Spo07557.1 (mRNA)

Overview
NameSpo07557.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
LocationSpoScf_00529 : 345843 .. 347192 (+)
Sequence length1131
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCACCCCCTAATTCCTCCAACTATGACAAGTAAGTCTACGAAAGTGGATAAAACTTGAACAAATACTTGTCGAAGCAAAGTTTGATTTGTTATCATTAACCCACACATAATAACCGTGTTAACCCAAGATTCTTTAACCCACCTACGTAGCAGCCGTGTGTTTGCAATATTTCATAAATAAATAAAATACAAATGTGAATAAAATATTAAAAAAAACGCGCTCCAATAAATCAGCGCCTATTTGGAACCTTCCTTTTGAAAATTCTTTCTTACCTTTTACCTTTATGCCTTGTTTGCCTATATATACAAGTAGGAATATTAGTCATATCCTACCATAATATTTACTACAAGAGTTTTAATTTATCAAGCCTTACAAAAAAAAACAACTACAACTACCCAATTAATTTGTGATCACCTACCAAACAGAGAATATGAGTAAGTCAGAAACTCAACAACAAAAACAACAGCAGCAGCAGCAGCAACAAAACATGGACAACATTCCTCCTGCTGGTATTCATTTTCCCGATCCTATGTTTTAATTTTGTGTGGTTATTAATTGTGAGTTTGAGTTAATTTTGGAGTTGTGATGGTTGTATAGGTTACCCGACTCTAAATACTCCCGAAGGAAAGATGAAGAAGAAGGGCTGGTTCGGTACCAAGAAGAGGGGCGAGAAAGGTTTCATTGAAGGATGGTACGTTACATATATACCTTTCTCTGTTGTTCTTTATTCTTTCGATAAACCAAATTATAATAAGTTATTCATTTTGTTTGTTAATTGGTTTGTTGTATGTTGTCTAAAATTGCAGTTTGGCGGGGTTATGTTGCTGTTGGATCTGTGAAGAGTGCTGCTGCTAAAAGATTCATGGATTCATGATGATTTTTCTACCATCTTCTTAATATATTTTGTGGAGTGAATTTTTCAATTTATGTGTATTTAATTTATCATTTTATGAACATACAGGTCATGCTATTTATATATTTTTAAATATATATATATTGTCATGTGAATAATAAAAATAATATCCAGTGTTAGTTGTGTTATTTGATCTTGGTGTGGTCTAATGATTGTTCATTTTCTTGTATGGATTGCTGCGCGCAGCCTTGCAGCTTTATGCTGCTGTTGGCTTTTTGAAGAATGTTGTTAAAGTCTTCTCCAAAACATCAAATAAACCACCAAACTTTAAAATTCGATAAAAAAAAACAGGCGGTTTAGTACATCTAACATTAGATGTATCTGATAACAAGACATATGTACTTTTCGCAATCTTAATTAGTTTACGAGCTTGTAACATAGCTATGTGATTTTATCTTTGTCTCTTAGTAAAAGTTTGTTTTTTATTATGAGAAAA

mRNA sequence

CCACCCCCTAATTCCTCCAACTATGACAAGTAAGTCTACGAAAGTGGATAAAACTTGAACAAATACTTGTCGAAGCAAAGTTTGATTTGTTATCATTAACCCACACATAATAACCGTGTTAACCCAAGATTCTTTAACCCACCTACGTAGCAGCCGTGTGTTTGCAATATTTCATAAATAAATAAAATACAAATGTGAATAAAATATTAAAAAAAACGCGCTCCAATAAATCAGCGCCTATTTGGAACCTTCCTTTTGAAAATTCTTTCTTACCTTTTACCTTTATGCCTTGTTTGCCTATATATACAAGTAGGAATATTAGTCATATCCTACCATAATATTTACTACAAGAGTTTTAATTTATCAAGCCTTACAAAAAAAAACAACTACAACTACCCAATTAATTTGTGATCACCTACCAAACAGAGAATATGAGTAAGTCAGAAACTCAACAACAAAAACAACAGCAGCAGCAGCAGCAACAAAACATGGACAACATTCCTCCTGCTGGTTACCCGACTCTAAATACTCCCGAAGGAAAGATGAAGAAGAAGGGCTGGTTCGGTACCAAGAAGAGGGGCGAGAAAGTTTGGCGGGGTTATGTTGCTGTTGGATCTGTGAAGAGTGCTGCTGCTAAAAGATTCATGGATTCATGATGATTTTTCTACCATCTTCTTAATATATTTTGTGGAGTGAATTTTTCAATTTATGTGTATTTAATTTATCATTTTATGAACATACAGGTCATGCTATTTATATATTTTTAAATATATATATATTGTCATGTGAATAATAAAAATAATATCCAGTGTTAGTTGTGTTATTTGATCTTGGTGTGGTCTAATGATTGTTCATTTTCTTGTATGGATTGCTGCGCGCAGCCTTGCAGCTTTATGCTGCTGTTGGCTTTTTGAAGAATGTTGTTAAAGTCTTCTCCAAAACATCAAATAAACCACCAAACTTTAAAATTCGATAAAAAAAAACAGGCGGTTTAGTACATCTAACATTAGATGTATCTGATAACAAGACATATGTACTTTTCGCAATCTTAATTAGTTTACGAGCTTGTAACATAGCTATGTGATTTTATCTTTGTCTCTTAGTAAAAGTTTGTTTTTTATTATGAGAAAA

Coding sequence (CDS)

ATGAGTAAGTCAGAAACTCAACAACAAAAACAACAGCAGCAGCAGCAGCAACAAAACATGGACAACATTCCTCCTGCTGGTTACCCGACTCTAAATACTCCCGAAGGAAAGATGAAGAAGAAGGGCTGGTTCGGTACCAAGAAGAGGGGCGAGAAAGTTTGGCGGGGTTATGTTGCTGTTGGATCTGTGAAGAGTGCTGCTGCTAAAAGATTCATGGATTCATGA

Protein sequence

MSKSETQQQKQQQQQQQQNMDNIPPAGYPTLNTPEGKMKKKGWFGTKKRGEKVWRGYVAVGSVKSAAAKRFMDS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo07557Spo07557gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo07557.1Spo07557.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo07557.1.exon.1Spo07557.1.exon.1exon
Spo07557.1.exon.2Spo07557.1.exon.2exon
Spo07557.1.exon.3Spo07557.1.exon.3exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo07557.1.utr5p.1Spo07557.1.utr5p.1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo07557.1.CDS.1Spo07557.1.CDS.1CDS
Spo07557.1.CDS.2Spo07557.1.CDS.2CDS
Spo07557.1.CDS.3Spo07557.1.CDS.3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo07557.1.utr3p.1Spo07557.1.utr3p.1three_prime_UTR


Homology
[Close]
BLAST of Spo07557.1 vs. NCBI nr
Match: gi|902211801|gb|KNA16814.1| (hypothetical protein SOVF_085780 [Spinacia oleracea])

HSP 1 Score: 101.3 bits (251), Expect = 7.500e-19
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 1 

		  

Query: 1  MSKSETQQQKQQQQQQQQNMDNIPPAGYPTLNTPEGKMKKKGWFGTKKRGEK 53
          MSKSETQQQKQQQQQQQQNMDNIPPAGYPTLNTPEGKMKKKGWFGTKKRGEK
Sbjct: 1  MSKSETQQQKQQQQQQQQNMDNIPPAGYPTLNTPEGKMKKKGWFGTKKRGEK 52
[Close]
BLAST of Spo07557.1 vs. NCBI nr
Match: gi|870863994|gb|KMT15127.1| (hypothetical protein BVRB_3g062450 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 77.4 bits (189), Expect = 1.200e-11
Identity = 37/44 (84.09%), Postives = 40/44 (90.91%), Query Frame = 1 

		  

Query: 9  QKQQQQQQQQNMDNIPPAGYPTLNTPEGKMKKKGWFGTKKRGEK 53
          + QQQQQQQQNMDN+PP GYPTLN+PEGKMKKK WF TKKRGEK
Sbjct: 5  ENQQQQQQQQNMDNVPPPGYPTLNSPEGKMKKKSWFRTKKRGEK 48
[Close]
BLAST of Spo07557.1 vs. NCBI nr
Match: gi|870863995|gb|KMT15128.1| (hypothetical protein BVRB_3g062460 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 71.6 bits (174), Expect = 6.400e-10
Identity = 37/52 (71.15%), Postives = 42/52 (80.77%), Query Frame = 1 

		  

Query: 1  MSKSETQQQKQQQQQQQQNMDNIPPAGYPTLNTPEGKMKKKGWFGTKKRGEK 53
          MSK+ETQ      QQQQ NMDN+PP GYPTLN+PEGK+KKKGWF TK RG+K
Sbjct: 1  MSKTETQ------QQQQLNMDNVPPPGYPTLNSPEGKIKKKGWFRTKTRGDK 46
[Close]
BLAST of Spo07557.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RCU0_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_085780 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 5.200e-19
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 1 

		  

Query: 1  MSKSETQQQKQQQQQQQQNMDNIPPAGYPTLNTPEGKMKKKGWFGTKKRGEK 53
          MSKSETQQQKQQQQQQQQNMDNIPPAGYPTLNTPEGKMKKKGWFGTKKRGEK
Sbjct: 1  MSKSETQQQKQQQQQQQQNMDNIPPAGYPTLNTPEGKMKKKGWFGTKKRGEK 52
[Close]
BLAST of Spo07557.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CNM8_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g062450 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 8.100e-12
Identity = 37/44 (84.09%), Postives = 40/44 (90.91%), Query Frame = 1 

		  

Query: 9  QKQQQQQQQQNMDNIPPAGYPTLNTPEGKMKKKGWFGTKKRGEK 53
          + QQQQQQQQNMDN+PP GYPTLN+PEGKMKKK WF TKKRGEK
Sbjct: 5  ENQQQQQQQQNMDNVPPPGYPTLNSPEGKMKKKSWFRTKKRGEK 48
[Close]
BLAST of Spo07557.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CT63_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g062460 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 4.400e-10
Identity = 37/52 (71.15%), Postives = 42/52 (80.77%), Query Frame = 1 

		  

Query: 1  MSKSETQQQKQQQQQQQQNMDNIPPAGYPTLNTPEGKMKKKGWFGTKKRGEK 53
          MSK+ETQ      QQQQ NMDN+PP GYPTLN+PEGK+KKKGWF TK RG+K
Sbjct: 1  MSKTETQ------QQQQLNMDNVPPPGYPTLNSPEGKIKKKGWFRTKTRGDK 46
The following BLAST results are available for this feature:
BLAST of Spo07557.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 3
Match NameE-valueIdentityDescription
gi|902211801|gb|KNA16814.1|7.5e-19100.hypothetical protein SOVF_0857... [more]
gi|870863994|gb|KMT15127.1|1.2e-1184.0hypothetical protein BVRB_3g06... [more]
gi|870863995|gb|KMT15128.1|6.4e-1071.1hypothetical protein BVRB_3g06... [more]
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BLAST of Spo07557.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 3
Match NameE-valueIdentityDescription
A0A0K9RCU0_SPIOL5.2e-19100.Uncharacterized protein OS=Spi... [more]
A0A0J8CNM8_BETVU8.1e-1284.0Uncharacterized protein OS=Bet... [more]
A0A0J8CT63_BETVU4.4e-1071.1Uncharacterized protein OS=Bet... [more]
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BLAST of Spo07557.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo07557.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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