Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCACCCCCTAATTCCTCCAACTATGACAAGTAAGTCTACGAAAGTGGATAAAACTTGAACAAATACTTGTCGAAGCAAAGTTTGATTTGTTATCATTAACCCACACATAATAACCGTGTTAACCCAAGATTCTTTAACCCACCTACGTAGCAGCCGTGTGTTTGCAATATTTCATAAATAAATAAAATACAAATGTGAATAAAATATTAAAAAAAACGCGCTCCAATAAATCAGCGCCTATTTGGAACCTTCCTTTTGAAAATTCTTTCTTACCTTTTACCTTTATGCCTTGTTTGCCTATATATACAAGTAGGAATATTAGTCATATCCTACCATAATATTTACTACAAGAGTTTTAATTTATCAAGCCTTACAAAAAAAAACAACTACAACTACCCAATTAATTTGTGATCACCTACCAAACAGAGAATATGAGTAAGTCAGAAACTCAACAACAAAAACAACAGCAGCAGCAGCAGCAACAAAACATGGACAACATTCCTCCTGCTGGTATTCATTTTCCCGATCCTATGTTTTAATTTTGTGTGGTTATTAATTGTGAGTTTGAGTTAATTTTGGAGTTGTGATGGTTGTATAGGTTACCCGACTCTAAATACTCCCGAAGGAAAGATGAAGAAGAAGGGCTGGTTCGGTACCAAGAAGAGGGGCGAGAAAGGTTTCATTGAAGGATGGTACGTTACATATATACCTTTCTCTGTTGTTCTTTATTCTTTCGATAAACCAAATTATAATAAGTTATTCATTTTGTTTGTTAATTGGTTTGTTGTATGTTGTCTAAAATTGCAGTTTGGCGGGGTTATGTTGCTGTTGGATCTGTGAAGAGTGCTGCTGCTAAAAGATTCATGGATTCATGATGATTTTTCTACCATCTTCTTAATATATTTTGTGGAGTGAATTTTTCAATTTATGTGTATTTAATTTATCATTTTATGAACATACAGGTCATGCTATTTATATATTTTTAAATATATATATATTGTCATGTGAATAATAAAAATAATATCCAGTGTTAGTTGTGTTATTTGATCTTGGTGTGGTCTAATGATTGTTCATTTTCTTGTATGGATTGCTGCGCGCAGCCTTGCAGCTTTATGCTGCTGTTGGCTTTTTGAAGAATGTTGTTAAAGTCTTCTCCAAAACATCAAATAAACCACCAAACTTTAAAATTCGATAAAAAAAAACAGGCGGTTTAGTACATCTAACATTAGATGTATCTGATAACAAGACATATGTACTTTTCGCAATCTTAATTAGTTTACGAGCTTGTAACATAGCTATGTGATTTTATCTTTGTCTCTTAGTAAAAGTTTGTTTTTTATTATGAGAAAA
mRNA sequence
CCACCCCCTAATTCCTCCAACTATGACAAGTAAGTCTACGAAAGTGGATAAAACTTGAACAAATACTTGTCGAAGCAAAGTTTGATTTGTTATCATTAACCCACACATAATAACCGTGTTAACCCAAGATTCTTTAACCCACCTACGTAGCAGCCGTGTGTTTGCAATATTTCATAAATAAATAAAATACAAATGTGAATAAAATATTAAAAAAAACGCGCTCCAATAAATCAGCGCCTATTTGGAACCTTCCTTTTGAAAATTCTTTCTTACCTTTTACCTTTATGCCTTGTTTGCCTATATATACAAGTAGGAATATTAGTCATATCCTACCATAATATTTACTACAAGAGTTTTAATTTATCAAGCCTTACAAAAAAAAACAACTACAACTACCCAATTAATTTGTGATCACCTACCAAACAGAGAATATGAGTAAGTCAGAAACTCAACAACAAAAACAACAGCAGCAGCAGCAGCAACAAAACATGGACAACATTCCTCCTGCTGGTTACCCGACTCTAAATACTCCCGAAGGAAAGATGAAGAAGAAGGGCTGGTTCGGTACCAAGAAGAGGGGCGAGAAAGTTTGGCGGGGTTATGTTGCTGTTGGATCTGTGAAGAGTGCTGCTGCTAAAAGATTCATGGATTCATGATGATTTTTCTACCATCTTCTTAATATATTTTGTGGAGTGAATTTTTCAATTTATGTGTATTTAATTTATCATTTTATGAACATACAGGTCATGCTATTTATATATTTTTAAATATATATATATTGTCATGTGAATAATAAAAATAATATCCAGTGTTAGTTGTGTTATTTGATCTTGGTGTGGTCTAATGATTGTTCATTTTCTTGTATGGATTGCTGCGCGCAGCCTTGCAGCTTTATGCTGCTGTTGGCTTTTTGAAGAATGTTGTTAAAGTCTTCTCCAAAACATCAAATAAACCACCAAACTTTAAAATTCGATAAAAAAAAACAGGCGGTTTAGTACATCTAACATTAGATGTATCTGATAACAAGACATATGTACTTTTCGCAATCTTAATTAGTTTACGAGCTTGTAACATAGCTATGTGATTTTATCTTTGTCTCTTAGTAAAAGTTTGTTTTTTATTATGAGAAAA
Coding sequence (CDS)
ATGAGTAAGTCAGAAACTCAACAACAAAAACAACAGCAGCAGCAGCAGCAACAAAACATGGACAACATTCCTCCTGCTGGTTACCCGACTCTAAATACTCCCGAAGGAAAGATGAAGAAGAAGGGCTGGTTCGGTACCAAGAAGAGGGGCGAGAAAGTTTGGCGGGGTTATGTTGCTGTTGGATCTGTGAAGAGTGCTGCTGCTAAAAGATTCATGGATTCATGA
Protein sequence
MSKSETQQQKQQQQQQQQNMDNIPPAGYPTLNTPEGKMKKKGWFGTKKRGEKVWRGYVAVGSVKSAAAKRFMDS
Relationships
This mRNA is a part of the following gene feature(s):
| Feature Name | Unique Name | Type |
|---|
| Spo07557 | Spo07557 | gene |
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Type |
|---|
| Spo07557.1 | Spo07557.1-protein | polypeptide |
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| Spo07557.1.exon.1 | Spo07557.1.exon.1 | exon |
| Spo07557.1.exon.2 | Spo07557.1.exon.2 | exon |
| Spo07557.1.exon.3 | Spo07557.1.exon.3 | exon |
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| Spo07557.1.utr5p.1 | Spo07557.1.utr5p.1 | five_prime_UTR |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| Spo07557.1.CDS.1 | Spo07557.1.CDS.1 | CDS |
| Spo07557.1.CDS.2 | Spo07557.1.CDS.2 | CDS |
| Spo07557.1.CDS.3 | Spo07557.1.CDS.3 | CDS |
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| Spo07557.1.utr3p.1 | Spo07557.1.utr3p.1 | three_prime_UTR |
Homology
BLAST of Spo07557.1 vs. NCBI nr
Match:
gi|902211801|gb|KNA16814.1| (hypothetical protein SOVF_085780 [Spinacia oleracea])
HSP 1 Score: 101.3 bits (251), Expect = 7.500e-19
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 1
Query: 1 MSKSETQQQKQQQQQQQQNMDNIPPAGYPTLNTPEGKMKKKGWFGTKKRGEK 53
MSKSETQQQKQQQQQQQQNMDNIPPAGYPTLNTPEGKMKKKGWFGTKKRGEK
Sbjct: 1 MSKSETQQQKQQQQQQQQNMDNIPPAGYPTLNTPEGKMKKKGWFGTKKRGEK 52
BLAST of Spo07557.1 vs. NCBI nr
Match:
gi|870863994|gb|KMT15127.1| (hypothetical protein BVRB_3g062450 [Beta vulgaris subsp. vulgaris])
HSP 1 Score: 77.4 bits (189), Expect = 1.200e-11
Identity = 37/44 (84.09%), Postives = 40/44 (90.91%), Query Frame = 1
Query: 9 QKQQQQQQQQNMDNIPPAGYPTLNTPEGKMKKKGWFGTKKRGEK 53
+ QQQQQQQQNMDN+PP GYPTLN+PEGKMKKK WF TKKRGEK
Sbjct: 5 ENQQQQQQQQNMDNVPPPGYPTLNSPEGKMKKKSWFRTKKRGEK 48
BLAST of Spo07557.1 vs. NCBI nr
Match:
gi|870863995|gb|KMT15128.1| (hypothetical protein BVRB_3g062460 [Beta vulgaris subsp. vulgaris])
HSP 1 Score: 71.6 bits (174), Expect = 6.400e-10
Identity = 37/52 (71.15%), Postives = 42/52 (80.77%), Query Frame = 1
Query: 1 MSKSETQQQKQQQQQQQQNMDNIPPAGYPTLNTPEGKMKKKGWFGTKKRGEK 53
MSK+ETQ QQQQ NMDN+PP GYPTLN+PEGK+KKKGWF TK RG+K
Sbjct: 1 MSKTETQ------QQQQLNMDNVPPPGYPTLNSPEGKIKKKGWFRTKTRGDK 46
BLAST of Spo07557.1 vs. UniProtKB/TrEMBL
Match:
A0A0K9RCU0_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_085780 PE=4 SV=1)
HSP 1 Score: 101.3 bits (251), Expect = 5.200e-19
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 1
Query: 1 MSKSETQQQKQQQQQQQQNMDNIPPAGYPTLNTPEGKMKKKGWFGTKKRGEK 53
MSKSETQQQKQQQQQQQQNMDNIPPAGYPTLNTPEGKMKKKGWFGTKKRGEK
Sbjct: 1 MSKSETQQQKQQQQQQQQNMDNIPPAGYPTLNTPEGKMKKKGWFGTKKRGEK 52
BLAST of Spo07557.1 vs. UniProtKB/TrEMBL
Match:
A0A0J8CNM8_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g062450 PE=4 SV=1)
HSP 1 Score: 77.4 bits (189), Expect = 8.100e-12
Identity = 37/44 (84.09%), Postives = 40/44 (90.91%), Query Frame = 1
Query: 9 QKQQQQQQQQNMDNIPPAGYPTLNTPEGKMKKKGWFGTKKRGEK 53
+ QQQQQQQQNMDN+PP GYPTLN+PEGKMKKK WF TKKRGEK
Sbjct: 5 ENQQQQQQQQNMDNVPPPGYPTLNSPEGKMKKKSWFRTKKRGEK 48
BLAST of Spo07557.1 vs. UniProtKB/TrEMBL
Match:
A0A0J8CT63_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g062460 PE=4 SV=1)
HSP 1 Score: 71.6 bits (174), Expect = 4.400e-10
Identity = 37/52 (71.15%), Postives = 42/52 (80.77%), Query Frame = 1
Query: 1 MSKSETQQQKQQQQQQQQNMDNIPPAGYPTLNTPEGKMKKKGWFGTKKRGEK 53
MSK+ETQ QQQQ NMDN+PP GYPTLN+PEGK+KKKGWF TK RG+K
Sbjct: 1 MSKTETQ------QQQQLNMDNVPPPGYPTLNSPEGKIKKKGWFRTKTRGDK 46
The following BLAST results are available for this feature:
BLAST of Spo07557.1 vs. NCBI nr
Analysis Date: 2018-06-29 (
blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 3
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BLAST of Spo07557.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (
blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 3
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BLAST of Spo07557.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (
blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
| Match Name | E-value | Identity | Description | |
|---|
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BLAST of Spo07557.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (
blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
| Match Name | E-value | Identity | Description | |
|---|
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