Spo07829.1 (mRNA)

Overview
NameSpo07829.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
LocationSpoScf_00153 : 597673 .. 599800 (+)
Sequence length661
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TATCACTGACTAATTTTTTCTGTTTTCTTTTTTATTATTGTATTCCCTAATCACTCTCATGTCTGCTTCTCGGTGTTTCCTCTCCAGCCTTCCTTCCCTTTCTCTCTCCTCCCCCATCCTCTATGTCCTATAAGCTTGAACCCTGAAAATGGCCGACTTCTTCTTCAAGACCAAGAAAGTCAAGGTTGTTCTCCAAAGACTCCCATCTCTCTACTGGTTACGATTTATCCAGGTTTCTCTCTCCTCTCTAGAACATTCTAAAGTTACCACTTACCACTACTTGAAACATACCAACTATTCAAATTGAAACCCAGTTTCTTAAATCTACGAAATTGCATCTGCGAAATTGTTGGGAAGCTTTGGTTCCTACTGATTTGAGTATTGTTGTTCTTCGATCAAGGAACATATGCCCAATTTGGTATGTTTTCTCTCTTATTTGATGTTCCAGAAATTACCCAGTAATTTGATTGAGGAAATCGTATTTGTTCCTTGTTTTTCTTTGAAGCATTTGGTCAAACACATTGTGTGCATGTATTGATTTTTTGTCCGAATATTGAGGCAAACATTTTTATCTCAATTGTGATTTATATTAGGAAATTGTTGTCAAATTTTGGTAGATAATACCGAGTATTATATTGGATCATCACCCGCAATATGGTATATGGTGATTTGCACTCATCTTTTGTGTAATTTCTTTCGCTAAACTTCATCATTAATTTGATGAGAAATGTCTACAGAAAGTCTGTTATATTGATGAAATGCTAGAGAGATGAGCTTTTTAAAACTTTGAACCAACGAATTATTGTAACTATATGAAAATAAAGCAGGTTAATTGAAAATCTAAAGAATGAATCCGACCTTATTTTAGAACATTGGGAATAGATGAATTTGGCTTTGATCTTTTCCTTGTTATTTGATCGGCCATACTTGATGGACCTAGCTTGGAAGAACGAATAAGACCTTCATTAATGTAAGCAATGTCCATATTCTGTGGTAAAGAATCGACTTGATATTGATAGATGGCTTGACTCCCCCGCCACTTCTACAGGACACTCCTGTTGAACCACAACGTTATTATAAGCTCTTGGAGAAGGATACAATACAATTTGTAATAGCACGTAAGTGTAGTTTGGTTTCTGAAGCATCCATTCGGTCCATTCCCAGTAGCCCCTCTGCATCGTTTATTCATTAAATTTTATTTTCGGAAAATGTTTGTTTCATGATCTAATACATGGGTTTCTACAGTCGAGAATATTTGCTGCTGCATGAGAACTCCAATACCAAATCAACCTCAGCTACCAGACTCATAGTTGTCGTTGATGGCGCGAGAATATGCATAAGGATTCTTGCAGGATTTTCTTCAATCTTGCGAATGTGTTGCAAGTTCAACTTGCGAATGTGTTGCTCGTGTTGCTGATCTCTTAAACTTGTAAGTTGCTTGTTCTCGAAGTTAAAAGATCATTCATTTAGAGCTTATGTGTCAAGGTGGACCTTTTATTATTGTTTTTCCCTTCAGGTATGACTATGTACTGTGTTGTGGACTTTTGGCCTAATAGTTGTCATTGAACAACTTAATATTGAAAAATATGAATCAGTATACTTTGGACTTTGGAGTGTTATACCTAAAACTATGTATACAAGTCACTGGCTTCTTTTGTGTATGTGGCTCGATCTATCACTCTGTATTGATGTCAGCGAGGTTTATTAGAGGTGGGTTAATAGCCTACAAATTGTGCAAACCTGAAATACCTGCGTGCAAATTACAGTTTTTGTTTCTACTTGTGGAGTGTTTTTAAGAACATGTGAGTTATCATCATTTAGTGATTGAGTTGGGACTTGAGAGAGGATAAACGATTCATGATATTTTGTTCTGACTACTTCCCTTTTGGGCAATAGAATCTCAAGAATTTAGAGTGAAGTTCCTAATGCTAATACAAATATTTGGACACTACTAGAGAGACTAAGAAATGAAGCTCTAAGTTGTAGTTTATCTTGCTTAATTGTGTTCACAGATCACCCCATATTTCTATTTCACTTAAGTCTCCCCTCCCCCTCCCCCTCCCCCTTTCTCTTCCAATTTGATTACTGGCATACTATTGGGGACTTATGCAATCAGTATAAACTATGA

mRNA sequence

TATCACTGACTAATTTTTTCTGTTTTCTTTTTTATTATTGTATTCCCTAATCACTCTCATGTCTGCTTCTCGGTGTTTCCTCTCCAGCCTTCCTTCCCTTTCTCTCTCCTCCCCCATCCTCTATGTCCTATAAGCTTGAACCCTGAAAATGGCCGACTTCTTCTTCAAGACCAAGAAAGTCAAGGTTGTTCTCCAAAGACTCCCATCTCTCTACTGGTTACGATTTATCCAGGTTTCTCTCTCCTCTCTAGAACATTCTAAAGTTACCACTTACCACTACTTGAAACATACCAACTATTCAAATTGAAACCCAGTTTCTTAAATCTACGAAATTGCATCTGCGAAATTGTTGGGAAGCTTTGGTTCCTACTGATTTGAGTATTGTTGTTCTTCGATCAAGGAACATATGCCCAATTTGGACACTCCTGTTGAACCACAACGTTATTATAAGCTCTTGGAGAAGGATACAATACAATTTGTAATAGCACAGAGACTAAGAAATGAAGCTCTAAGTTGTAGTTTATCTTGCTTAATTGTGTTCACAGATCACCCCATATTTCTATTTCACTTAAGTCTCCCCTCCCCCTCCCCCTCCCCCTTTCTCTTCCAATTTGATTACTGGCATACTATTGGGGACTTATGCAATCAGTATAAACTATGA

Coding sequence (CDS)

ATGCCCAATTTGGACACTCCTGTTGAACCACAACGTTATTATAAGCTCTTGGAGAAGGATACAATACAATTTGTAATAGCACAGAGACTAAGAAATGAAGCTCTAAGTTGTAGTTTATCTTGCTTAATTGTGTTCACAGATCACCCCATATTTCTATTTCACTTAAGTCTCCCCTCCCCCTCCCCCTCCCCCTTTCTCTTCCAATTTGATTACTGGCATACTATTGGGGACTTATGCAATCAGTATAAACTATGA

Protein sequence

MPNLDTPVEPQRYYKLLEKDTIQFVIAQRLRNEALSCSLSCLIVFTDHPIFLFHLSLPSPSPSPFLFQFDYWHTIGDLCNQYKL
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo07829Spo07829gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo07829.1Spo07829.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo07829.1.exon.1Spo07829.1.exon.1exon
Spo07829.1.exon.2Spo07829.1.exon.2exon
Spo07829.1.exon.3Spo07829.1.exon.3exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo07829.1.utr5p.1Spo07829.1.utr5p.1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo07829.1.CDS.1Spo07829.1.CDS.1CDS
Spo07829.1.CDS.2Spo07829.1.CDS.2CDS
Spo07829.1.CDS.3Spo07829.1.CDS.3CDS


Homology
[Close]
BLAST of Spo07829.1 vs. NCBI nr
Match: gi|902201715|gb|KNA14046.1| (hypothetical protein SOVF_110980 [Spinacia oleracea])

HSP 1 Score: 58.9 bits (141), Expect = 4.800e-6
Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = 1 

		  

Query: 1  MPNLDTPVEPQRYYKLLEKDTIQFVIA 28
          MPNLDTPVEPQRYYKLLEKDTIQFVIA
Sbjct: 1  MPNLDTPVEPQRYYKLLEKDTIQFVIA 27
[Close]
BLAST of Spo07829.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R3F7_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_110980 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 3.400e-6
Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = 1 

		  

Query: 1  MPNLDTPVEPQRYYKLLEKDTIQFVIA 28
          MPNLDTPVEPQRYYKLLEKDTIQFVIA
Sbjct: 1  MPNLDTPVEPQRYYKLLEKDTIQFVIA 27
The following BLAST results are available for this feature:
BLAST of Spo07829.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 1
Match NameE-valueIdentityDescription
gi|902201715|gb|KNA14046.1|4.8e-6100.hypothetical protein SOVF_1109... [more]
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BLAST of Spo07829.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0K9R3F7_SPIOL3.4e-6100.Uncharacterized protein OS=Spi... [more]
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BLAST of Spo07829.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo07829.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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