Spo08258.1 (mRNA) | SpinachBase

Overview


Name	Spo08258.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	Pentatricopeptide repeat superfamily protein
Location	chr3 : 96006362 .. 96006703 (-)
Sequence length	342

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGGCGATCAAACCCTTAGCCACAGCCGCCGGATCCCTCCGTGCCAGACTAACTCAAACTCTCCGAACCCGTGGCGGTGGAGGAATCGACAGATGGACAAGCCCAGGTCACCAAGAACGTCCCAACGGCTACCTCTTCAACCGCCCGCCACCACCACCTGGTCAGTCCCGTAAATGGGAAGACTGGGAATTGCCCTGCTACGTCACCAGCTTCCTCACCATTGTCATCCTTGGTGTTGGTCTTACCGCTAAGCCCGATCTCACCCTCGAGACTTGGGCCCATCAGAAAGCCCTCGAACGCCTCCAGGCCCAACAGCTTTCTTCTGACTCCTCTGAGTAA

mRNA sequence

ATGGTGGCGATCAAACCCTTAGCCACAGCCGCCGGATCCCTCCGTGCCAGACTAACTCAAACTCTCCGAACCCGTGGCGGTGGAGGAATCGACAGATGGACAAGCCCAGGTCACCAAGAACGTCCCAACGGCTACCTCTTCAACCGCCCGCCACCACCACCTGGTCAGTCCCGTAAATGGGAAGACTGGGAATTGCCCTGCTACGTCACCAGCTTCCTCACCATTGTCATCCTTGGTGTTGGTCTTACCGCTAAGCCCGATCTCACCCTCGAGACTTGGGCCCATCAGAAAGCCCTCGAACGCCTCCAGGCCCAACAGCTTTCTTCTGACTCCTCTGAGTAA

Coding sequence (CDS)

ATGGTGGCGATCAAACCCTTAGCCACAGCCGCCGGATCCCTCCGTGCCAGACTAACTCAAACTCTCCGAACCCGTGGCGGTGGAGGAATCGACAGATGGACAAGCCCAGGTCACCAAGAACGTCCCAACGGCTACCTCTTCAACCGCCCGCCACCACCACCTGGTCAGTCCCGTAAATGGGAAGACTGGGAATTGCCCTGCTACGTCACCAGCTTCCTCACCATTGTCATCCTTGGTGTTGGTCTTACCGCTAAGCCCGATCTCACCCTCGAGACTTGGGCCCATCAGAAAGCCCTCGAACGCCTCCAGGCCCAACAGCTTTCTTCTGACTCCTCTGAGTAA

Protein sequence

MVAIKPLATAAGSLRARLTQTLRTRGGGGIDRWTSPGHQERPNGYLFNRPPPPPGQSRKWEDWELPCYVTSFLTIVILGVGLTAKPDLTLETWAHQKALERLQAQQLSSDSSE

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo08258	Spo08258	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo08258.1	Spo08258.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo08258.1.CDS.1	Spo08258.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo08258.1.exon.1	Spo08258.1.exon.1	exon

Homology

[Close]

BLAST of Spo08258.1 vs. NCBI nr
Match: gi|902187184|gb|KNA10863.1| (hypothetical protein SOVF_140370 [Spinacia oleracea])

HSP 1 Score: 231.9 bits (590), Expect = 5.600e-58
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 1


		  
Query: 1   MVAIKPLATAAGSLRARLTQTLRTRGGGGIDRWTSPGHQERPNGYLFNRPPPPPGQSRKW 60
           MVAIKPLATAAGSLRARLTQTLRTRGGGGIDRWTSPGHQERPNGYLFNRPPPPPGQSRKW
Sbjct: 1   MVAIKPLATAAGSLRARLTQTLRTRGGGGIDRWTSPGHQERPNGYLFNRPPPPPGQSRKW 60

Query: 61  EDWELPCYVTSFLTIVILGVGLTAKPDLTLETWAHQKALERLQAQQLSSDSSE 114
           EDWELPCYVTSFLTIVILGVGLTAKPDLTLETWAHQKALERLQAQQLSSDSSE
Sbjct: 61  EDWELPCYVTSFLTIVILGVGLTAKPDLTLETWAHQKALERLQAQQLSSDSSE 113

[Close]

BLAST of Spo08258.1 vs. NCBI nr
Match: gi|731324007|ref|XP_010672735.1| (PREDICTED: uncharacterized protein LOC104889254 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 200.3 bits (508), Expect = 1.800e-48
Identity = 99/112 (88.39%), Postives = 103/112 (91.96%), Query Frame = 1


		  
Query: 5   KPLATAAGSLRARLTQTLRTRGGGGIDRWTSPGHQERPNGYLFNRPPPPPGQSRKWEDWE 64
           KPLATAAG+LR+RL QTLRTRGGGG+DRWTSPGHQ+RPNGYLFNR P PPGQSRKWEDWE
Sbjct: 6   KPLATAAGTLRSRLIQTLRTRGGGGLDRWTSPGHQDRPNGYLFNRTPLPPGQSRKWEDWE 65

Query: 65  LPCYVTSFLTIVILGVGLTAKPDLTLETWAHQKALERLQAQQ---LSSDSSE 114
           LPCYVTSFLTIVILGVGL AKPDLTLETWAHQKALERLQAQ     SSDSSE
Sbjct: 66  LPCYVTSFLTIVILGVGLNAKPDLTLETWAHQKALERLQAQAQQISSSDSSE 117

[Close]

BLAST of Spo08258.1 vs. NCBI nr
Match: gi|661886166|emb|CDP10088.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 181.8 bits (460), Expect = 6.700e-43
Identity = 89/114 (78.07%), Postives = 96/114 (84.21%), Query Frame = 1


		  
Query: 1   MVAIKPLATAAGSLRARLTQTLRTRGGG--GIDRWTSPGHQERPNGYLFNRPPPPPGQSR 60
           M + KPLATAAG LRARL+  LRTRGG   G  RW +PGHQERPNGYLFNR PPPPGQSR
Sbjct: 240 MPSPKPLATAAGMLRARLSPALRTRGGDAHGPSRWATPGHQERPNGYLFNRTPPPPGQSR 299

Query: 61  KWEDWELPCYVTSFLTIVILGVGLTAKPDLTLETWAHQKALERLQAQQLSSDSS 113
           KWEDWELPCY+TSFLTIVILGVGL AKPDLTLETWAHQKALERL+ +  +S  S
Sbjct: 300 KWEDWELPCYITSFLTIVILGVGLNAKPDLTLETWAHQKALERLELESAASQDS 353

[Close]

BLAST of Spo08258.1 vs. NCBI nr
Match: gi|698509052|ref|XP_009799759.1| (PREDICTED: uncharacterized protein LOC104245788 [Nicotiana sylvestris])

HSP 1 Score: 180.6 bits (457), Expect = 1.500e-42
Identity = 85/110 (77.27%), Postives = 97/110 (88.18%), Query Frame = 1


		  
Query: 1   MVAIKPLATAAGSLRARLTQTLRTRGGGGIDRWTSPGHQERPNGYLFNRPPPPPGQSRKW 60
           M + KP ATAAG LRAR++  LRTRGG G + +T+PGHQERPNGYLFNRPPPPPGQSRKW
Sbjct: 1   MPSAKPFATAAGMLRARISSGLRTRGGHGPNPFTTPGHQERPNGYLFNRPPPPPGQSRKW 60

Query: 61  EDWELPCYVTSFLTIVILGVGLTAKPDLTLETWAHQKALERLQAQQLSSD 111
           EDWELPCYVTSFLTIVILGVGL AKPDLTLETWAHQ+AL+RLQ + + ++
Sbjct: 61  EDWELPCYVTSFLTIVILGVGLNAKPDLTLETWAHQEALKRLQLESVDAE 110

[Close]

BLAST of Spo08258.1 vs. NCBI nr
Match: gi|1021041287|gb|KZM99068.1| (hypothetical protein DCAR_013570 [Daucus carota subsp. sativus])

HSP 1 Score: 180.3 bits (456), Expect = 1.900e-42
Identity = 88/114 (77.19%), Postives = 97/114 (85.09%), Query Frame = 1


		  
Query: 1   MVAIKPLATAAGSLRARLTQTLRTRGGG-GIDRWTSPGHQERPNGYLFNRPPPPPGQSRK 60
           M + KP ATAAG+LR+RL+ +LR RGGG G  RWTSPGHQE PNGY  NR P PPGQSRK
Sbjct: 270 MASAKPFATAAGTLRSRLSTSLRLRGGGAGPSRWTSPGHQEHPNGYFLNRTPLPPGQSRK 329

Query: 61  WEDWELPCYVTSFLTIVILGVGLTAKPDLTLETWAHQKALERLQAQQLSSDSSE 114
           WEDWELPCYVTSFLTIVILGVGL AKPDLT+ETWAHQKALERL+AQQ++  S E
Sbjct: 330 WEDWELPCYVTSFLTIVILGVGLNAKPDLTIETWAHQKALERLEAQQMAPLSDE 383

[Close]

BLAST of Spo08258.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QVX0_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_140370 PE=4 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 3.900e-58
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 1


		  
Query: 1   MVAIKPLATAAGSLRARLTQTLRTRGGGGIDRWTSPGHQERPNGYLFNRPPPPPGQSRKW 60
           MVAIKPLATAAGSLRARLTQTLRTRGGGGIDRWTSPGHQERPNGYLFNRPPPPPGQSRKW
Sbjct: 1   MVAIKPLATAAGSLRARLTQTLRTRGGGGIDRWTSPGHQERPNGYLFNRPPPPPGQSRKW 60

Query: 61  EDWELPCYVTSFLTIVILGVGLTAKPDLTLETWAHQKALERLQAQQLSSDSSE 114
           EDWELPCYVTSFLTIVILGVGLTAKPDLTLETWAHQKALERLQAQQLSSDSSE
Sbjct: 61  EDWELPCYVTSFLTIVILGVGLTAKPDLTLETWAHQKALERLQAQQLSSDSSE 113

[Close]

BLAST of Spo08258.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CTK8_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g060930 PE=4 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 1.300e-48
Identity = 99/112 (88.39%), Postives = 103/112 (91.96%), Query Frame = 1


		  
Query: 5   KPLATAAGSLRARLTQTLRTRGGGGIDRWTSPGHQERPNGYLFNRPPPPPGQSRKWEDWE 64
           KPLATAAG+LR+RL QTLRTRGGGG+DRWTSPGHQ+RPNGYLFNR P PPGQSRKWEDWE
Sbjct: 6   KPLATAAGTLRSRLIQTLRTRGGGGLDRWTSPGHQDRPNGYLFNRTPLPPGQSRKWEDWE 65

Query: 65  LPCYVTSFLTIVILGVGLTAKPDLTLETWAHQKALERLQAQQ---LSSDSSE 114
           LPCYVTSFLTIVILGVGL AKPDLTLETWAHQKALERLQAQ     SSDSSE
Sbjct: 66  LPCYVTSFLTIVILGVGLNAKPDLTLETWAHQKALERLQAQAQQISSSDSSE 117

[Close]

BLAST of Spo08258.1 vs. UniProtKB/TrEMBL
Match: A0A068UR47_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00030693001 PE=4 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 4.600e-43
Identity = 89/114 (78.07%), Postives = 96/114 (84.21%), Query Frame = 1


		  
Query: 1   MVAIKPLATAAGSLRARLTQTLRTRGGG--GIDRWTSPGHQERPNGYLFNRPPPPPGQSR 60
           M + KPLATAAG LRARL+  LRTRGG   G  RW +PGHQERPNGYLFNR PPPPGQSR
Sbjct: 240 MPSPKPLATAAGMLRARLSPALRTRGGDAHGPSRWATPGHQERPNGYLFNRTPPPPGQSR 299

Query: 61  KWEDWELPCYVTSFLTIVILGVGLTAKPDLTLETWAHQKALERLQAQQLSSDSS 113
           KWEDWELPCY+TSFLTIVILGVGL AKPDLTLETWAHQKALERL+ +  +S  S
Sbjct: 300 KWEDWELPCYITSFLTIVILGVGLNAKPDLTLETWAHQKALERLELESAASQDS 353

[Close]

BLAST of Spo08258.1 vs. UniProtKB/TrEMBL
Match: A0A165YGN5_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_013570 PE=4 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 1.400e-42
Identity = 88/114 (77.19%), Postives = 97/114 (85.09%), Query Frame = 1


		  
Query: 1   MVAIKPLATAAGSLRARLTQTLRTRGGG-GIDRWTSPGHQERPNGYLFNRPPPPPGQSRK 60
           M + KP ATAAG+LR+RL+ +LR RGGG G  RWTSPGHQE PNGY  NR P PPGQSRK
Sbjct: 270 MASAKPFATAAGTLRSRLSTSLRLRGGGAGPSRWTSPGHQEHPNGYFLNRTPLPPGQSRK 329

Query: 61  WEDWELPCYVTSFLTIVILGVGLTAKPDLTLETWAHQKALERLQAQQLSSDSSE 114
           WEDWELPCYVTSFLTIVILGVGL AKPDLT+ETWAHQKALERL+AQQ++  S E
Sbjct: 330 WEDWELPCYVTSFLTIVILGVGLNAKPDLTIETWAHQKALERLEAQQMAPLSDE 383

[Close]

BLAST of Spo08258.1 vs. UniProtKB/TrEMBL
Match: A0A118JWW1_CYNCS (NADH:ubiquinone oxidoreductase, ESSS subunit OS=Cynara cardunculus var. scolymus GN=Ccrd_003207 PE=4 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 3.300e-41
Identity = 85/115 (73.91%), Postives = 96/115 (83.48%), Query Frame = 1


		  
Query: 1   MVAIKPLATAAGSLRARLTQTLRTRGGGGIDRWTSPGHQERPNGYLFNRPPPPPGQSRKW 60
           M + KP + AAG LR+RLT TLR R G G  RWT+PGHQ+RPNGY  NR P PPGQSRKW
Sbjct: 1   MPSAKPFSAAAGMLRSRLTSTLRQRSGDGPSRWTTPGHQDRPNGYFLNRTPLPPGQSRKW 60

Query: 61  EDWELPCYVTSFLTIVILGVGLTAKPDLTLETWAHQKALERLQAQQ--LSSDSSE 114
           EDWELPCYVTSFLTIVILGVGL AKPDLTLETWAHQKA+ERL+AQ+  L++D S+
Sbjct: 61  EDWELPCYVTSFLTIVILGVGLNAKPDLTLETWAHQKAVERLEAQRQILAADDSD 115

[Close]

BLAST of Spo08258.1 vs. TAIR (Arabidopsis)
Match: AT3G57785.1 (unknown protein)

HSP 1 Score: 151.4 bits (381), Expect = 3.400e-37
Identity = 77/117 (65.81%), Postives = 89/117 (76.07%), Query Frame = 1


		  
Query: 1   MVAIKPLATAAGSLRARLTQTLRTRGGG---GIDRWTSPGHQERPNGYLFNRPPPPPGQS 60
           M + KPL  AA +LR R+      R G    G  RW +PGH+ERP GY  NR PPPPGQS
Sbjct: 1   MASTKPLIVAAKTLRNRI----HFRSGSTSTGPSRWATPGHEERPKGYFMNRTPPPPGQS 60

Query: 61  RKWEDWELPCYVTSFLTIVILGVGLTAKPDLTLETWAHQKALERLQAQQLSS--DSS 113
           RKWEDWELPCY+TSFLTIVILGVGL AKPDL++ETWAHQKALERL+ ++L+S  DSS
Sbjct: 61  RKWEDWELPCYITSFLTIVILGVGLNAKPDLSIETWAHQKALERLEMEKLASAGDSS 113

[Close]

BLAST of Spo08258.1 vs. TAIR (Arabidopsis)
Match: AT2G42310.1 (unknown protein)

HSP 1 Score: 143.3 bits (360), Expect = 9.300e-35
Identity = 71/115 (61.74%), Postives = 87/115 (75.65%), Query Frame = 1


		  
Query: 1   MVAIKPLATAAGSLRARLTQTLRTRGGGGIDRWTSPGHQERPNGYLFNRPPPPPGQSRKW 60
           M + + L  AA +LR R+     +   G   RW +PGH+ERP GY  NR PP PGQSRKW
Sbjct: 1   MPSTQSLTVAAKTLRNRIFSRSGSTSAGP-SRWATPGHEERPKGYFMNRTPPAPGQSRKW 60

Query: 61  EDWELPCYVTSFLTIVILGVGLTAKPDLTLETWAHQKALERLQAQQLSS--DSSE 114
           EDWELPCY+TSFLTIVILGVGL AKPDL++ETWAHQKALERL+ ++L++  DSS+
Sbjct: 61  EDWELPCYITSFLTIVILGVGLNAKPDLSIETWAHQKALERLEMEKLATAGDSSD 114

The following BLAST results are available for this feature:

BLAST of Spo08258.1 vs. NCBI nr
BLAST of Spo08258.1 vs. UniProtKB/TrEMBL
BLAST of Spo08258.1 vs. ExPASy Swiss-Prot
BLAST of Spo08258.1 vs. TAIR (Arabidopsis)

BLAST of Spo08258.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902187184\|gb\|KNA10863.1\|	5.6e-58	100.	hypothetical protein SOVF_1403...	[more]
gi\|731324007\|ref\|XP_010672735.1\|	1.8e-48	88.3	PREDICTED: uncharacterized pro...	[more]
gi\|661886166\|emb\|CDP10088.1\|	6.7e-43	78.0	unnamed protein product [Coffe...	[more]
gi\|698509052\|ref\|XP_009799759.1\|	1.5e-42	77.2	PREDICTED: uncharacterized pro...	[more]
gi\|1021041287\|gb\|KZM99068.1\|	1.9e-42	77.1	hypothetical protein DCAR_0135...	[more]

BLAST of Spo08258.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9QVX0_SPIOL	3.9e-58	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8CTK8_BETVU	1.3e-48	88.3	Uncharacterized protein OS=Bet...	[more]
A0A068UR47_COFCA	4.6e-43	78.0	Uncharacterized protein OS=Cof...	[more]
A0A165YGN5_DAUCA	1.4e-42	77.1	Uncharacterized protein OS=Dau...	[more]
A0A118JWW1_CYNCS	3.3e-41	73.9	NADH:ubiquinone oxidoreductase...	[more]

BLAST of Spo08258.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Spo08258.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2


Match Name	E-value	Identity	Description
AT3G57785.1	3.4e-37	65.8	unknown protein	[more]
AT2G42310.1	9.3e-35	61.7	unknown protein	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR31339	FAMILY NOT NAMED	coord: 1..106 score: 9.3

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005739	mitochondrion