Spo08177.1 (mRNA)

Overview
NameSpo08177.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionDisulfide bond formation protein B 2, putative
Locationchr5 : 10866386 .. 10867992 (-)
Sequence length906
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCATCATCATAATTACAACTTTTATTATTTGACTTTTTTTTTTTTTTTGTTGATATTGATTGCTTAGTCTAACCAAACAAACAGTCACCTTCCTTTAGCCCATTAGAAGAATGTATATAAATTGCACCACTTTGCCTTAAAAATGATCAAAGCCAACACCAAAGTCCACCTCAACAAGGGTTTTTTCTACTAGCTTACTCTTACAGTCTAATAATATGGCATTGTCAAAAACTATTCTTGCAATTTTATTAATATTTGTTCTAGGATTTTCTTGCTGCATCATCGGCTCAAATGCTGTCCCAGTAACAAGTAAGGTTTCTACTAATTAGGGCGATAATTATGTTGATCATACTAACTTGTGATTGATTTCTTGTTTATTGTTGATGAACTAATTATAGTTAGTATTTGTGATTTTCTAGGAACAAAGAGTCTAATGCAAGAAAATCTTCCAAGATTTCAAGCTTCCATGAATTCTCATCTGGTATATTTTCATTCACACATTCTCTATTGTTGTCAGACTGATTTACTATGTTTCAATTCCCTGCTTTTTAGGCCTTGTTTGTTTTATACTTCGCATCAAAAACTGAAACTGAGAGTAATATCAAACATGCCATCAATTTGAATTTATACTAGAAATTAAGTGTGCGTTCTATTCACCTGATTTTCACTTATTTTTCCTGAACTTATCTTAAACATGTCATGTCATCATTGTACACAGCTTAAAGGTCGCATGTAGCGACCTTTATCATTTTCGATCTGAATCTATCTGAACTTGTTTGAACTTATCAAAACTTATTTTAGTTATAGATTGTATTTGGTCAACCCTTATTTTTCATGAACTTATCTTATCTGAACTTATTTTTTCCTGAAATAAGTGGAAATAAGGTGAACAGAACAAAGCATAAGTTTTATAAGTTGACAATAAAATCAAACTGAAAATTGAGAGTAATATCAAACACGCCATCAATTTGAATTTATACTAGAAATTGAGTTTTATAAGTTGGCAATAATATCAAACTGAAAACTGACAGCAATATCAAACTGAAAACTGACAGCAATATCAAACTGACAGGATATTGTAGAGGCAATGCAAGAGAGGACTTTCATGGAACAGCGAAAGCTGGCTGATGTCCAGCTCGAAGACTACCCTGGATCTGGAGCTAACAACCGCCACACTCCGGCCAGGCCTTAGTTTGAATGTTTGAGATGCATCCACGAGATGGTCCATGATATACTTCTAGCTTAGGAAGTATATATATTTTCATATGTATACTAATAATTTGTCGTACCACGTGATTTAGTAAGAACGATTGTACGTACGCAGTAGTATATGTAACGTAGTGATTTTTGTTACCACTAATATTATCATGTATGGTAATGCCTAGATACTAATATGTAGCATATGTACGTGTGTAAATATATGAAGTGATAGATATTAGGGAAATGCTATTACTTAATTATCAGCATATAATTGTTGCTGGTCGAGTCTAGCAAAGATATGTACTTGTTATCACAAGGTTATATAAACTTGTGCTGCTTTATTTGTTTGTTATCATAACTCATAAGCTATGAGAATTTTGTAATTGTTGCTTCATTTTATTGACAAA

mRNA sequence

TCATCATCATAATTACAACTTTTATTATTTGACTTTTTTTTTTTTTTTGTTGATATTGATTGCTTAGTCTAACCAAACAAACAGTCACCTTCCTTTAGCCCATTAGAAGAATGTATATAAATTGCACCACTTTGCCTTAAAAATGATCAAAGCCAACACCAAAGTCCACCTCAACAAGGGTTTTTTCTACTAGCTTACTCTTACAGTCTAATAATATGGCATTGTCAAAAACTATTCTTGCAATTTTATTAATATTTGTTCTAGGATTTTCTTGCTGCATCATCGGCTCAAATGCTGTCCCAGTAACAAGAACAAAGAGTCTAATGCAAGAAAATCTTCCAAGATTTCAAGCTTCCATGAATTCTCATCTGGATATTGTAGAGGCAATGCAAGAGAGGACTTTCATGGAACAGCGAAAGCTGGCTGATGTCCAGCTCGAAGACTACCCTGGATCTGGAGCTAACAACCGCCACACTCCGGCCAGGCCTTAGTTTGAATGTTTGAGATGCATCCACGAGATGGTCCATGATATACTTCTAGCTTAGGAAGTATATATATTTTCATATGTATACTAATAATTTGTCGTACCACGTGATTTAGTAAGAACGATTGTACGTACGCAGTAGTATATGTAACGTAGTGATTTTTGTTACCACTAATATTATCATGTATGGTAATGCCTAGATACTAATATGTAGCATATGTACGTGTGTAAATATATGAAGTGATAGATATTAGGGAAATGCTATTACTTAATTATCAGCATATAATTGTTGCTGGTCGAGTCTAGCAAAGATATGTACTTGTTATCACAAGGTTATATAAACTTGTGCTGCTTTATTTGTTTGTTATCATAACTCATAAGCTATGAGAATTTTGTAATTGTTGCTTCATTTTATTGACAAA

Coding sequence (CDS)

ATGGCATTGTCAAAAACTATTCTTGCAATTTTATTAATATTTGTTCTAGGATTTTCTTGCTGCATCATCGGCTCAAATGCTGTCCCAGTAACAAGAACAAAGAGTCTAATGCAAGAAAATCTTCCAAGATTTCAAGCTTCCATGAATTCTCATCTGGATATTGTAGAGGCAATGCAAGAGAGGACTTTCATGGAACAGCGAAAGCTGGCTGATGTCCAGCTCGAAGACTACCCTGGATCTGGAGCTAACAACCGCCACACTCCGGCCAGGCCTTAG

Protein sequence

MALSKTILAILLIFVLGFSCCIIGSNAVPVTRTKSLMQENLPRFQASMNSHLDIVEAMQERTFMEQRKLADVQLEDYPGSGANNRHTPARP
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo08177Spo08177gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo08177.1Spo08177.1-proteinpolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo08177.1.utr5p.1Spo08177.1.utr5p.1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo08177.1.CDS.3Spo08177.1.CDS.3CDS
Spo08177.1.CDS.2Spo08177.1.CDS.2CDS
Spo08177.1.CDS.1Spo08177.1.CDS.1CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo08177.1.utr3p.1Spo08177.1.utr3p.1three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo08177.1.exon.3Spo08177.1.exon.3exon
Spo08177.1.exon.2Spo08177.1.exon.2exon
Spo08177.1.exon.1Spo08177.1.exon.1exon


Homology
[Close]
BLAST of Spo08177.1 vs. NCBI nr
Match: gi|902228453|gb|KNA21107.1| (hypothetical protein SOVF_046290 [Spinacia oleracea])

HSP 1 Score: 177.2 bits (448), Expect = 1.300e-41
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 1 

		  

Query: 1  MALSKTILAILLIFVLGFSCCIIGSNAVPVTRTKSLMQENLPRFQASMNSHLDIVEAMQE 60
          MALSKTILAILLIFVLGFSCCIIGSNAVPVTRTKSLMQENLPRFQASMNSHLDIVEAMQE
Sbjct: 1  MALSKTILAILLIFVLGFSCCIIGSNAVPVTRTKSLMQENLPRFQASMNSHLDIVEAMQE 60

Query: 61 RTFMEQRKLADVQLEDYPGSGANNRHTPARP 92
          RTFMEQRKLADVQLEDYPGSGANNRHTPARP
Sbjct: 61 RTFMEQRKLADVQLEDYPGSGANNRHTPARP 91
[Close]
BLAST of Spo08177.1 vs. NCBI nr
Match: gi|731335001|ref|XP_010678508.1| (PREDICTED: uncharacterized protein LOC104894040 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 106.7 bits (265), Expect = 2.200e-20
Identity = 56/89 (62.92%), Postives = 71/89 (79.78%), Query Frame = 1 

		  

Query: 1  MALSKTILAILLIFVLGFSCCIIGSNAVPVTRTKSLMQENLPRFQASMNSHLDIVEAMQE 60
          MAL+K++L + +I +LGFSC IIG NAVP TRTKSLM  NL  F+AS NSHLD VEAMQ+
Sbjct: 1  MALAKSLLRLFVIVLLGFSC-IIGINAVPTTRTKSLMHGNLASFRASRNSHLDAVEAMQD 60

Query: 61 RTFMEQRKLAD-VQLEDYPGSGANNRHTP 89
             +++RK+   ++L+DYPGSGANNRHTP
Sbjct: 61 GNILKERKMQQTIELQDYPGSGANNRHTP 88
[Close]
BLAST of Spo08177.1 vs. NCBI nr
Match: gi|645269296|ref|XP_008239934.1| (PREDICTED: uncharacterized protein LOC103338502 [Prunus mume])

HSP 1 Score: 63.2 bits (152), Expect = 2.800e-7
Identity = 44/88 (50.00%), Postives = 53/88 (60.23%), Query Frame = 1 

		  

Query: 1  MALSKTILAILLIFVLGFSCCIIGSNAVPVTRTKSLMQENLPRFQASMNSHLDIVEAMQE 60
          MAL+ T+L +L+IF LGFS  II  NAVPVTR  SL    +    A  N  +       E
Sbjct: 1  MALAGTLLHLLVIF-LGFSQLIIRLNAVPVTRIGSLQVHQI----AGNNQLVTTENNFYE 60

Query: 61 RTFMEQRKLADVQLEDYPGSGANNRHTP 89
          +T  E+    DV+L DYPGSGANNRHTP
Sbjct: 61 QTITERM---DVELHDYPGSGANNRHTP 80
[Close]
BLAST of Spo08177.1 vs. NCBI nr
Match: gi|703074802|ref|XP_010089913.1| (hypothetical protein L484_008601 [Morus notabilis])

HSP 1 Score: 61.6 bits (148), Expect = 8.100e-7
Identity = 41/89 (46.07%), Postives = 56/89 (62.92%), Query Frame = 1 

		  

Query: 4  SKTILAILLIFVLGFSCCIIGSNAVPVTRTKSLMQEN----LPRFQASMNSHLDIVEAMQ 63
          S+T+   +L+ VL FS  I  SNAVPVTR + LM  N    LP  Q +++  +   + ++
Sbjct: 3  SRTLFLQVLVIVLCFSHLIF-SNAVPVTRIRGLMHGNQAHDLP--QGTIHKQVTTEKILE 62

Query: 64 ERTFMEQRKLADVQLEDYPGSGANNRHTP 89
          E+T  E+    DV+L DYPGSGANNRHTP
Sbjct: 63 EKTVAERM---DVELHDYPGSGANNRHTP 85
[Close]
BLAST of Spo08177.1 vs. NCBI nr
Match: gi|823145167|ref|XP_012472456.1| (PREDICTED: uncharacterized protein LOC105789633 [Gossypium raimondii])

HSP 1 Score: 59.7 bits (143), Expect = 3.100e-6
Identity = 40/78 (51.28%), Postives = 49/78 (62.82%), Query Frame = 1 

		  

Query: 11  LLIFVLGFSCCIIGSNAVPVTRTKSLMQENLPRFQASMNSHLDIVEAMQERTFMEQRKLA 70
           LL+ +LG S  II SNAVPVTRT +LM  +    Q   N+HL  VE   +   ++ R  A
Sbjct: 109 LLVVLLGLSH-IIFSNAVPVTRTGTLMHGSQVH-QLQENTHLVTVEKSSDGEIIKGRMFA 168

Query: 71  DVQLEDYPGSGANNRHTP 89
           +  L DYPGSGANNRHTP
Sbjct: 169 E--LNDYPGSGANNRHTP 182
[Close]
BLAST of Spo08177.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RQK7_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_046290 PE=4 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 9.200e-42
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 1 

		  

Query: 1  MALSKTILAILLIFVLGFSCCIIGSNAVPVTRTKSLMQENLPRFQASMNSHLDIVEAMQE 60
          MALSKTILAILLIFVLGFSCCIIGSNAVPVTRTKSLMQENLPRFQASMNSHLDIVEAMQE
Sbjct: 1  MALSKTILAILLIFVLGFSCCIIGSNAVPVTRTKSLMQENLPRFQASMNSHLDIVEAMQE 60

Query: 61 RTFMEQRKLADVQLEDYPGSGANNRHTPARP 92
          RTFMEQRKLADVQLEDYPGSGANNRHTPARP
Sbjct: 61 RTFMEQRKLADVQLEDYPGSGANNRHTPARP 91
[Close]
BLAST of Spo08177.1 vs. UniProtKB/TrEMBL
Match: A0A0J8F4Q4_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g114650 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 1.500e-20
Identity = 56/89 (62.92%), Postives = 71/89 (79.78%), Query Frame = 1 

		  

Query: 1  MALSKTILAILLIFVLGFSCCIIGSNAVPVTRTKSLMQENLPRFQASMNSHLDIVEAMQE 60
          MAL+K++L + +I +LGFSC IIG NAVP TRTKSLM  NL  F+AS NSHLD VEAMQ+
Sbjct: 1  MALAKSLLRLFVIVLLGFSC-IIGINAVPTTRTKSLMHGNLASFRASRNSHLDAVEAMQD 60

Query: 61 RTFMEQRKLAD-VQLEDYPGSGANNRHTP 89
             +++RK+   ++L+DYPGSGANNRHTP
Sbjct: 61 GNILKERKMQQTIELQDYPGSGANNRHTP 88
[Close]
BLAST of Spo08177.1 vs. UniProtKB/TrEMBL
Match: W9QJD5_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_008601 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 5.600e-7
Identity = 41/89 (46.07%), Postives = 56/89 (62.92%), Query Frame = 1 

		  

Query: 4  SKTILAILLIFVLGFSCCIIGSNAVPVTRTKSLMQEN----LPRFQASMNSHLDIVEAMQ 63
          S+T+   +L+ VL FS  I  SNAVPVTR + LM  N    LP  Q +++  +   + ++
Sbjct: 3  SRTLFLQVLVIVLCFSHLIF-SNAVPVTRIRGLMHGNQAHDLP--QGTIHKQVTTEKILE 62

Query: 64 ERTFMEQRKLADVQLEDYPGSGANNRHTP 89
          E+T  E+    DV+L DYPGSGANNRHTP
Sbjct: 63 EKTVAERM---DVELHDYPGSGANNRHTP 85
[Close]
BLAST of Spo08177.1 vs. UniProtKB/TrEMBL
Match: A0A0D2QQW7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G097700 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.100e-6
Identity = 40/78 (51.28%), Postives = 49/78 (62.82%), Query Frame = 1 

		  

Query: 11 LLIFVLGFSCCIIGSNAVPVTRTKSLMQENLPRFQASMNSHLDIVEAMQERTFMEQRKLA 70
          LL+ +LG S  II SNAVPVTRT +LM  +    Q   N+HL  VE   +   ++ R  A
Sbjct: 8  LLVVLLGLSH-IIFSNAVPVTRTGTLMHGSQVH-QLQENTHLVTVEKSSDGEIIKGRMFA 67

Query: 71 DVQLEDYPGSGANNRHTP 89
          +  L DYPGSGANNRHTP
Sbjct: 68 E--LNDYPGSGANNRHTP 81
The following BLAST results are available for this feature:
BLAST of Spo08177.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902228453|gb|KNA21107.1|1.3e-41100.hypothetical protein SOVF_0462... [more]
gi|731335001|ref|XP_010678508.1|2.2e-2062.9PREDICTED: uncharacterized pro... [more]
gi|645269296|ref|XP_008239934.1|2.8e-750.0PREDICTED: uncharacterized pro... [more]
gi|703074802|ref|XP_010089913.1|8.1e-746.0hypothetical protein L484_0086... [more]
gi|823145167|ref|XP_012472456.1|3.1e-651.2PREDICTED: uncharacterized pro... [more]
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BLAST of Spo08177.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 4
Match NameE-valueIdentityDescription
A0A0K9RQK7_SPIOL9.2e-42100.Uncharacterized protein OS=Spi... [more]
A0A0J8F4Q4_BETVU1.5e-2062.9Uncharacterized protein OS=Bet... [more]
W9QJD5_9ROSA5.6e-746.0Uncharacterized protein OS=Mor... [more]
A0A0D2QQW7_GOSRA2.1e-651.2Uncharacterized protein OS=Gos... [more]
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BLAST of Spo08177.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo08177.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33474FAMILY NOT NAMEDcoord: 1..91
score: 3.2
NoneNo IPR availablePANTHERPTHR33474:SF6SUBFAMILY NOT NAMEDcoord: 1..91
score: 3.2
NoneNo IPR availablePROFILEPS51257PROKAR_LIPOPROTEINcoord: 1..20
score: