Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.CAATCAACTCCCACTTCTCACCTTTTTTTTATTTCTTTTTTCAATTATTCTAAAATGTCATGTTCTCATTGTATTGCGTTTTCACTCTTTTATATTTGCCTCAAAATCTGTGCCTTTTCTTCTCAGCTAAAACCACACCGCTTTACTCTTCTGTAGCCTCAATCCAAAATTCCAAACACAGCTAGATTTGCAGTTTTCTTCAGACAAAATTTGAGCGAACAAAATGGGAGGAGGAGGAAATGGGGGTGTTGCTTTTCTCAAGGTTGTGGTTCAGAACTTTGACATTCTTGCTGGGTTTGTCCTTCTTTCTCTCTCCTCTCATCTCTTTTCCTGTAAATTTACCATCAAATGCTTGGAATTTGTTGTTTTATGCACTAATTTTTACAAATTACGGTCACATAATTACTCCAGTAAATGAAAAAGATTCAAACTTAGCCTCATTTTGTTGCTCAAATTCATGTTTTTTTCTGTTAAATTGTGTGAATTTGGAATGTGGGGATTATTATTGATCTTAATTGTATAATTCTTGACTACCTAACTGTTTGTTTTGTTGTTAGATTCCATCCTTACCTCATGTTGTTGTTCTGATTGATGGGATTTCCGTTTCATTGTTGTGAATCATGGGATTTTGTTTATTTGTCTGAATTTGGAGTGTGGAGCTTATTGTTGATGTTAATTCTATAAATTTGTGGCAACTCAATTATTTGTTTTGTTGAAAGATTTCATGTTTACCTCATTTTCTTGCTCAGATTCATGGGTTTTCTGTTTCATTGCTACGTACTAACCAACTTGATGCATGATTTTGTCATGAATTCCGAAATTAATACTCCGTACTGAAGGAATGTATATAGTGCTTATAGCCCTCAACACTCATCATTATTGTTGATTTTTCTCTTTGATCGTTTCTACTTGGATGTATTTGTATCTAAAATAAGGTTTGTTTTTGTTTGTTGCAGGCCTGTGGTTAGTCTTGTTTATCCCCTGTAAGTTTTTTTTAAATATATATATGTTACGTATTTAGGCTCCGTTTGGTAGGGCGTAAAACGTTTTCATGGAAAACGATTTTCCCCTTCTCAATCATTTTACGTTGTTTGGTTGGGTAAGGGATGTAAAACAATTTTCCATGACTCTATCAAATGTGGAAAACCCTTTTCCATTTGAAAGGGAGGGAAACCATTTTTCCTTCTTTCCTCCTTACCTCCCTCTCCTTTCTTCCCTCAATCTTCACCATTTTCTCCCATTTTCCTTTAAGTTACCAAACAAAGGAAAACTAGTTTGAAATTGTGTTTTCCCTTGAAAAATGTTTTCCATGGAAAATCATTTTACAAAGAAAACGTTTTACGCCCTACCAAACGGAGCTTTATTTTCAAAATGTTTTGCCATATATTTGAGTACTTATTTCATGGTGAAGCTAAAGAAAAAGTGGAACAGAGAAAAACTGCCTGATCATCAATCAATCCCGAGGGTTAGGCATAGAGATGGGAAAGATGGTAACTATGTAACAGTTAATCTGATACAGCAGTTTGACTCTTCATTTTGCCTCAAAATAATTGTATCTGTATTGGGTACTCAGACAGTCAGACATGAAGCCCAAATTGACAGTTTGATTCAGACCTGAAACGGCTGATAAGTTGAGTCCAATTTCGCAAGTATATGTGTCGAACGTGGGCTTCCAATTCCAAGTACTTAAGCACAAGTCAAAGTACTATGGTAGAATTAAACACGAACGAATTTATGTGTTATATTCGTCTATTTACACAGTAGAAGCCCCATATGTCTTGGTTGACTTACACGATTAAAGATTTAATTATGATTTTTTGATAGGTATGCATCAATCAGAGCTATTGAAACCAAGTCTCCTATTGATGATCAACAATGGTTGACTTATTGGATTCTATATTCCATGATCACACTTTTTGAGCTCACCTTTGCAAAAGTTATTGAATGGTAAGACCGTAAGATTCCATTGCATTGATCTCCTTTCTTTCGCAAATTTATTTTAGGTTTTTTATGATGCTATGATAAGTAAATAAAAAATAGTGGATGAAATAAGCAATCTTAAGTTTGTCTTTAATCTTCTGTGCTATTGATATTCGGATTTGTCTGATCCTGCCCATGGAATGTGTCGGTTACTTCTTATGAAGTACGTTCACCATGATTCTATCCTATTCCGTACTGATTTCTTTGTTAAATTTCTCTCTTTGAACAAAGGTTGTACGCGCATGAATAGTATGACATGTAACAACAATCTTTCACTAAATTTGTATCCTGATGCTTTGAACAAAGCTTAACTTTGAGTAGGTTAGGACTAGCTAGTCGGATGTATGTTGCCTTACCGGAGGTTAGGAGCAATCCTGTGTACGTTGCCTTACGGATATACCTCTGTGATAACAGAGAAGCTATTTCCACTCGTCCCTTAGTTTGATATGTAGCAATTGTTCGCAACTTCACATTTTATAAGGAGTGATATGAAAAAGAATTGTAGACAGTTTAATGAGCCATTTTAATATAGTCAACTATAGTCCAAACTTGACAATGAATGCGCACTACAGTGGAGTTGGACATATAAAAGGTAGTCGGTACTCTATATATTAGTAGGATAGATGACAATCAATCGTTTAAGTATCACTGTATCAGTACAAGTCATGTGGTGATTTGGCCATCCACACCAAAGTTGTTATCATGTTAAATATCTGGAATAAAGTCTTGAGTTTGATATTAGTTAGGTGCTTTATATACGTACATATGGTTTTCAGAAAATTTTCAAATATCTTGAGTAAGCAGTAACTTTGACCGGTTTGCTTACAGAAATCATGTGTTTGGTCCTTCGGATTTGGCAATTTTTTGGCCTTAAGAGTTACAGATAGCATTTTCTGTAGTGTCAACTGTCAAGTCTTCACCATCTAAAGATTGTTTGGGAAAGAGGGGACTGTAAAAAAACCAATAAATGAGCAAAGAAAATGCGTGATTTCTTGGGGGCATATTATGCAGTATGAAAAGTGAGAACCGTATAGGTCATAGAACCAGTGTGTGGTCTGGTTGTCTAAAAATTCCACATTGCATCAGAAAATACACAGCTTGCCTCAGTTTATGTAAGTTTTAAATCTGTTTACGTCAATGTATCATCTTCCAGCCTTTTCTCTTTCTGAAGAACACGTTTCTTTCCTTTTCTTCAGTCTTTTGTGTTTCTGAAGACATTCTAGTAGTCAAGACTAGTACAACAGCTTTAACTGTCTGTCTATCCTCCTAGTTGGTGTTCTATTATCATTCGAAGTAACTACTCGTGTAGTGACAGATCATAAAACTCACAGATACCCGAAAATGAATCATATCATGATATCCAGATAATTTTATCTAATCGGGAGTTTATACTTAATGAAATTGTTGAATTCATATTTGCAGGATCCCGATCTGGTCATATGCAAAGCTGATATTGACTTGCTGGCTGGTCATACCTTATTTTAATGGGGCAGCATATGTGTATGAGCATTTTGTGAGACCAACATTTGTCAATGCCCAGAATCGTACTGTTAATATCTGGTATGTCCCGAGGAAGAAGGATGTTTTTAATAAGAAGGATGATATTATAACTGCAGCAGAGAAATACATACAGGAGAATGGAACAGATGCTTTCCGAGATCTAATTGACAAGGTAAACAATACACCACCAAAAATAATCTTTCACTTGTGGATGTTCCACTATCTACAATTTGAACTCTTAGAGCATGTTTGGTATGGAGTTTTAAGTGATGGAAATGGAATCAATTAAGTATTTCCATTATCTAATGTTATGGTACGAGGGGAGTGGTAACACAATCCATTTTCTAAAGGTAACTATCACAGTATCACCACAATTTGTTACCTCTCCCAACCTATTGGTAATAACATTGTTAGCCTCCTCAATCCCCAATTTGTTATAAGTGATTCATTTCCTAAGGTATAACAAACAACTAATATTGGTAATAGCTAACAGTCTAACACTACCCTTTCCCCTTATTTATTTCCTTTCCTAAGTTTATACCAAACATGCCCTTAGTTGTTTAGATACACCACTACCCTTGAAGTTAAGTATAATTAACTGACTTAAAATTTCCCATAAATTACATGTCTTGAGGAATTGAATTAACCTAATGTAATGCATTTGTTCTGTTTATGTTTTTGATAGGCTGATTACAGTGGTATGAAGCCAAGGACTGGCTACGGAATATTTGAGAATGAGCACCACTACTGA CAATCAACTCCCACTTCTCACCTTTTTTTTATTTCTTTTTTCAATTATTCTAAAATGTCATGTTCTCATTGTATTGCGTTTTCACTCTTTTATATTTGCCTCAAAATCTGTGCCTTTTCTTCTCAGCTAAAACCACACCGCTTTACTCTTCTGTAGCCTCAATCCAAAATTCCAAACACAGCTAGATTTGCAGTTTTCTTCAGACAAAATTTGAGCGAACAAAATGGGAGGAGGAGGAAATGGGGGTGTTGCTTTTCTCAAGGTTGTGGTTCAGAACTTTGACATTCTTGCTGGGCCTGTGGTTAGTCTTGTTTATCCCCTGTATGCATCAATCAGAGCTATTGAAACCAAGTCTCCTATTGATGATCAACAATGGTTGACTTATTGGATTCTATATTCCATGATCACACTTTTTGAGCTCACCTTTGCAAAAGTTATTGAATGGATCCCGATCTGGTCATATGCAAAGCTGATATTGACTTGCTGGCTGGTCATACCTTATTTTAATGGGGCAGCATATGTGTATGAGCATTTTGTGAGACCAACATTTGTCAATGCCCAGAATCGTACTGTTAATATCTGGTATGTCCCGAGGAAGAAGGATGTTTTTAATAAGAAGGATGATATTATAACTGCAGCAGAGAAATACATACAGGAGAATGGAACAGATGCTTTCCGAGATCTAATTGACAAGGCTGATTACAGTGGTATGAAGCCAAGGACTGGCTACGGAATATTTGAGAATGAGCACCACTACTGA ATGGGAGGAGGAGGAAATGGGGGTGTTGCTTTTCTCAAGGTTGTGGTTCAGAACTTTGACATTCTTGCTGGGCCTGTGGTTAGTCTTGTTTATCCCCTGTATGCATCAATCAGAGCTATTGAAACCAAGTCTCCTATTGATGATCAACAATGGTTGACTTATTGGATTCTATATTCCATGATCACACTTTTTGAGCTCACCTTTGCAAAAGTTATTGAATGGATCCCGATCTGGTCATATGCAAAGCTGATATTGACTTGCTGGCTGGTCATACCTTATTTTAATGGGGCAGCATATGTGTATGAGCATTTTGTGAGACCAACATTTGTCAATGCCCAGAATCGTACTGTTAATATCTGGTATGTCCCGAGGAAGAAGGATGTTTTTAATAAGAAGGATGATATTATAACTGCAGCAGAGAAATACATACAGGAGAATGGAACAGATGCTTTCCGAGATCTAATTGACAAGGCTGATTACAGTGGTATGAAGCCAAGGACTGGCTACGGAATATTTGAGAATGAGCACCACTACTGA MGGGGNGGVAFLKVVVQNFDILAGPVVSLVYPLYASIRAIETKSPIDDQQWLTYWILYSMITLFELTFAKVIEWIPIWSYAKLILTCWLVIPYFNGAAYVYEHFVRPTFVNAQNRTVNIWYVPRKKDVFNKKDDIITAAEKYIQENGTDAFRDLIDKADYSGMKPRTGYGIFENEHHY Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Homology
BLAST of Spo08162.1 vs. NCBI nr
Match: gi|902203654|gb|KNA14634.1| (hypothetical protein SOVF_105640 [Spinacia oleracea]) HSP 1 Score: 360.9 bits (925), Expect = 1.300e-96 Identity = 175/176 (99.43%), Postives = 175/176 (99.43%), Query Frame = 1
BLAST of Spo08162.1 vs. NCBI nr
Match: gi|731367632|ref|XP_010695713.1| (PREDICTED: HVA22-like protein a [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 312.0 bits (798), Expect = 6.700e-82 Identity = 150/175 (85.71%), Postives = 163/175 (93.14%), Query Frame = 1
BLAST of Spo08162.1 vs. NCBI nr
Match: gi|703082840|ref|XP_010092056.1| (hypothetical protein L484_005307 [Morus notabilis]) HSP 1 Score: 276.6 bits (706), Expect = 3.100e-71 Identity = 131/172 (76.16%), Postives = 155/172 (90.12%), Query Frame = 1
BLAST of Spo08162.1 vs. NCBI nr
Match: gi|255540991|ref|XP_002511560.1| (PREDICTED: HVA22-like protein a [Ricinus communis]) HSP 1 Score: 272.3 bits (695), Expect = 5.900e-70 Identity = 128/157 (81.53%), Postives = 148/157 (94.27%), Query Frame = 1
BLAST of Spo08162.1 vs. NCBI nr
Match: gi|802652962|ref|XP_012080245.1| (PREDICTED: HVA22-like protein a [Jatropha curcas]) HSP 1 Score: 269.6 bits (688), Expect = 3.800e-69 Identity = 129/155 (83.23%), Postives = 146/155 (94.19%), Query Frame = 1
BLAST of Spo08162.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R6R9_SPIOL (HVA22-like protein OS=Spinacia oleracea GN=SOVF_105640 PE=3 SV=1) HSP 1 Score: 360.9 bits (925), Expect = 8.800e-97 Identity = 175/176 (99.43%), Postives = 175/176 (99.43%), Query Frame = 1
BLAST of Spo08162.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BBZ9_BETVU (HVA22-like protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g126720 PE=3 SV=1) HSP 1 Score: 312.0 bits (798), Expect = 4.700e-82 Identity = 150/175 (85.71%), Postives = 163/175 (93.14%), Query Frame = 1
BLAST of Spo08162.1 vs. UniProtKB/TrEMBL
Match: W9RBT9_9ROSA (HVA22-like protein OS=Morus notabilis GN=L484_005307 PE=3 SV=1) HSP 1 Score: 276.6 bits (706), Expect = 2.200e-71 Identity = 131/172 (76.16%), Postives = 155/172 (90.12%), Query Frame = 1
BLAST of Spo08162.1 vs. UniProtKB/TrEMBL
Match: B9R985_RICCO (HVA22-like protein OS=Ricinus communis GN=RCOM_1514800 PE=3 SV=1) HSP 1 Score: 272.3 bits (695), Expect = 4.100e-70 Identity = 128/157 (81.53%), Postives = 148/157 (94.27%), Query Frame = 1
BLAST of Spo08162.1 vs. UniProtKB/TrEMBL
Match: A0A067KG74_JATCU (HVA22-like protein OS=Jatropha curcas GN=JCGZ_11611 PE=3 SV=1) HSP 1 Score: 269.6 bits (688), Expect = 2.700e-69 Identity = 129/155 (83.23%), Postives = 146/155 (94.19%), Query Frame = 1
BLAST of Spo08162.1 vs. ExPASy Swiss-Prot
Match: HA22A_ARATH (HVA22-like protein a OS=Arabidopsis thaliana GN=HVA22A PE=2 SV=1) HSP 1 Score: 245.7 bits (626), Expect = 3.700e-64 Identity = 115/169 (68.05%), Postives = 141/169 (83.43%), Query Frame = 1
BLAST of Spo08162.1 vs. ExPASy Swiss-Prot
Match: HA22C_ARATH (HVA22-like protein c OS=Arabidopsis thaliana GN=HVA22C PE=2 SV=1) HSP 1 Score: 194.5 bits (493), Expect = 9.800e-49 Identity = 94/175 (53.71%), Postives = 132/175 (75.43%), Query Frame = 1
BLAST of Spo08162.1 vs. ExPASy Swiss-Prot
Match: HA22B_ARATH (HVA22-like protein b OS=Arabidopsis thaliana GN=HVA22B PE=2 SV=2) HSP 1 Score: 169.5 bits (428), Expect = 3.400e-41 Identity = 86/170 (50.59%), Postives = 120/170 (70.59%), Query Frame = 1
BLAST of Spo08162.1 vs. ExPASy Swiss-Prot
Match: HA22F_ARATH (HVA22-like protein f OS=Arabidopsis thaliana GN=HVA22F PE=2 SV=1) HSP 1 Score: 130.2 bits (326), Expect = 2.300e-29 Identity = 64/152 (42.11%), Postives = 91/152 (59.87%), Query Frame = 1
BLAST of Spo08162.1 vs. ExPASy Swiss-Prot
Match: HA22E_ARATH (HVA22-like protein e OS=Arabidopsis thaliana GN=HVA22E PE=2 SV=1) HSP 1 Score: 115.9 bits (289), Expect = 4.400e-25 Identity = 53/88 (60.23%), Postives = 65/88 (73.86%), Query Frame = 1
BLAST of Spo08162.1 vs. TAIR (Arabidopsis)
Match: AT1G74520.1 (HVA22 homologue A) HSP 1 Score: 245.7 bits (626), Expect = 2.100e-65 Identity = 115/169 (68.05%), Postives = 141/169 (83.43%), Query Frame = 1
BLAST of Spo08162.1 vs. TAIR (Arabidopsis)
Match: AT1G69700.1 (HVA22 homologue C) HSP 1 Score: 194.5 bits (493), Expect = 5.500e-50 Identity = 94/175 (53.71%), Postives = 132/175 (75.43%), Query Frame = 1
BLAST of Spo08162.1 vs. TAIR (Arabidopsis)
Match: AT5G62490.1 (HVA22 homologue B) HSP 1 Score: 169.5 bits (428), Expect = 1.900e-42 Identity = 86/170 (50.59%), Postives = 120/170 (70.59%), Query Frame = 1
BLAST of Spo08162.1 vs. TAIR (Arabidopsis)
Match: AT2G42820.1 (HVA22-like protein F) HSP 1 Score: 130.2 bits (326), Expect = 1.300e-30 Identity = 64/152 (42.11%), Postives = 91/152 (59.87%), Query Frame = 1
BLAST of Spo08162.1 vs. TAIR (Arabidopsis)
Match: AT5G50720.1 (HVA22 homologue E) HSP 1 Score: 115.9 bits (289), Expect = 2.500e-26 Identity = 53/88 (60.23%), Postives = 65/88 (73.86%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo08162.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo08162.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo08162.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo08162.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
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