Spo07892.1 (mRNA)

Overview
NameSpo07892.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
Locationchr2 : 38987266 .. 38992012 (-)
Sequence length1131
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACCACTCTATCCCCAAGATTGGCATCATCCCAATCATCAACTACTCATAAATATGTTATCACCGTCGAGGACCATAAAAAGGTGTCTACTAATTGGTTGCAAATTTTGAAAAATCAAGCTACGAGAATGAGAAAGAGGGATGAAACCATCTTATTCAGTATCCCAAAAAGGGTTTTTCTTAATGAACATGTGGTAGTGTTATGCTTGATTATGAGGACATCCTTGATTGGTGTTTCTAAGAAGAGATTGGAGCAACTCACTTGAATATTTGCATGAAGTAAGTACATTTCCGTTGTTATATCTCTAATTTGATTTAGAATTTCTTTGTTCATTAACTTATTTTATGTCCTACTTTTGATGGGAGAAGGCATTAGAAAGAAAGATGTTAAGACGAAGGAATTTTGAGTACGTATGGATTTTGCGATAGTAATGTTTTATCTGATCGATCTGAATGTTTAGCTCGTTTCTTTGGGTGTAGCGAGGGAAATAATCACATTGAACTATTCTTTGCACCTGGTAATGAGAAGTAGGTGCAATGTGAATTTTCTAACTTTATTTTCTTTTGATTCTGAAGATAGTTAAAGTGTTGAATTTTATTGATAGTTATTATTTCTCTTATAATTTGTGAACATTTGGAGCTGGATGTTAGCAACCATTAGCCCTTGGAATAGAGCAGTGCATGTATTAGTTGGATCCGACTGGTGCAAGAAAGGAGATCCTCGAGTTCACTAAAGCAGTTATCAATAAGTATGTATTATATCTTTCATTTTCCTTATCTTCTGATATCAACTTTTGCATTATTTGTTCATATTAAGATTTCCTAAAATGATACAAAGAGTATCCAAAGTAATGATTTGTGAACTTGTGAATTGCAAATTAATATGCCACAACTTTCTTACTAGTACTGCAGTATCTTTACATGTTCTAACACTACCAATCGCCATGCTTCGAATCCTTCCCGTCTTCCCGTTGACAGTCACTTTCAATATACCATTTTAAAACTGATTTGCTAATTTATGATGAAAACACATCTGTCTTGGTTTATACGTCATACACTACGCCATAAACGTCAATTAACAGCACCTAATTAATAGCGCTTTTTATAAAACACTATTATTTATATCAAATAACAGCGTTTTATTTTTTATTGCTGATAAAAAGCATCTTTCAATAAAACTGTAGCACTTTAATTTTATTTACGAATTGACATACACGACATTCCCAGTTCCAGACTTGCACTCCTTCCCACCCCTTTCTTCCTTCTATCTCCCACTACTTTCGGTTGGTTACACACTTACACCTTCCTTCTCATTCTCTCCACAATCTCAATTACTCAATCAAATTCATCAAACAAAAAAGAAAATGTCTCTCTCGAAAACTGCATCTGCATCTGATGCTTCCGTTCACTCCACTCTCTCTTCCAGATTTGTTCGGGCCTATCTACCCAGGTATTATTTTTTATCCATACAATCTGAAGATTATATCTCTATCGTTGATCATATTTGTGGTAAATTAATTTTGATTTTGATTTTGTAATTGGAAAATTGGTTAAGATTTCAGATAGATCGATACCGATGGAAGCAGCTTATCAAATCCAAGGTTGAATTTGGCTAAATTGAAGGATTTCCTTCAATCTAAAACTAGGGTTTCTTAATTGGGCTTCTTCTCTGTCGACTTCTACTTCTTATCTAGGGCACATAGTTCCCGACGGATGTGTGGTTGAATTATCAATTGTGAGTATGTATTTTAAATTAGCAATTTAATTTTTCTTTCCAGGTTTTTATCAATTGTAACTAATTTTTCTAGTTTCATATAACAATTTGATATCCTGGTTTACCATTCTTCACACTCGATGTTAGAGATTTGCTTGGTTTCTGATAATATGATTTCAGAAATATTCTTTTAGGAATTAGACCTTAACTATCAGTTGTTGTTGCAACTTTGTTGTTGTTGTAATTGTTGTGTTTGTTGTTAGTTGATGTTGTTGAAGGTGTCATTTTTCATATGTTTGTGTTATTGTGTAGTCACAACTCACAATTTCTTCTTGTTTCTCAGCTATCCAAGTGCTTAACGGTTGTGGATCAAAGGGAAATTAGCACTAACAATAAAATCTATGCTGACTAGTTTGGGGATTTCATATGATTGTAGGTGATAGATACACCAAGTAGCTTTTTGAGCAAAGAAGAATTCAAGAATACTATCTAATGTTTGACACTGAGTTTTTGTTCATGAGCTGGTGAGTGTTCTATCTTTGATTAGTGTTTATAATGTATTTGCCTCAAAACAAATAGCAGGTCCATGGTGGTTATTGCATATAGTTTTAACTTTTAAGATGGGTTTGAGGAACTCTAATGTATCCGGTTCCGAATATGATTGGGTTTGGATGAAGGATATTCTTTAATTTGTCTCATGTTAATACAAGATTGTCTGAATTGCATTTTTACATTTCAATCTGCCTAGTTTCTTCTCTAATTTTTTCTGCATTCCGTCTCTGTCTGACCCCTATTCTTCCAACCTTGAATTGAATGTTGCCTTTGTTACTTTTTGAGTTTTATATGAGTGGCAACTGGCAAGATGAACGTATAGTCGTTAGCGCTAGAATTTCCACTAACACAATACTGCAAACCTATATGTATGTGGTGGTGCAAGCTGTTTTAAGGAGCATATTTGAATTTTGCTATTTATGCTGAATTTGAGTCAAATTTTGAAATGTTGTATGTGGGTTAGATATTGAAACATTCACGATTCAGTAGTTCTGTATGTTATATAATGTGGGCAGCATGTCATTTTTTGCTGCTTCTTCCTCTGCAATGATTCTTTGGTTCTTCTAGGGTCCTACCTCAAAGGGAGAAATTTTACTAAGTAAATTTTTTTGTATAATACAATTATTGGTCTGTTTACTTTCATCTTAAGTGGTATACCTGTAGTGAGTCCATCTATAGTTCTGCATCACCTTCATGGGACGCTCTGATCCAAGTTCTTAAGAGATTCGTGTTTCTATTTTCTAGCCAAGAAAGGGTGCAACTTTAATTTGTTAACCATAGTCCATACAAGTTCCCTCCATAGATGTTGGTCTCTCGTACAATGAAAACATGGGTAAAAGGAGGGGATGTGGGTGTTGGGGCGGGGGGTGGTTAGCCACTTGCGGTGAGAGTCAATGCCAGAGATTTGAGGTCAACACTAGAAAACCGGAAAAATTTCCTTCCTTGCAACCAAAACCATTTATAAGGGCCTTAATTTGCCACCTTGTTTTTTACAGGGTCCTTTCTGACAAAAGTGTGTTTATAAAGGTCATATATGAGAAAGTTTCCTTAGAAAAAGATCTCTCATAGTTAACAAATTTAAAGGTAAACGATTTTCCCAACCCCTTCGGGATTCTCAAAAACTTAGATGTAATGATGAGGTGGAAAGCAGTAGTTTCGGAGTGATGGTAAATCATATCCAGAGTAACTGTTGTAGGTGTCAGAGGCTCAGAGCTGTGAGTTGTGTTTCCTTGCAAGTTTGGGGCACATGTATTAGTTTCGGGCACATGTATTAGTCATATTCAGTTTGAATAATTAAGTGGAGTTTCAGCCTCTCAGGTTCTCAGTATCATCTAAACCAGTTTAAATGAGGTCTTAATTCATTGCCTCCTAGATATTTTGTCCTTTGAATTTCCCAGGAAAATTCTTTTCTTCACACTTATTTTTTTTAAATGTCAAAGGTTGTTAGTCATACTTAGAAAACTTGAAGGGGTATGAATTTTAATTTGAAGGCATCAAGGGGTACCTGCAATTAAAACGATCTTAAGAACCAGTTTATTCAAAATAATTCAATAAGAAAGAAGCAAGACATTAGAGCATATACTGGAGAATCTTGGAATAGTTCGTTTCAGTTAGAAATGGATCTGAAAACAGTCTTCAGGCTATCTGACGTAAAACTTATTAAACTGTTTCAGGGTATAAGAACGGGGGAGTTAGATGCTGAAGGTCTTGAGCTGCTTCAGCAACGTCGTCGTTTCGAAGAGCCTTATGAGACGGTTGTGAGATTAATTCCAATAATATCAGATGTTTATCAAGTGATTATATGAGATTAAAAGGGTTGGGAGAAGAAACTATTGTTTATGAAGCCTTTGATAAAGGGAAGAAACCTTGGATTGATCAATTGAATCTTAGAATAGCACCCACTAAACTTCATTTGTAGCTAGGTACAAGGGTGATGCTACTAAAGAACTTAAGTCTGAAGGGCAGATTGGTGAATGGTACTACTGGTACAATTACAGGTTTTAAAAAGTCACGTAAGAGCGATGTTGCGAAGATATGTGAACATAAACTTTTGCCATTTTGTAATTTTAGTGTGTTAAATTTAAGTTAATAGAATTATACTTCCTCCGTCTTTTAATACTCGCAACGTTTGTTAGTTTCACGCATGCCAATGCACAACTTTGATCATTTATATCTTAAATTCTCTTTATGCAAAAATTATAAAAAGTTAATATTTTGAAAATACACGTTGAGACGAATCTAACAAGATCTCACATGACTATGTTTTATCTTATATAAAAAGCACTAAGAATAGTCAAAGTAGATTATATGAATAGTGGCAAAAGTCCAAACGTTGCGAGTATTAAAAGACGGAGGAAGTATAACATTTATAGTTCTTTGTTTTTTTCGAAGATAATAGATTGTTGTATATTATTTTTAAGTTATGAGACAGTGAGACGCACATTTGATATGATAGAAATGAAATTAGACCGTATATATCA

mRNA sequence

ATGACCACTCTATCCCCAAGATTGGCATCATCCCAATCATCAACTACTCATAAATATGTTATCACCGTCGAGGACCATAAAAAGTTCCAGACTTGCACTCCTTCCCACCCCTTTCTTCCTTCTATCTCCCACTACTTTCGGTTGGTTACACACTTACACCTTCCTTCTCATTCTCTCCACAATCTCAATTACTCAATCAAATTCATCAAACAAAAAAGAAAATGTCTCTCTCGAAAACTGCATCTGCATCTGATGCTTCCGTTCACTCCACTCTCTCTTCCAGATTTGTTCGGGCCTATCTACCCAGTTTTTGTTCATGAGCTGGGTATAAGAACGGGGGAGTTAGATGCTGAAGGTCTTGAGCTGCTTCAGCAACGTCGTCGTTTCGAAGAGCCTTATGAGACGGTTGTGAGATTAATTCCAATAATATCAGATGTTTATCAAGTGATTATATGAGATTAAAAGGGTTGGGAGAAGAAACTATTGTTTATGAAGCCTTTGATAAAGGGAAGAAACCTTGGATTGATCAATTGAATCTTAGAATAGCACCCACTAAACTTCATTTGTAGCTAGGTACAAGGGTGATGCTACTAAAGAACTTAAGTCTGAAGGGCAGATTGGTGAATGGTACTACTGGTACAATTACAGGTTTTAAAAAGTCACGTAAGAGCGATGTTGCGAAGATATGTGAACATAAACTTTTGCCATTTTGTAATTTTAGTGTGTTAAATTTAAGTTAATAGAATTATACTTCCTCCGTCTTTTAATACTCGCAACGTTTGTTAGTTTCACGCATGCCAATGCACAACTTTGATCATTTATATCTTAAATTCTCTTTATGCAAAAATTATAAAAAGTTAATATTTTGAAAATACACGTTGAGACGAATCTAACAAGATCTCACATGACTATGTTTTATCTTATATAAAAAGCACTAAGAATAGTCAAAGTAGATTATATGAATAGTGGCAAAAGTCCAAACGTTGCGAGTATTAAAAGACGGAGGAAGTATAACATTTATAGTTCTTTGTTTTTTTCGAAGATAATAGATTGTTGTATATTATTTTTAAGTTATGAGACAGTGAGACGCACATTTGATATGATAGAAATGAAATTAGACCGTATATATCA

Coding sequence (CDS)

ATGACCACTCTATCCCCAAGATTGGCATCATCCCAATCATCAACTACTCATAAATATGTTATCACCGTCGAGGACCATAAAAAGTTCCAGACTTGCACTCCTTCCCACCCCTTTCTTCCTTCTATCTCCCACTACTTTCGGTTGGTTACACACTTACACCTTCCTTCTCATTCTCTCCACAATCTCAATTACTCAATCAAATTCATCAAACAAAAAAGAAAATGTCTCTCTCGAAAACTGCATCTGCATCTGATGCTTCCGTTCACTCCACTCTCTCTTCCAGATTTGTTCGGGCCTATCTACCCAGTTTTTGTTCATGAGCTGGGTATAAGAACGGGGGAGTTAGATGCTGAAGGTCTTGAGCTGCTTCAGCAACGTCGTCGTTTCGAAGAGCCTTATGAGACGGTTGTGAGATTAATTCCAATAATATCAGATGTTTATCAAGTGATTATATGA

Protein sequence

MTTLSPRLASSQSSTTHKYVITVEDHKKFQTCTPSHPFLPSISHYFRLVTHLHLPSHSLHNLNYSIKFIKQKRKCLSRKLHLHLMLPFTPLSLPDLFGPIYPVFVHELGIRTGELDAEGLELLQQRRRFEEPYETVVRLIPIISDVYQVII
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo07892Spo07892gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo07892.1Spo07892.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo07892.1.CDS.4Spo07892.1.CDS.4CDS
Spo07892.1.CDS.3Spo07892.1.CDS.3CDS
Spo07892.1.CDS.2Spo07892.1.CDS.2CDS
Spo07892.1.CDS.1Spo07892.1.CDS.1CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo07892.1.utr3p.1Spo07892.1.utr3p.1three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo07892.1.exon.4Spo07892.1.exon.4exon
Spo07892.1.exon.3Spo07892.1.exon.3exon
Spo07892.1.exon.2Spo07892.1.exon.2exon
Spo07892.1.exon.1Spo07892.1.exon.1exon


Homology
[Close]
BLAST of Spo07892.1 vs. NCBI nr
Match: gi|902166639|gb|KNA07259.1| (hypothetical protein SOVF_173520 [Spinacia oleracea])

HSP 1 Score: 65.5 bits (158), Expect = 9.300e-8
Identity = 34/41 (82.93%), Postives = 36/41 (87.80%), Query Frame = 1 

		  

Query: 109 GIRTGELDAEGLELLQQRRRFEEPYETVVRLIPIISDVYQV 150
           GIRTGELDAEGLELLQQRR FEEP ETVVRL P I+DV +V
Sbjct: 268 GIRTGELDAEGLELLQQRRCFEEPDETVVRLFPRIADVNRV 308
[Close]
BLAST of Spo07892.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QJ30_SPIOL (ATP-dependent DNA helicase OS=Spinacia oleracea GN=SOVF_173520 PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 6.500e-8
Identity = 34/41 (82.93%), Postives = 36/41 (87.80%), Query Frame = 1 

		  

Query: 109 GIRTGELDAEGLELLQQRRRFEEPYETVVRLIPIISDVYQV 150
           GIRTGELDAEGLELLQQRR FEEP ETVVRL P I+DV +V
Sbjct: 268 GIRTGELDAEGLELLQQRRCFEEPDETVVRLFPRIADVNRV 308
The following BLAST results are available for this feature:
BLAST of Spo07892.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 1
Match NameE-valueIdentityDescription
gi|902166639|gb|KNA07259.1|9.3e-882.9hypothetical protein SOVF_1735... [more]
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BLAST of Spo07892.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0K9QJ30_SPIOL6.5e-882.9ATP-dependent DNA helicase OS=... [more]
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BLAST of Spo07892.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo07892.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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