Spo07319.1 (mRNA)

Overview
NameSpo07319.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
Locationchr3 : 57865664 .. 57868401 (-)
Sequence length2337
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GGAAAAAAAATGAAAAACCTCTTTCACTTTTGGGCCAACAGAGAGCTAGAGAGAGAATGAAAATTTCATTTAAGCGCCATAAACAAAAGAGAGAAGAGTGGGGGGGAATTTCTAGCGCCATTGTCAATCGAAAGCTAAGAGACTGAAATTTTCATTTGCCCTTTAACCAATTCACAAAAATATTGAGCGCCATAACCAAATCACTGAAATTTTGAGCGCCATAAACGATGTTCCTGTCCCCTTCTGAAACCTCACTTTCTCCTTCTTCTTCATCTTCTACCTTTATTCTCTCTCCTACTTCGGTCGTCCGTGGTATCAACGATAACCCTTCTCTTCATGAGAATCCACCGGCGGAGATCCCCGATGATGTGAAGCCGTCGCTGGTTGTGGTGGACCTTCGCCATATCTGTCCCTCTTTGTCAATTTTGTTTATCAAATTTGTCATCCTTTCTTTTAATTATTGCTAGTTTAGATGATTTCACTCTCTTCAGAATCGATTTTATTATTTTCTTTGCTATTTTATTGAAATTTCAGCATGTCACTGATTTGTGTAGGAGAGAAACCCTTGTTCGTATTACAAGTGAAAACTCGTTTTTTCATTGTTGATTTTTTAGGTTTTTTTATGTGATACTCCGTACTATTTTCAGGGTTTATTGTGTTTTTGATGATATGTTGTTATAATTGATTGATTACAGTTTGCAAGTGATTTGGGTGTTTTTGATTGATCGATTTGATGCTTTACTCTTCACGTGAATTAAAATTTCCTCAATTATCGTATTTTATGGATTGATTTTGACCTTAGTAATTATATAATTTTCCTATAATCTGCTGAACATTAGTAGAACTGATTTTGGGAGAAATAAGATTAATATCAAATGAATTACATTGCATCATATCATAGAATTATGCCGTTTTATTTTACTTGCGTTGTTTGTTTGTAGTTGATGTTTAGTGCCTCTGGTACTTTAACTCGGTTATTTTTCCATCAGAGATGGTTGTAGTTGTAAGCTCTGTCGAAAAAATCCTTGTTTGTTTTGTTAGGCTTTTGATATCTTGAAACGTTTGTTTGCAGTTTCTTGCAGTTTCATTCCATTTACTTCCCTGTAAAATATACTGCTTACTACTATTGTATGAATTGAACTCTGTTCATTTTACAATTTTTTCCACTTCGGACCTCACACTTATTTCACCCCTTAGTAGAAAGTAACTCTCTTATATTATTTTATTGATGAGCTATCTGTGGAGTGTACAAATTCATTGAATTTTATGTGCAATACTCCTTTGCTGTTCAGCTTGTGTTAGTTCGCTTCTTCCCTTCCTGAGGTTAATGCCACTTCAAAGGAAGGATGGTTTGTAATGTAGAAAAATCGGCTGAGATAGTAAATGTTGATAATCTTCCAAGGAAAGGGAATACCAATAAGCGACCTAAATTAGTTCCTACAACAGATTTTCTCTTAGAGTCATTCTTCATGACTAACAGAAACGCAAGTTCAGCAAGAGAAGATGACCGGAGCGATTTGTATGATCTGTCTGTTTTTGAGATGCCCAAAAATAGAGTTGATATTGATCACATGAGTATGCTAATAGGGAATACATGTCTAAAGTTTGCACGGCGTTGCAAGAAAGTCAAATTGAAGAGGCCTCACCTGATGATGTGAAATGCCAAATGGCTGAAAGTACTTTTGAGATCTCAAGTTAGTTCCTCGAGTTTGTGTCTATTTTTCTTTCAGCATGGTTAAATAGATCCTTGGGAGGGTACCAAATTCTGCTCATCCAACAACCATAACAATCTAATATTCTAACATATACCACCACACTGTATTTCTACTTGGATCGGGTTGGATTGTTTGGTACCTCCCTGGAATTTTTGTGATATTCCTCTGGATATTCCTAGCTGAAGTTCAATTTGTGAATTTACATTGTTCTGTTTCTTCTCACTCATCTATAGTTTATTGGCATCTTTTACAGACGAAGCAGATTGGTCAAGAAAGGAATGTGTAGCTGTACCGCTACCCAACAATAGTAGGATAGACATGCCTTTGAACTTCAGTATGCCCCCGAGATTTCTCACATTTCCATATCTGAATGAGTTCTCAGCTCGTTCATCCCCCTGTGAGCCTCCTGGTACTCCCCGTACATATTCCTTTTCCCTATTAGATAAATTTTAACAGTAGATGGCATGAGTTGCATTCAAATATATATACATGTCTTCCTCTGAAATGCATGTTGACTTAGTTTATCTCTTGATCAGGCGAAAGAATGAGAATAGTCAAGCAAGAACTGCAACGCTGGTGAAATTATTTGTGATCTTAACGCTAATACTCTGGACTGCAGCCTCCAAAACCCATCTAACCTTCACCATTTGATGAACTAACCCAGAACCAAAGCTGCACTGAACAAAACCAAAACTCTAGGTTCTGATCAGTCTGCTACAAGACTGCGGGAAATCAGAAAATACATTCGAGCTAAACCAGGCACCCTTCAGGTCTGATCGGGTCTATAGATGAAGTGTAGCCCCATTAGTTGTGCTTGTTGGCTTGTAAATGTTTCTTTATTCCACGTCTTTTGATTTTTTTGTTTTCTTCTTATTTTCTTGTCTTTTTCTTGTTGTTTACCATTTCTCGAAAGTTTTAAGGCGGGTTCCAAAAATAGGTGTGTCTGGCATGTGGAACGGTTATTCCTTGGTGTTGCAGGTTTAATCTCATAAAACTTATGGTCAAGCATTACATTCCCTGCAC

mRNA sequence

GGAAAAAAAATGAAAAACCTCTTTCACTTTTGGGCCAACAGAGAGCTAGAGAGAGAATGAAAATTTCATTTAAGCGCCATAAACAAAAGAGAGAAGAGTGGGGGGGAATTTCTAGCGCCATTGTCAATCGAAAGCTAAGAGACTGAAATTTTCATTTGCCCTTTAACCAATTCACAAAAATATTGAGCGCCATAACCAAATCACTGAAATTTTGAGCGCCATAAACGATGTTCCTGTCCCCTTCTGAAACCTCACTTTCTCCTTCTTCTTCATCTTCTACCTTTATTCTCTCTCCTACTTCGGTCGTCCGTGGTATCAACGATAACCCTTCTCTTCATGAGAATCCACCGGCGGAGATCCCCGATGATGTGAAGCCGTCGCTGGTTGTGGTGGACCTTCGCCATATCTGTCCCTCTTTGTCAATTTTGTTTATCAAATTTGTCATCCTTTCTTTTAATTATTGCTAGTTTAGATGATTTCACTCTCTTCAGAATCGATTTTATTATTTTCTTTGCTATTTTATTGAAATTTCAGCATGTCACTGATTTGTGTAGGAGAGAAACCCTTGTTCGTATTACAAGTGAAAACTCGTTTTTTCATTGTTGATTTTTTAGGTTTTTTTATGTGATACTCCGTACTATTTTCAGGGTTTATTGTGTTTTTGATGATATGTTGTTATAATTGATTGATTACAGTTTGCAAGTGATTTGGGTGTTTTTGATTGATCGATTTGATGCTTTACTCTTCACGTGAATTAAAATTTCCTCAATTATCGTATTTTATGGATTGATTTTGACCTTAGTAATTATATAATTTTCCTATAATCTGCTGAACATTAGTAGAACTGATTTTGGGAGAAATAAGATTAATATCAAATGAATTACATTGCATCATATCATAGAATTATGCCGTTTTATTTTACTTGCGTTGTTTGTTTGTAGTTGATGTTTAGTGCCTCTGGTACTTTAACTCGGTTATTTTTCCATCAGAGATGGTTGTAGTTGTAAGCTCTGTCGAAAAAATCCTTGTTTGTTTTGTTAGGCTTTTGATATCTTGAAACGTTTGTTTGCAGTTTCTTGCAGTTTCATTCCATTTACTTCCCTGTAAAATATACTGCTTACTACTATTGTATGAATTGAACTCTGTTCATTTTACAATTTTTTCCACTTCGGACCTCACACTTATTTCACCCCTTAGTAGAAAGTAACTCTCTTATATTATTTTATTGATGAGCTATCTGTGGAGTGTACAAATTCATTGAATTTTATGTGCAATACTCCTTTGCTGTTCAGCTTGTGTTAGTTCGCTTCTTCCCTTCCTGAGGTTAATGCCACTTCAAAGGAAGGATGGTTTGTAATGTAGAAAAATCGGCTGAGATAGTAAATGTTGATAATCTTCCAAGGAAAGGGAATACCAATAAGCGACCTAAATTAGTTCCTACAACAGATTTTCTCTTAGAGTCATTCTTCATGACTAACAGAAACGCAAGTTCAGCAAGAGAAGATGACCGGAGCGATTTGTATGATCTGTCTGTTTTTGAGATGCCCAAAAATAGAGTTGATATTGATCACATGAGTATGCTAATAGGGAATACATGTCTAAAGTTTGCACGGCGTTGCAAGAAAGTCAAATTGAAGAGGCCTCACCTGATGATGTGAAATGCCAAATGGCTGAAAGTACTTTTGAGATCTCAAACGAAGCAGATTGGTCAAGAAAGGAATGTGTAGCTGTACCGCTACCCAACAATAGTAGGATAGACATGCCTTTGAACTTCAGTATGCCCCCGAGATTTCTCACATTTCCATATCTGAATGAGTTCTCAGCTCGTTCATCCCCCTGTGAGCCTCCTGGCGAAAGAATGAGAATAGTCAAGCAAGAACTGCAACGCTGGTGAAATTATTTGTGATCTTAACGCTAATACTCTGGACTGCAGCCTCCAAAACCCATCTAACCTTCACCATTTGATGAACTAACCCAGAACCAAAGCTGCACTGAACAAAACCAAAACTCTAGGTTCTGATCAGTCTGCTACAAGACTGCGGGAAATCAGAAAATACATTCGAGCTAAACCAGGCACCCTTCAGGTCTGATCGGGTCTATAGATGAAGTGTAGCCCCATTAGTTGTGCTTGTTGGCTTGTAAATGTTTCTTTATTCCACGTCTTTTGATTTTTTTGTTTTCTTCTTATTTTCTTGTCTTTTTCTTGTTGTTTACCATTTCTCGAAAGTTTTAAGGCGGGTTCCAAAAATAGGTGTGTCTGGCATGTGGAACGGTTATTCCTTGGTGTTGCAGGTTTAATCTCATAAAACTTATGGTCAAGCATTACATTCCCTGCAC

Coding sequence (CDS)

ATGTCTAAAGTTTGCACGGCGTTGCAAGAAAGTCAAATTGAAGAGGCCTCACCTGATGATGTGAAATGCCAAATGGCTGAAAGTACTTTTGAGATCTCAAACGAAGCAGATTGGTCAAGAAAGGAATGTGTAGCTGTACCGCTACCCAACAATAGTAGGATAGACATGCCTTTGAACTTCAGTATGCCCCCGAGATTTCTCACATTTCCATATCTGAATGAGTTCTCAGCTCGTTCATCCCCCTGTGAGCCTCCTGGCGAAAGAATGAGAATAGTCAAGCAAGAACTGCAACGCTGGTGA

Protein sequence

MSKVCTALQESQIEEASPDDVKCQMAESTFEISNEADWSRKECVAVPLPNNSRIDMPLNFSMPPRFLTFPYLNEFSARSSPCEPPGERMRIVKQELQRW
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo07319Spo07319gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo07319.1Spo07319.1-proteinpolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo07319.1.utr5p.1Spo07319.1.utr5p.1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo07319.1.CDS.3Spo07319.1.CDS.3CDS
Spo07319.1.CDS.2Spo07319.1.CDS.2CDS
Spo07319.1.CDS.1Spo07319.1.CDS.1CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo07319.1.utr3p.1Spo07319.1.utr3p.1three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo07319.1.exon.3Spo07319.1.exon.3exon
Spo07319.1.exon.2Spo07319.1.exon.2exon
Spo07319.1.exon.1Spo07319.1.exon.1exon


Homology
[Close]
BLAST of Spo07319.1 vs. NCBI nr
Match: gi|902177634|gb|KNA08980.1| (hypothetical protein SOVF_157230 isoform A [Spinacia oleracea])

HSP 1 Score: 203.8 bits (517), Expect = 1.400e-49
Identity = 98/99 (98.99%), Postives = 98/99 (98.99%), Query Frame = 1 

		  

Query: 1   MSKVCTALQESQIEEASPDDVKCQMAESTFEISNEADWSRKECVAVPLPNNSRIDMPLNF 60
           MSKVCTALQESQIEEASPDDVKCQMAESTFEISNEADWSRKECVAVPLPNNSRIDMPLNF
Sbjct: 1   MSKVCTALQESQIEEASPDDVKCQMAESTFEISNEADWSRKECVAVPLPNNSRIDMPLNF 60

Query: 61  SMPPRFLTFPYLNEFSARSSPCEPPGERMRIVKQELQRW 100
           SMPPRFLTFPY NEFSARSSPCEPPGERMRIVKQELQRW
Sbjct: 61  SMPPRFLTFPYPNEFSARSSPCEPPGERMRIVKQELQRW 99
[Close]
BLAST of Spo07319.1 vs. NCBI nr
Match: gi|902177635|gb|KNA08981.1| (hypothetical protein SOVF_157230 isoform B [Spinacia oleracea])

HSP 1 Score: 188.3 bits (477), Expect = 6.200e-45
Identity = 94/99 (94.95%), Postives = 94/99 (94.95%), Query Frame = 1 

		  

Query: 1   MSKVCTALQESQIEEASPDDVKCQMAESTFEISNEADWSRKECVAVPLPNNSRIDMPLNF 60
           MSKVCTALQESQIEEASPDDVKCQMAESTFEISNEADWSRKECVAVPLPNNSRIDMPLNF
Sbjct: 1   MSKVCTALQESQIEEASPDDVKCQMAESTFEISNEADWSRKECVAVPLPNNSRIDMPLNF 60

Query: 61  SMPPRFLTFPYLNEFSARSSPCEPPGERMRIVKQELQRW 100
           SMPPRFLTFPY NEFSARSSPC    ERMRIVKQELQRW
Sbjct: 61  SMPPRFLTFPYPNEFSARSSPC----ERMRIVKQELQRW 95
[Close]
BLAST of Spo07319.1 vs. NCBI nr
Match: gi|902189577|gb|KNA11404.1| (hypothetical protein SOVF_135450 [Spinacia oleracea])

HSP 1 Score: 148.3 bits (373), Expect = 7.200e-33
Identity = 77/96 (80.21%), Postives = 82/96 (85.42%), Query Frame = 1 

		  

Query: 2   SKVCTALQESQIEEASPDDVKCQMAESTFEISNEADWSRKECVAVPLPNNSRIDMPLNFS 61
           SKVCTALQE+QIEEASPD VK QM E+TFE+SNEADWSRKECV V LPNN R+DMPLNFS
Sbjct: 277 SKVCTALQETQIEEASPDVVKYQMTENTFELSNEADWSRKECVVVALPNN-RVDMPLNFS 336

Query: 62  MPPRFLTFPYLNEFSARSSPCEPPGERMRIVKQELQ 98
           MP   LTFP  NEFSA +SP EPPGERMRIVKQE Q
Sbjct: 337 MPLDSLTFPNPNEFSALASPFEPPGERMRIVKQEPQ 371
[Close]
BLAST of Spo07319.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QP09_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_157230 PE=4 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 1.000e-49
Identity = 98/99 (98.99%), Postives = 98/99 (98.99%), Query Frame = 1 

		  

Query: 1   MSKVCTALQESQIEEASPDDVKCQMAESTFEISNEADWSRKECVAVPLPNNSRIDMPLNF 60
           MSKVCTALQESQIEEASPDDVKCQMAESTFEISNEADWSRKECVAVPLPNNSRIDMPLNF
Sbjct: 1   MSKVCTALQESQIEEASPDDVKCQMAESTFEISNEADWSRKECVAVPLPNNSRIDMPLNF 60

Query: 61  SMPPRFLTFPYLNEFSARSSPCEPPGERMRIVKQELQRW 100
           SMPPRFLTFPY NEFSARSSPCEPPGERMRIVKQELQRW
Sbjct: 61  SMPPRFLTFPYPNEFSARSSPCEPPGERMRIVKQELQRW 99
[Close]
BLAST of Spo07319.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QR18_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_157230 PE=4 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 4.300e-45
Identity = 94/99 (94.95%), Postives = 94/99 (94.95%), Query Frame = 1 

		  

Query: 1   MSKVCTALQESQIEEASPDDVKCQMAESTFEISNEADWSRKECVAVPLPNNSRIDMPLNF 60
           MSKVCTALQESQIEEASPDDVKCQMAESTFEISNEADWSRKECVAVPLPNNSRIDMPLNF
Sbjct: 1   MSKVCTALQESQIEEASPDDVKCQMAESTFEISNEADWSRKECVAVPLPNNSRIDMPLNF 60

Query: 61  SMPPRFLTFPYLNEFSARSSPCEPPGERMRIVKQELQRW 100
           SMPPRFLTFPY NEFSARSSPC    ERMRIVKQELQRW
Sbjct: 61  SMPPRFLTFPYPNEFSARSSPC----ERMRIVKQELQRW 95
[Close]
BLAST of Spo07319.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QVV9_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_135450 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 5.000e-33
Identity = 77/96 (80.21%), Postives = 82/96 (85.42%), Query Frame = 1 

		  

Query: 2   SKVCTALQESQIEEASPDDVKCQMAESTFEISNEADWSRKECVAVPLPNNSRIDMPLNFS 61
           SKVCTALQE+QIEEASPD VK QM E+TFE+SNEADWSRKECV V LPNN R+DMPLNFS
Sbjct: 277 SKVCTALQETQIEEASPDVVKYQMTENTFELSNEADWSRKECVVVALPNN-RVDMPLNFS 336

Query: 62  MPPRFLTFPYLNEFSARSSPCEPPGERMRIVKQELQ 98
           MP   LTFP  NEFSA +SP EPPGERMRIVKQE Q
Sbjct: 337 MPLDSLTFPNPNEFSALASPFEPPGERMRIVKQEPQ 371
The following BLAST results are available for this feature:
BLAST of Spo07319.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 3
Match NameE-valueIdentityDescription
gi|902177634|gb|KNA08980.1|1.4e-4998.9hypothetical protein SOVF_1572... [more]
gi|902177635|gb|KNA08981.1|6.2e-4594.9hypothetical protein SOVF_1572... [more]
gi|902189577|gb|KNA11404.1|7.2e-3380.2hypothetical protein SOVF_1354... [more]
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BLAST of Spo07319.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 3
Match NameE-valueIdentityDescription
A0A0K9QP09_SPIOL1.0e-4998.9Uncharacterized protein OS=Spi... [more]
A0A0K9QR18_SPIOL4.3e-4594.9Uncharacterized protein OS=Spi... [more]
A0A0K9QVV9_SPIOL5.0e-3380.2Uncharacterized protein OS=Spi... [more]
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BLAST of Spo07319.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo07319.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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