NCBI nr
Match: gi|731350702|ref|XP_010686638.1| (PREDICTED: uncharacterized protein LOC104900815 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 197.2 bits (500), Expect = 2.200e-47
Identity = 112/172 (65.12%), Postives = 131/172 (76.16%), Query Frame = 1


		  
Query: 5   PNPKSSSFNNFSSYDSPAFLRHGNPNSLSLSAKNKYWVIQSQSKEQE---------EGID 64
           PN K SSF  F SY SPAFL  G P       K KYW+I+S +KE++         E  D
Sbjct: 20  PNLKFSSFG-FPSY-SPAFLGKGIPVPPKFPTKFKYWLIKSHNKEKDTTLSAAAVDENDD 79

Query: 65  EELKKR--LLVFSGATSIGILLMMMGQDKAWALGPEGPLMEEFWENVRRYALYALTVSTG 124
           +E  +R    V +GA SIG+LL++MGQDKAWALGPEGPLMEEFWENVRRYALYALTVSTG
Sbjct: 80  DEFHRRKSFQVITGAVSIGLLLLIMGQDKAWALGPEGPLMEEFWENVRRYALYALTVSTG 139

Query: 125 VLYAVLQPIFELLKNPISAVLVVIVIGGSFFIVSQIVSAMVGVSDFSYQYAY 166
           VLYAV QPI+ELLKNPISAVL +I+IGGS FI+SQ++ +MVGVSDFSY+YAY
Sbjct: 140 VLYAVFQPIYELLKNPISAVLTLIIIGGSIFIISQVLYSMVGVSDFSYEYAY 189

[Close]

BLAST of Spo06953.1 vs. NCBI nr
Match: gi|697103259|ref|XP_009605363.1| (PREDICTED: uncharacterized protein LOC104099929 [Nicotiana tomentosiformis])

HSP 1 Score: 157.9 bits (398), Expect = 1.500e-35
Identity = 81/140 (57.86%), Postives = 116/140 (82.86%), Query Frame = 1


		  
Query: 29  PNSLSLSAKNKYWVIQSQSKEQEEGIDEELKKRLLVFSGATSIGILLMMMG---QDKAWA 88
           P +L +S K+K +  +++  E E G++E+  K L++  GA S+G++L ++G   Q+KA A
Sbjct: 50  PIALQISHKSKIFS-RTEISESEAGLNEKSSKLLVL--GAVSVGVMLFLLGFDDQNKALA 109

Query: 89  LGPEGPLMEEFWENVRRYALYALTVSTGVLYAVLQPIFELLKNPISAVLVVIVIGGSFFI 148
           LGPEGPLMEEFW+N+RRYA+YALTVSTGVL+AV +PI+ELLKNPISA+L+++++GGSF+I
Sbjct: 110 LGPEGPLMEEFWDNMRRYAIYALTVSTGVLWAVFEPIYELLKNPISAILILVIMGGSFYI 169

Query: 149 VSQIVSAMVGVSDFSYQYAY 166
           VSQ+VSAMVG++DF+Y Y Y
Sbjct: 170 VSQVVSAMVGITDFAYDYNY 186

[Close]

BLAST of Spo06953.1 vs. NCBI nr
Match: gi|698439228|ref|XP_009758196.1| (PREDICTED: uncharacterized protein LOC104210918 [Nicotiana sylvestris])

HSP 1 Score: 156.0 bits (393), Expect = 5.700e-35
Identity = 80/140 (57.14%), Postives = 115/140 (82.14%), Query Frame = 1


		  
Query: 29  PNSLSLSAKNKYWVIQSQSKEQEEGIDEELKKRLLVFSGATSIGILLMMMG---QDKAWA 88
           P +L +  K+K  + ++++ E E  ++E+  K L++  GA S+G++L +MG   Q+KA A
Sbjct: 50  PIALQILHKSKK-ISRTENSESETSLNEKSSKLLVL--GAVSVGVMLFLMGFDDQNKALA 109

Query: 89  LGPEGPLMEEFWENVRRYALYALTVSTGVLYAVLQPIFELLKNPISAVLVVIVIGGSFFI 148
           LGPEGPLMEEFW+N+RRYA+YALTVSTGVL+AV +PI+ELLKNPISA+L+++++GGSF+I
Sbjct: 110 LGPEGPLMEEFWDNMRRYAIYALTVSTGVLWAVFEPIYELLKNPISAILILVIMGGSFYI 169

Query: 149 VSQIVSAMVGVSDFSYQYAY 166
           VSQ+VSAMVG++DF+Y Y Y
Sbjct: 170 VSQVVSAMVGITDFAYDYNY 186

[Close]

BLAST of Spo06953.1 vs. NCBI nr
Match: gi|255563788|ref|XP_002522895.1| (PREDICTED: uncharacterized protein LOC8280775 [Ricinus communis])

HSP 1 Score: 150.6 bits (379), Expect = 2.400e-33
Identity = 81/135 (60.00%), Postives = 102/135 (75.56%), Query Frame = 1


		  
Query: 35  SAKNKYW--VIQSQSKEQEEGIDEELKKRLLVFSGATSIGILLMMMGQD--KAWALGPEG 94
           S K+ Y+  + Q   +E+   +      R +V  GA S+G++L +MG D  KA ALGPEG
Sbjct: 52  SQKSLYFKPICQKHLREKRSNVSPNGCLRSVVV-GAASVGVVLFLMGMDEHKALALGPEG 111

Query: 95  PLMEEFWENVRRYALYALTVSTGVLYAVLQPIFELLKNPISAVLVVIVIGGSFFIVSQIV 154
           PLMEEFW+NVRRYALYALTVSTG LY +LQPI ELLKNPISAVLV+++ GGSF+IVSQ++
Sbjct: 112 PLMEEFWDNVRRYALYALTVSTGALYTILQPIVELLKNPISAVLVIVIFGGSFYIVSQVL 171

Query: 155 SAMVGVSDFSYQYAY 166
           SAM G++DFSY Y Y
Sbjct: 172 SAMFGITDFSYDYGY 185

[Close]

BLAST of Spo06953.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QVT6_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_135610 PE=4 SV=1)

HSP 1 Score: 313.9 bits (803), Expect = 1.100e-82
Identity = 164/165 (99.39%), Postives = 165/165 (100.00%), Query Frame = 1


		  
Query: 1   MKSIPNPKSSSFNNFSSYDSPAFLRHGNPNSLSLSAKNKYWVIQSQSKEQEEGIDEELKK 60
           +KSIPNPKSSSFNNFSSYDSPAFLRHGNPNSLSLSAKNKYWVIQSQSKEQEEGIDEELKK
Sbjct: 19  IKSIPNPKSSSFNNFSSYDSPAFLRHGNPNSLSLSAKNKYWVIQSQSKEQEEGIDEELKK 78

Query: 61  RLLVFSGATSIGILLMMMGQDKAWALGPEGPLMEEFWENVRRYALYALTVSTGVLYAVLQ 120
           RLLVFSGATSIGILLMMMGQDKAWALGPEGPLMEEFWENVRRYALYALTVSTGVLYAVLQ
Sbjct: 79  RLLVFSGATSIGILLMMMGQDKAWALGPEGPLMEEFWENVRRYALYALTVSTGVLYAVLQ 138

Query: 121 PIFELLKNPISAVLVVIVIGGSFFIVSQIVSAMVGVSDFSYQYAY 166
           PIFELLKNPISAVLVVIVIGGSFFIVSQIVSAMVGVSDFSYQYAY
Sbjct: 139 PIFELLKNPISAVLVVIVIGGSFFIVSQIVSAMVGVSDFSYQYAY 183

[Close]

BLAST of Spo06953.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BTB7_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_8g184580 PE=4 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 1.600e-47
Identity = 112/172 (65.12%), Postives = 131/172 (76.16%), Query Frame = 1


		  
Query: 5   PNPKSSSFNNFSSYDSPAFLRHGNPNSLSLSAKNKYWVIQSQSKEQE---------EGID 64
           PN K SSF  F SY SPAFL  G P       K KYW+I+S +KE++         E  D
Sbjct: 20  PNLKFSSFG-FPSY-SPAFLGKGIPVPPKFPTKFKYWLIKSHNKEKDTTLSAAAVDENDD 79

Query: 65  EELKKR--LLVFSGATSIGILLMMMGQDKAWALGPEGPLMEEFWENVRRYALYALTVSTG 124
           +E  +R    V +GA SIG+LL++MGQDKAWALGPEGPLMEEFWENVRRYALYALTVSTG
Sbjct: 80  DEFHRRKSFQVITGAVSIGLLLLIMGQDKAWALGPEGPLMEEFWENVRRYALYALTVSTG 139

Query: 125 VLYAVLQPIFELLKNPISAVLVVIVIGGSFFIVSQIVSAMVGVSDFSYQYAY 166
           VLYAV QPI+ELLKNPISAVL +I+IGGS FI+SQ++ +MVGVSDFSY+YAY
Sbjct: 140 VLYAVFQPIYELLKNPISAVLTLIIIGGSIFIISQVLYSMVGVSDFSYEYAY 189

[Close]

BLAST of Spo06953.1 vs. UniProtKB/TrEMBL
Match: B9SA76_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0862830 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 1.700e-33
Identity = 81/135 (60.00%), Postives = 102/135 (75.56%), Query Frame = 1


		  
Query: 35  SAKNKYW--VIQSQSKEQEEGIDEELKKRLLVFSGATSIGILLMMMGQD--KAWALGPEG 94
           S K+ Y+  + Q   +E+   +      R +V  GA S+G++L +MG D  KA ALGPEG
Sbjct: 52  SQKSLYFKPICQKHLREKRSNVSPNGCLRSVVV-GAASVGVVLFLMGMDEHKALALGPEG 111

Query: 95  PLMEEFWENVRRYALYALTVSTGVLYAVLQPIFELLKNPISAVLVVIVIGGSFFIVSQIV 154
           PLMEEFW+NVRRYALYALTVSTG LY +LQPI ELLKNPISAVLV+++ GGSF+IVSQ++
Sbjct: 112 PLMEEFWDNVRRYALYALTVSTGALYTILQPIVELLKNPISAVLVIVIFGGSFYIVSQVL 171

Query: 155 SAMVGVSDFSYQYAY 166
           SAM G++DFSY Y Y
Sbjct: 172 SAMFGITDFSYDYGY 185

[Close]

BLAST of Spo06953.1 vs. UniProtKB/TrEMBL
Match: A0A061GIF1_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_030411 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 2.900e-33
Identity = 75/104 (72.12%), Postives = 89/104 (85.58%), Query Frame = 1


		  
Query: 64  VFSGATSIGILLMMMGQD--KAWALGPEGPLMEEFWENVRRYALYALTVSTGVLYAVLQP 123
           V  GA SIG+ L++MG D  KA A GPEGPLMEEFW+NVRRYALYALTVSTG +Y + QP
Sbjct: 91  VIVGAVSIGLALLLMGADDQKALAFGPEGPLMEEFWDNVRRYALYALTVSTGAIYTIFQP 150

Query: 124 IFELLKNPISAVLVVIVIGGSFFIVSQIVSAMVGVSDFSYQYAY 166
           I ELLKNPISA+L++++IGGS +IVSQI+SAMVGV+DFSY YAY
Sbjct: 151 ILELLKNPISAILILVIIGGSIYIVSQILSAMVGVTDFSYSYAY 194

[Close]

BLAST of Spo06953.1 vs. UniProtKB/TrEMBL
Match: M1B0Y9_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400013294 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 8.300e-33
Identity = 74/106 (69.81%), Postives = 93/106 (87.74%), Query Frame = 1


		  
Query: 63  LVFSGATSIGILLMMMG---QDKAWALGPEGPLMEEFWENVRRYALYALTVSTGVLYAVL 122
           L+  GA S+G++L +MG   +++A ALGPEGPLMEEFWEN+RRY LYALTVSTGVL+AV 
Sbjct: 73  LLVLGAVSVGVVLFLMGFDDKNQALALGPEGPLMEEFWENMRRYGLYALTVSTGVLWAVF 132

Query: 123 QPIFELLKNPISAVLVVIVIGGSFFIVSQIVSAMVGVSDFSYQYAY 166
           QPI+ELLKNPISA+L++ ++GGSF+IVSQ+VSAMVGV+DFSY Y Y
Sbjct: 133 QPIYELLKNPISAILILTIMGGSFYIVSQVVSAMVGVTDFSYDYNY 178

[Close]

BLAST of Spo06953.1 vs. TAIR (Arabidopsis)
Match: AT4G16410.1 (unknown protein)

HSP 1 Score: 142.5 bits (358), Expect = 2.300e-34
Identity = 68/102 (66.67%), Postives = 90/102 (88.24%), Query Frame = 1


		  
Query: 67  GATSIGILLMM---MGQDKAWALGPEGPLMEEFWENVRRYALYALTVSTGVLYAVLQPIF 126
           G  S+G+++++   M  +KA ALGPEGPLMEEFW+NVRRY LYALTVSTG L AV +PIF
Sbjct: 84  GGVSVGLMMVLVLGMDAEKAMALGPEGPLMEEFWDNVRRYGLYALTVSTGALSAVFEPIF 143

Query: 127 ELLKNPISAVLVVIVIGGSFFIVSQIVSAMVGVSDFSYQYAY 166
           ELLKNPISA+L+++++GGSF+IVSQ+VSAM+GV++F+YQY+Y
Sbjct: 144 ELLKNPISAILILLILGGSFYIVSQVVSAMIGVNEFAYQYSY 185

The following BLAST results are available for this feature:

BLAST of Spo06953.1 vs. NCBI nr
BLAST of Spo06953.1 vs. UniProtKB/TrEMBL
BLAST of Spo06953.1 vs. ExPASy Swiss-Prot
BLAST of Spo06953.1 vs. TAIR (Arabidopsis)

BLAST of Spo06953.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902189558\|gb\|KNA11397.1\|	1.6e-82	99.3	hypothetical protein SOVF_1356...	[more]
gi\|731350702\|ref\|XP_010686638.1\|	2.2e-47	65.1	PREDICTED: uncharacterized pro...	[more]
gi\|697103259\|ref\|XP_009605363.1\|	1.5e-35	57.8	PREDICTED: uncharacterized pro...	[more]
gi\|698439228\|ref\|XP_009758196.1\|	5.7e-35	57.1	PREDICTED: uncharacterized pro...	[more]
gi\|255563788\|ref\|XP_002522895.1\|	2.4e-33	60.0	PREDICTED: uncharacterized pro...	[more]

BLAST of Spo06953.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9QVT6_SPIOL	1.1e-82	99.3	Uncharacterized protein OS=Spi...	[more]
A0A0J8BTB7_BETVU	1.6e-47	65.1	Uncharacterized protein OS=Bet...	[more]
B9SA76_RICCO	1.7e-33	60.0	Putative uncharacterized prote...	[more]
A0A061GIF1_THECC	2.9e-33	72.1	Uncharacterized protein OS=The...	[more]
M1B0Y9_SOLTU	8.3e-33	69.8	Uncharacterized protein OS=Sol...	[more]

BLAST of Spo06953.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Spo06953.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1


Match Name	E-value	Identity	Description
AT4G16410.1	2.3e-34	66.6	unknown protein	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008470	Uncharacterised protein family Ycf33	PFAM	PF05421	DUF751	coord: 96..155 score: 2.5
None	No IPR available	PANTHER	PTHR36049	FAMILY NOT NAMED	coord: 44..165 score: 3.8
None	No IPR available	PANTHER	PTHR36049:SF3	SUBFAMILY NOT NAMED	coord: 44..165 score: 3.8