Spo07725.1 (mRNA) | SpinachBase

Overview


Name	Spo07725.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	Unknown protein
Location	chr6 : 28419920 .. 28420249 (-)
Sequence length	330

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGGAATTATTGAGAAGATTGGAGAGAAACTCCACATGGGAGGAGGTCATTCAGATGATAAGAAGAAAGATGATCATGACCATAAGAAGGATGGTGAGCACAAAGAAGGAGGAGGTATGATGTCTAAGATCCTTGGTCATGGTGATGACCATAAGGATAACAAGCATGGTCATAGTGATGGTGACCATAAGGATAAGAAACATGGTGATGGTGATCATAAGAAACATGATGATGGTGAGAAAAAGAAGAAGAAGAAGGATAAGAAGAAGAAGGAACATGGTCATGATCATGATGGTAGTGGTAGCAGCAGCAGCGACAGTGATTAG

mRNA sequence

ATGGCAGGAATTATTGAGAAGATTGGAGAGAAACTCCACATGGGAGGAGGTCATTCAGATGATAAGAAGAAAGATGATCATGACCATAAGAAGGATGGTGAGCACAAAGAAGGAGGAGGTATGATGTCTAAGATCCTTGGTCATGGTGATGACCATAAGGATAACAAGCATGGTCATAGTGATGGTGACCATAAGGATAAGAAACATGGTGATGGTGATCATAAGAAACATGATGATGGTGAGAAAAAGAAGAAGAAGAAGGATAAGAAGAAGAAGGAACATGGTCATGATCATGATGGTAGTGGTAGCAGCAGCAGCGACAGTGATTAG

Coding sequence (CDS)

ATGGCAGGAATTATTGAGAAGATTGGAGAGAAACTCCACATGGGAGGAGGTCATTCAGATGATAAGAAGAAAGATGATCATGACCATAAGAAGGATGGTGAGCACAAAGAAGGAGGAGGTATGATGTCTAAGATCCTTGGTCATGGTGATGACCATAAGGATAACAAGCATGGTCATAGTGATGGTGACCATAAGGATAAGAAACATGGTGATGGTGATCATAAGAAACATGATGATGGTGAGAAAAAGAAGAAGAAGAAGGATAAGAAGAAGAAGGAACATGGTCATGATCATGATGGTAGTGGTAGCAGCAGCAGCGACAGTGATTAG

Protein sequence

MAGIIEKIGEKLHMGGGHSDDKKKDDHDHKKDGEHKEGGGMMSKILGHGDDHKDNKHGHSDGDHKDKKHGDGDHKKHDDGEKKKKKKDKKKKEHGHDHDGSGSSSSDSD

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo07725	Spo07725	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo07725.1	Spo07725.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo07725.1.CDS.1	Spo07725.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo07725.1.exon.1	Spo07725.1.exon.1	exon

Homology

[Close]

BLAST of Spo07725.1 vs. NCBI nr
Match: gi|902184641|gb|KNA10336.1| (hypothetical protein SOVF_145300 [Spinacia oleracea])

HSP 1 Score: 204.9 bits (520), Expect = 7.100e-50
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 1


		  
Query: 1   MAGIIEKIGEKLHMGGGHSDDKKKDDHDHKKDGEHKEGGGMMSKILGHGDDHKDNKHGHS 60
           MAGIIEKIGEKLHMGGGHSDDKKKDDHDHKKDGEHKEGGGMMSKILGHGDDHKDNKHGHS
Sbjct: 1   MAGIIEKIGEKLHMGGGHSDDKKKDDHDHKKDGEHKEGGGMMSKILGHGDDHKDNKHGHS 60

Query: 61  DGDHKDKKHGDGDHKKHDDGEKKKKKKDKKKKEHGHDHDGSGSSSSDSD 110
           DGDHKDKKHGDGDHKKHDDGEKKKKKKDKKKKEHGHDHDGSGSSSSDSD
Sbjct: 61  DGDHKDKKHGDGDHKKHDDGEKKKKKKDKKKKEHGHDHDGSGSSSSDSD 109

[Close]

BLAST of Spo07725.1 vs. NCBI nr
Match: gi|731333581|ref|XP_010677808.1| (PREDICTED: probable zinc transporter protein DDB_G0282067 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 121.7 bits (304), Expect = 7.900e-25
Identity = 84/112 (75.00%), Postives = 90/112 (80.36%), Query Frame = 1


		  
Query: 1   MAGIIEKIGEKLHMGGGHSDDKKKDDHDHKKDGEHKEGGGMMSKILGHGD---DHKDNKH 60
           MAGIIEKIGEKLHMGG H  D+KKD+H HKKDG+HK+GG +MSKI GHG    DHKD+KH
Sbjct: 1   MAGIIEKIGEKLHMGGSH--DEKKDEH-HKKDGDHKDGG-LMSKITGHGHGDGDHKDHKH 60

Query: 61  GHSDGDHKDKKHGDGDHKKHDDGEKKKKKKDKKKKEHGHDHDGSGSSSSDSD 110
                DHKD KH D    KHDDGEKKKKKKD KKKEHGHDHDGSGSSSSDSD
Sbjct: 61  D----DHKDHKHDD---HKHDDGEKKKKKKD-KKKEHGHDHDGSGSSSSDSD 100

[Close]

BLAST of Spo07725.1 vs. NCBI nr
Match: gi|473954464|gb|EMS50885.1| (hypothetical protein TRIUR3_00737 [Triticum urartu])

HSP 1 Score: 73.2 bits (178), Expect = 3.200e-10
Identity = 63/116 (54.31%), Postives = 69/116 (59.48%), Query Frame = 1


		  
Query: 1   MAGIIEKIGEKLHMGGGHSDDKKKDDH-----DHKKDGEHKEGGGMMSKILG--HGDDHK 60
           MAGI+ KI EKLHMGGG  + KK ++H     +HKKDGEHKE  GMM KI     GD H 
Sbjct: 1   MAGIMHKIEEKLHMGGGSDEHKKAEEHKKKDGEHKKDGEHKE--GMMEKIKDKISGDGHG 60

Query: 61  DNKHGHSDGDHKDKKHGDGDHKKHDDGEKKKKKKDKKKKEHGHDHDGSGSSSSDSD 110
           D   G  DGDHK+KK              KKKKKDKK  E   D DG GSSSSDSD
Sbjct: 61  D---GKKDGDHKEKK-------------DKKKKKDKKHGEGHKDDDGHGSSSSDSD 98

[Close]

BLAST of Spo07725.1 vs. NCBI nr
Match: gi|242038671|ref|XP_002466730.1| (hypothetical protein SORBIDRAFT_01g013000 [Sorghum bicolor])

HSP 1 Score: 68.2 bits (165), Expect = 1.000e-8
Identity = 59/118 (50.00%), Postives = 71/118 (60.17%), Query Frame = 1


		  
Query: 1   MAGIIEKIGEKLHMGGGHS--DDKKKDDHD-----HKKDGEHKEGGGMMSKILGHGDDHK 60
           M+GII KI E LHMGG H   D+ KK++H      HKKDGEHKEG  ++ KI     D  
Sbjct: 1   MSGIIHKIEETLHMGGDHKKDDEHKKEEHKKAEEHHKKDGEHKEG--IVEKI----KDKI 60

Query: 61  DNKHGHSDGDHKDKKHGDGDHKKHDDGEKKKKKKDKKKKEH--GHDHDGSGSSSSDSD 110
             +HG   G+HKDK H           ++KK KK KK+K+H  GHDHDG  SSSSDSD
Sbjct: 61  TGEHGEKSGEHKDKDH-----------KEKKDKKKKKEKKHGEGHDHDGHSSSSSDSD 101

[Close]

BLAST of Spo07725.1 vs. NCBI nr
Match: gi|922351461|ref|XP_013451547.1| (hypothetical protein MTR_6g027810 [Medicago truncatula])

HSP 1 Score: 67.0 bits (162), Expect = 2.300e-8
Identity = 59/120 (49.17%), Postives = 66/120 (55.00%), Query Frame = 1


		  
Query: 1   MAGIIEKIGEKLHMGGGHS-----------DDKK--KDDHDHKKDGEHKEGGGMMSKILG 60
           MAGII KIGE LH+GGGH            DDK   +  HD K  GEHKE  G++ KI  
Sbjct: 1   MAGIINKIGEALHVGGGHKKEDEHKGEKSHDDKHKGEKSHDDKHKGEHKE--GIVDKI-- 60

Query: 61  HGDDHKDNKHGHSDGDHKDKKHGDGDHKKHDDGEKKKKKKDKKKKEHGHDHDGSGSSSSD 108
                KD  HG           GDG+  +H   +K KKKKDKKKKEHGHDHD S SS SD
Sbjct: 61  -----KDKIHG-----------GDGEGHEHKGEKKDKKKKDKKKKEHGHDHDSSSSSDSD 100

[Close]

BLAST of Spo07725.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QV01_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_145300 PE=4 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 4.900e-50
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 1


		  
Query: 1   MAGIIEKIGEKLHMGGGHSDDKKKDDHDHKKDGEHKEGGGMMSKILGHGDDHKDNKHGHS 60
           MAGIIEKIGEKLHMGGGHSDDKKKDDHDHKKDGEHKEGGGMMSKILGHGDDHKDNKHGHS
Sbjct: 1   MAGIIEKIGEKLHMGGGHSDDKKKDDHDHKKDGEHKEGGGMMSKILGHGDDHKDNKHGHS 60

Query: 61  DGDHKDKKHGDGDHKKHDDGEKKKKKKDKKKKEHGHDHDGSGSSSSDSD 110
           DGDHKDKKHGDGDHKKHDDGEKKKKKKDKKKKEHGHDHDGSGSSSSDSD
Sbjct: 61  DGDHKDKKHGDGDHKKHDDGEKKKKKKDKKKKEHGHDHDGSGSSSSDSD 109

[Close]

BLAST of Spo07725.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CGY7_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g109890 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 5.500e-25
Identity = 84/112 (75.00%), Postives = 90/112 (80.36%), Query Frame = 1


		  
Query: 1   MAGIIEKIGEKLHMGGGHSDDKKKDDHDHKKDGEHKEGGGMMSKILGHGD---DHKDNKH 60
           MAGIIEKIGEKLHMGG H  D+KKD+H HKKDG+HK+GG +MSKI GHG    DHKD+KH
Sbjct: 1   MAGIIEKIGEKLHMGGSH--DEKKDEH-HKKDGDHKDGG-LMSKITGHGHGDGDHKDHKH 60

Query: 61  GHSDGDHKDKKHGDGDHKKHDDGEKKKKKKDKKKKEHGHDHDGSGSSSSDSD 110
                DHKD KH D    KHDDGEKKKKKKD KKKEHGHDHDGSGSSSSDSD
Sbjct: 61  D----DHKDHKHDD---HKHDDGEKKKKKKD-KKKEHGHDHDGSGSSSSDSD 100

[Close]

BLAST of Spo07725.1 vs. UniProtKB/TrEMBL
Match: M7ZEP0_TRIUA (Uncharacterized protein OS=Triticum urartu GN=TRIUR3_00737 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 2.200e-10
Identity = 63/116 (54.31%), Postives = 69/116 (59.48%), Query Frame = 1


		  
Query: 1   MAGIIEKIGEKLHMGGGHSDDKKKDDH-----DHKKDGEHKEGGGMMSKILG--HGDDHK 60
           MAGI+ KI EKLHMGGG  + KK ++H     +HKKDGEHKE  GMM KI     GD H 
Sbjct: 1   MAGIMHKIEEKLHMGGGSDEHKKAEEHKKKDGEHKKDGEHKE--GMMEKIKDKISGDGHG 60

Query: 61  DNKHGHSDGDHKDKKHGDGDHKKHDDGEKKKKKKDKKKKEHGHDHDGSGSSSSDSD 110
           D   G  DGDHK+KK              KKKKKDKK  E   D DG GSSSSDSD
Sbjct: 61  D---GKKDGDHKEKK-------------DKKKKKDKKHGEGHKDDDGHGSSSSDSD 98

[Close]

BLAST of Spo07725.1 vs. UniProtKB/TrEMBL
Match: C5WQH5_SORBI (Putative uncharacterized protein Sb01g013000 OS=Sorghum bicolor GN=Sb01g013000 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 7.200e-9
Identity = 59/118 (50.00%), Postives = 71/118 (60.17%), Query Frame = 1


		  
Query: 1   MAGIIEKIGEKLHMGGGHS--DDKKKDDHD-----HKKDGEHKEGGGMMSKILGHGDDHK 60
           M+GII KI E LHMGG H   D+ KK++H      HKKDGEHKEG  ++ KI     D  
Sbjct: 1   MSGIIHKIEETLHMGGDHKKDDEHKKEEHKKAEEHHKKDGEHKEG--IVEKI----KDKI 60

Query: 61  DNKHGHSDGDHKDKKHGDGDHKKHDDGEKKKKKKDKKKKEH--GHDHDGSGSSSSDSD 110
             +HG   G+HKDK H           ++KK KK KK+K+H  GHDHDG  SSSSDSD
Sbjct: 61  TGEHGEKSGEHKDKDH-----------KEKKDKKKKKEKKHGEGHDHDGHSSSSSDSD 101

[Close]

BLAST of Spo07725.1 vs. UniProtKB/TrEMBL
Match: Q6B4T6_HORVD (Dehydrin 13 OS=Hordeum vulgare var. distichum GN=Dhn13 PE=2 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.600e-8
Identity = 62/120 (51.67%), Postives = 68/120 (56.67%), Query Frame = 1


		  
Query: 1   MAGIIEKIGEKLHMGGGHSDDKKKDDH-----------DHKKDGEHKEGGGMMSKILGHG 60
           MAGII KI EKLHMGG   + KK D+H           +HKKDGEHKEG  MM KI    
Sbjct: 1   MAGIIHKIEEKLHMGGSSDEHKKDDEHKKAEEHKKKDGEHKKDGEHKEG--MMEKI---- 60

Query: 61  DDHKDNKHGHSDGDHKDKKHGDGDHKKHDDGEKKKKKKDKKKKEHGHDHDGSGSSSSDSD 110
              KD   G   GD K     DGDHK+  + + KKKKKDKK  E   D DG  SSSSDSD
Sbjct: 61  ---KDKISGDGHGDGKK----DGDHKEKKEKKDKKKKKDKKDGEGHKDDDGHSSSSSDSD 107

[Close]

BLAST of Spo07725.1 vs. ExPASy Swiss-Prot
Match: SRC1_SOYBN (Protein SRC1 OS=Glycine max GN=SRC1 PE=2 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.500e-7
Identity = 61/115 (53.04%), Postives = 70/115 (60.87%), Query Frame = 1


		  
Query: 1   MAGIIEKIGEKLHMGGGHSDDKKKDDHDHKKDGEHK-EGGGMMSKILGHGDDHKDNKHG- 60
           M+GII KI E LH+GG H  ++ K +H  +  GEHK E  G       H  +HK  +H  
Sbjct: 1   MSGIIHKIEETLHVGG-HKKEEHKGEHHGEHKGEHKGEHHGE------HKGEHKGEQHHG 60

Query: 61  -HSDG---DHKDKKHGDGDHKKHDDGEKKKKKKDKKKKEHGHDHDGSGSSSSDSD 110
            H +G     KDK HGDG    HD GEKK KKKDKKKKEHGHDH G  SSSSDSD
Sbjct: 61  EHKEGLVDKIKDKIHGDG----HDKGEKK-KKKDKKKKEHGHDHHGH-SSSSDSD 102

[Close]

BLAST of Spo07725.1 vs. ExPASy Swiss-Prot
Match: HRD11_ARATH (Dehydrin HIRD11 OS=Arabidopsis thaliana GN=HIRD11 PE=1 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.300e-6
Identity = 55/115 (47.83%), Postives = 69/115 (60.00%), Query Frame = 1


		  
Query: 1   MAGIIEKIGEKLHMGGGHSDDKKKDDHDHK------KDGEHKEGGGMMSKILGHGDDHKD 60
           MAG+I KIG+ LH+GGG+ + + K + +HK      K GEHKE  G++ KI       KD
Sbjct: 1   MAGLINKIGDALHIGGGNKEGEHKKEEEHKKHVDEHKSGEHKE--GIVDKI-------KD 60

Query: 61  NKHGHSDGDHKDKKHGDGDHKKHDDGEKKKKKKDKKKKEHGHDHDGSGSSSSDSD 110
             HG     H      DG+ K HD   +KKKKKDKK+K+H HD DG  SSSSDSD
Sbjct: 61  KIHGGEGKSH------DGEGKSHDG--EKKKKKDKKEKKH-HD-DGHHSSSSDSD 96

[Close]

BLAST of Spo07725.1 vs. TAIR (Arabidopsis)
Match: AT1G54410.1 (dehydrin family protein)

HSP 1 Score: 53.9 bits (128), Expect = 7.100e-8
Identity = 55/115 (47.83%), Postives = 69/115 (60.00%), Query Frame = 1


		  
Query: 1   MAGIIEKIGEKLHMGGGHSDDKKKDDHDHK------KDGEHKEGGGMMSKILGHGDDHKD 60
           MAG+I KIG+ LH+GGG+ + + K + +HK      K GEHKE  G++ KI       KD
Sbjct: 1   MAGLINKIGDALHIGGGNKEGEHKKEEEHKKHVDEHKSGEHKE--GIVDKI-------KD 60

Query: 61  NKHGHSDGDHKDKKHGDGDHKKHDDGEKKKKKKDKKKKEHGHDHDGSGSSSSDSD 110
             HG     H      DG+ K HD   +KKKKKDKK+K+H HD DG  SSSSDSD
Sbjct: 61  KIHGGEGKSH------DGEGKSHDG--EKKKKKDKKEKKH-HD-DGHHSSSSDSD 96

The following BLAST results are available for this feature:

BLAST of Spo07725.1 vs. NCBI nr
BLAST of Spo07725.1 vs. UniProtKB/TrEMBL
BLAST of Spo07725.1 vs. ExPASy Swiss-Prot
BLAST of Spo07725.1 vs. TAIR (Arabidopsis)

BLAST of Spo07725.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902184641\|gb\|KNA10336.1\|	7.1e-50	100.	hypothetical protein SOVF_1453...	[more]
gi\|731333581\|ref\|XP_010677808.1\|	7.9e-25	75.0	PREDICTED: probable zinc trans...	[more]
gi\|473954464\|gb\|EMS50885.1\|	3.2e-10	54.3	hypothetical protein TRIUR3_00...	[more]
gi\|242038671\|ref\|XP_002466730.1\|	1.0e-8	50.0	hypothetical protein SORBIDRAF...	[more]
gi\|922351461\|ref\|XP_013451547.1\|	2.3e-8	49.1	hypothetical protein MTR_6g027...	[more]

BLAST of Spo07725.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9QV01_SPIOL	4.9e-50	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8CGY7_BETVU	5.5e-25	75.0	Uncharacterized protein OS=Bet...	[more]
M7ZEP0_TRIUA	2.2e-10	54.3	Uncharacterized protein OS=Tri...	[more]
C5WQH5_SORBI	7.2e-9	50.0	Putative uncharacterized prote...	[more]
Q6B4T6_HORVD	1.6e-8	51.6	Dehydrin 13 OS=Hordeum vulgare...	[more]

BLAST of Spo07725.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 2


Match Name	E-value	Identity	Description
SRC1_SOYBN	1.5e-7	53.0	Protein SRC1 OS=Glycine max GN...	[more]
HRD11_ARATH	1.3e-6	47.8	Dehydrin HIRD11 OS=Arabidopsis...	[more]

BLAST of Spo07725.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1


Match Name	E-value	Identity	Description
AT1G54410.1	7.1e-8	47.8	dehydrin family protein	[more]