Spo08275.1 (mRNA)

Overview
NameSpo08275.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionRNA-binding protein 45
LocationSpoScf_01367 : 4671 .. 12989 (-)
Sequence length1103
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGCACGCGCGGCTCGGCCCAGCAGCGCTGGCACGCGACCCATTGCAAGGGCACTGCCAGCTGCTGGCCTTGCCTTGCTCGCTGGGCCTGGCCTTGCTTCATGCTCGGATGGGCCTGCTTGCTTGGAGGGATGCGCTGCTGTTGCTGCTCGCTTGCACGGGCTTTGCTAGGCGCGGGCCTGGCTTCGTGCTGGGCCCTTGCGTCTAGCAAGCTCGTCCGATGTTTATTTCGTACGTCGTGCTTCCGATTCGTTTTCGGATTAAGGAGTTCATTTCCGATTCGAACAATATTTAATGTTTTCGATTCCGGAATTTATTTCCGTATCGAACAAATATTTAATATTTCTGATTCCGGAATTTATTTCCGATTCCGATAATATTTCCGATTCCGGCAATATTTCCGATTCCGACAATATTTCCGTTTCCGGCAATATTTACGATTCCGGCAATATTTCCATTCCCAATATTATTTTCCGATACGTACCATGTTTCCGTTTCCGGCAACATCTACGACTTGGATAATATTTATATTTCCGATACGATCCATATTCCGTTTCCGGCAATATCATCGTTTCCGGAGTATTCATAATTTGCCTTTTGACGATTTCAGCGCCCACTGGAACCGAGATTCGCCGATTCCGAATATCGATGAATGGAGTATTTAATTCACTTGAATACTTGATCCGTTCACGTACTATTTGTGTGACCCTACGGGTTCAGTCAAGAGTAAGCTGTGGATTAATATTATTAATTCCACTCGAACTGAAGCGGCCTCTAGCTAGGCATTCAGCTCACTTGATCTCACTGAATTATTAACTTGCATCATGAATTAATACTGAACAGCATTTATTAGACATAGAATTGAATGCATACTTGGACCAAGGGCATTATTTCCTTCAATTTCATGTCTTTTAGTCAATGGTTTTTGCCATAATGACCCTATGACGATCCATCAATTGCATTTGCGTTTTTATGTTTTTTTAATAAAATATCCCCCTTTATTTCTTTATTCATTTATCTCTCTTCTATTTATTCTAAAAGTAGAATCGTTTAACTTTAATCATAACTCTTACACCCAATCATACTGAGATTCCATTTTTCTTAATCCCATCCCCGATTCCATATGGGAAGAACATAAGGTAACAAAGGGAGTATCAATAAGGAACAAGGGTGTTCGTAGCCTAAAACGAGATCTAGCAAACACAAGCTAGTAAGATTATGAGAACACAATATATTTCTAATATTACCTTGCAACGGGAAATTTATGTTATTTATCGATTTCATCACCCTTTATAATTGTTCACATAATTAATTTGTTCGATCATGCATAATTAGATATTCTTGACAAATTGGTATATTTTGGTAAGCATCTTGAATAAATCTAAATCACCCTTTTGACATATTGATTAGTCTATAATTATTTATACATTCAAATCAATTCAATAGTAATGTAGACAATGCACCTCCATGCATTGAATCATTACACAAAGTTTTTGGACACTGCATGTATTAGTAACTTTACCCCCGAACCCAATTCTACTATGCGCACGTATGTTGGGGTGATCCCCATACGAAATCACAAGGGAACTTATTGGATTTATGATCAAACATTTGAGCCTTGCATATCTTGCATGTGTGTTACCCTTATATCGCAAGTACCGAGTTTTATTAGTTTTCGGCAACAAGACTAAAACTATATGGCTGATCCATAAACTAATTAAAGTATGATAAGTCCCTTCTTAAATCAAAAATATTCACTCTAACATAACAATGCAAAGCACGCGTTTTCCCCCTAAAAAGGGCGGGTGCGGGCTATTTGACCCCTCCAAGATTGAACATAAGGTTGTATTCCATTTATAATTCTCCTTAATTCTAGCAACATTATCATTTGTCAGTAATACCCTTTACAATTATCTGGTTAGGGGTGTTAATGAGCCGAGCCGAGACCGAGCCCTTATAGGCTCGGCTCGAGCTCGAAACTCATGAGCACATGCTCGGCTAGATCTTGAAGCTCGTCGAGCCAGGAAAATTGGGCTCGAGCTCGAATTTTTTTAATCGAGCTCGATACGCCTAAAACTTTGAGCTCAAAACTTTAAACCGAGCATGGTTTGGCTCGAGGCTCATTAGTCTCGATGAAAGTCTCAACATCAATATTTACATTACACAACCGGTTTTCCTGCCTTTACATAGATTAAAACAAATAATATCTTACCTAAAGTAACTAAAAATATAAATTACCAGACATATTTAAACATGCAAAAAAAAATAAGAGAGAAAATGAATTATCTACATCCTCTAGAACTACAAATGCAAATAAAGATGGGAGGTTGTCGGTCGACGGACCCCGTAGACTTAAGATTCTCCGTTCTTCGGTCGTCGAAGGTGGAAGAGGATCATTGCAGAAGTGCAGAGCAGACAAGAACTTCGCGTGCCGACGGCTAGGATTATTACATTTTTTTTAAGGTGAAGAGTACATTACATTTTTTAAGGTTATATGTTTGGTATTTTGGTTAAATAAACTCTTTTTTTTATTTAAGTCCTAAGGCCCAAATACGTAATATAGTTTCTACGGAATATCTAGTAGCTTTTTAAATGTATGTAATTTTTTTGTAGAAAATTATTTATATTAAAAATATTTTATAAATATGAATATTTAAAAAAACTCGAGCTTGCTAACTAGATTTTGAGCAGTGCCAAGGGTAGCTCGGGCTTGGCTCGTTATGATTTCGAGCCGAACACGAGTTCGAGTCGAGTTCGCTCGAGCCGAGCTTTGACAGAACTTTGACGAGCCGATCATCAAATAGTTCACGAGCAGGCTCGGCTCATTAACACCGCTAGTCCTGGTTATTCTCAATGTGCTTGTTTTATTCATTTTAGAGCTCTAAATGAATAAATAAGTAAGTAACAGAGTTCATTTCCCTATAAAAAAATAAGTAAAAGAGTGGAATGAAATTGACTATGAACATCCTGGATTTAAGAAGCAACTTATAAAAATGTAAAATTTAATTATATTCCCTCCGTATTTAATTAAAAGATACACTTTCAATAATTGGTTGTATTTATTTAAAAGATACACTTTCTATTTTTGGCTTGTCATTGTTCCCACTTTCAATTTTATTAATCGATATTTCTCTCTCTTGTGGTCCCCACACTTACTCACAATCTCTTTTTAATATAATAAATAATTCACTCATTATAAATTCTTATAATAAGTAATAACCTAATACCAAACTTTCATCTTATTTTAATAAATTCAATCCACCCTCCTAAAACTACATGCAGGTCAAACTATATATTTTAGTTAAATACGGAGGAAGTAACAAGGAGTTAATAAAATTAAATAAGTTTCAAGTAATTACTACTCCATACTTCGTAATCCTAACACTTATCCTAACACTTATAAAAGCAAGGAGTTGATATTACTATTCCCACAATAGTGAAGTTACAAAATTACCCCCATTTTCCTTCCTTCTTTTTTTTGTCTTTTACCTTACAGACAGTGTATTTACCTAATTACCCTCTCCTGTTATACGCTGCTGCGTGTCCCTTTCACCCTACAACCAAGATCTCCTCCCTAATCCTCCTTAACCTGCTGCTTTCCCCCGTTGTTACTTTCTCCTACTCAAAGTGAGAATGATGAGTTTCTTCTCATCTCATCAATGTTATATGCCAATATCTCTTGGTTTCTATCATTGTTTTCTTCAGGTTAGGGTTAGATTTAAGGATCGTATTTTCATCGTTGTCGACTTCAACGATTAAGACTATGCTAACATCTTTCCTCTCTTGAATAATTTGGTAATCTCCGCCTCTACACTCAATTGCAGATTAATCTAGGGTTTTCTTCGTTTAAATGCCGACTCACTTGGTGTATCATTTTCTTAAAATTCGATTAATTTAGAGTTTTTACTTCTCCCAAATTCATTTAGTTATGTATATATATCTTGAAATTCGGTTCATTTGGGTTAATGTTATTGTTCATTGATCAATTTTGGTTGGCGGTTGTGTGTTTTGATGTCGTATTTTGGTTCTTTCAGTTGCTAAACTGAATATTATTGCTATATTTGTTTAAATTCGAATAATTCAGGGTTTTCTTCTCTCTCAACTCATTTTTTAATGTATATATTTCTTGAAATTTAATTCATTAAGGTTAATGTCATTGTCCATTGATCAATTTTGGTTGGGGTTGTGCGTTGATGTCGTGTTTTCGTTCTCTCAGTTGCTAAACCGAGTATAATTGCTATAAATTGGAGAGTTTTTCATTCCTATAATTTTCATTCATATACTTTGAATGTTTATTTTCTTCCCACAATTGGTTTGATAACTTGTCTCAACTAAGCTTGGTTGAACGAGTTGTGATGGAGGCTAAACTTGTATGCTTAGATCGAACCAGTTTGGTATTCAACTTTTTCGGAGCTCGTACCTTTCCCACATTCCTGCTTGTTGAAAACTAATTTCCGGCCTTTGAGTTTTTCATCAGGTACTTTTACTCACATTTTTTAACTCTATTAATCTCATCTTTAGTCTTTGTGTACCATTTCTTACTTCTTTGGGATGACAAGTTGTTATTTTTAGAGCTGTAATTGTTTTGTGTTGTGATCTTTAATTATAGAAGTATGCTTGCAAACTTTCGGTTCATGTATGTATGATGCGAAAGCTAGTTCCCTTTCCCGCAGCTGTTTAATCTTTGTTGGAATTGTTGCTTTCGCTATGAATCACGAAGAGTATTGTTTTTACTATTGTAACAAAAGTTAATGGTATAAGGGTATGCATGATGTTTTTAAAAGGCTTGCTAATACAAGCTATATTACATGGATACTTGGCCTTCTAACATAGGTATATTCATTTGGAGGCTTGAGACAAAAGATTCTATTATTTCCTAAAATAGCCAAGTCCGACACCCGTACGAAGTGACATATACCCTGTATTTATTTACGATGGTAGGGGAGTCCATGTACAATACTTACTAATAGAGACTTTTAGTTTGTGTTGATCAAAGCCTCAAAAGGTTCTAACACAGTCACATATACCGTTGATCTTCCTGTTATACCTCTCAATCCCCCAAATACTATATTCAAATGTTTGAAAGAGGTTTTCACCCTTCTTTTTATAATAATGGTCTATGGCTAACTTTCCCAAATGACCCTACTTAAATTGAGTGCAGAGATTGTAGAGTGTGGGAATAACACAATTATTATACACGACAATTTAGTACATTGTGTCATATCCCTGAGCCTAATTGTGATGAGCTGAGACAATGCGTGCAGACAACGACTGTTTCTGGATGAAGGACTGGTAAACTAAATAATTTTTTTCCGTTTCATGTACCCAAACATACCATATAGCAGTTAGTGCTGGTGCAAACTGAAACTTTTCCTGATAATGTTCTCCTATTTTCTAATTTTGGTGATTAAATTTGTTTATTTTGGGTGTATTACTTTCGTGAAGTACTCTGTACTGTTATCTTAACTCACCTACTGGTTCGTTTGTGTTCTTGGGGTTTTACTTGAATTACGTGGTTCAATTGTGTGATGTTTTGACGTCATTCTTAGGATCAATGAGCAACGAGGTGAAATGTGTCTTGAAGTCTTAAAAATTATCCGAACTTTATGTATCCGAGGTTGATAATCTGAAATGTTATCCCCGCGTTGATTTTCCTTATATTTTTAGTGCGGTGAGCTATTTCTTCCTTTATTGATTTTCCCTTTTCATCCATATGCTTCCTTTTTTTATGTATTTGATTGTGGGGTAAGTGCTATCAAATCATCATTTTATCTGGGTTCTGCTAAATTTAATGTATTCATGCTATATTTGATTGTGGGTAGTGATTTTCAGTCGTTATGTAGTTATTTTATATGGGTCTCTAATTATGGTGATTTTCCAATCTCGATGGTTAAATTGTGGTTTTGGTATCCTTTGGATGTCGAAACAATACAATAGTGGCCACCAAATGGAAAATTCAATTCCACTTTTCTGGAGTGACAAAGTATGTTGGTTGTAAAGCTAGCATTAATGCATGGTGTTTTGTGCCTCAGTTCATACTCTTTGGATTGGAGACTTGCAGTATTGGATGGACGGGAATTATATTTGCAATTATTTTGCCCATACCGGCGAGGTATATCAAATATAATGTTTATAATTGTTTATTAAATCCTTGTGTTCGCTTCCATGTTACAGCTTAACTTTTAACAAGCTTAACTAATGCTCCTACAGCTTGCAGATTTCCATGTCAATATCGTTCGTAATATACAAACCATGCAGTCTGAGTGTTACAAATTTCTTGAGTTTACTACTCATGTTGCTGCTGAGAGGATTCTGCAGACTCTGAATAATACTTTGATGCCATGTTGAGTAAAACTACAAACTGGATTGGGCTTTCTATGGAACTGGTGAGAAAAGGGGAGAGGATGCTTCTGATTATACAATTTTTGTCAGAGATTTAGCTGCAGATGTTACTGATTGCACATTGCAAGAAACTTTTAGAGTTCGCTATCTGTCAGTTAAAGGTGCGAAGGTTGTCAATTTGTCATAGATAGGCAAACTGGTAGCGCTAAGGGTTATGGATTTGTTCGTTTGAGAGATGAATGGAATGATGTGTCCAGGGCGTGCAATGTGTATCGGAGCTGCTGCAAACAAGAAAAGTTTTGGTGGAACAGGTATGTGTTTCCAGTCAGAGTGTTAAACGTGACTTCAAATGACAGTGTTTTATTTTGTCCGTGTGCATGAACTTCTCTGGTTTTTTGAATTTGTACAGTACCTTCATTTTTTTTTTGTATGTTATTCATAACCTAAAGTTGGTTAGTTGGGAAGCATGGTGGTTGATTTCACTTTATGTTGGATATTTTTATTTGGGTCTCCTACATTCACTTGAAGATGAGCAGAAATTTAGTTCCACTGCTTTCCTTTCAGAATTTGGGAACAATTAATTGCAAACTGAAAATCTTATATAACTCCCATTGTCTCAAAGCAGGGCGCCAAGAGGCTCTATCATTTAGGGCCTGGGAAATGGTTACCTCCTTAGTATGTTGCCTTGTGTAGGTCAGTAATGTCACAGATATTTCATTTCCCGCAGCTTTCAGTGTTAAAATTTATTCTTCCATTCAGTTTCATATATTATAAAAAAATACAACGGTTAGTTTACTTCAATTTCATTTACGATTCAAGATGTCATTAACTTATTCATATTTCTTTCGCTTAATTAAGAATTTTCTTAATGATCCTTTTCCCTCTTTTATCATTTTCATATTCTTATTCTCCAAGTCCTAGCTTGTACTCTTTTTCTTCTTTCATAGTCAGATTTATCTTGTCTGCATTTGCTTCCTTTTTAAAAAAACATCTACATGAGAGTGTGTCATAATAAAGTTATGAACTTCTTAAAACACTCATTAGTTTAGTTGCTGAGTTTTATTGGTTCCTACATTATTATCATCCTCTGGGGTGTTTAACTAGGTATCAGTTCCAAGCAATACTGGAATTTATTTCTGTTCTCTAGAATTTTCTCAATGTATATATTTTGTCATCCTCTTGGCCTCTTGGGGTGCTTAACTACGTATGTAGTTCCAATCATACTGGACTTAACTACGCATTGCAAAGAACAGGCAAATGCCATCATCAAGGCTTCAATGGTCTAACAATTGCAATGCTCTTCTAGGTATATGTATAGATATACTGTAAGTAATTCGCATGACTTTGTGCGATTTTTCTAACTGAAATGGGGTTGATTTATTGCAATGGTCTAGGCCATCTCCTATGCATTAATGGGGTCAGTAGGTTCTAAATATCTTTTCGCAAGAGAGATCAAGCATATTTTTTACATTGACCTTCATGCACATTGTGAAAAATCGAATTATTTTATTGCTCTTATGTTGATGCATCCAAGTAAACTGACGCGTGTGTAATTATTTTTCTATAGAAAGATAACTGAAATGGATACATCAAGCAAGAGACAAAAGAAGGCAATGGATCAACTAATTTACAACATTGCATGTGGACACCTGTGGTCTTTCGGACGAGGGATATGAGGATACAAATTCTGCCATTGATGTTCAAGTGCTTAATTACCAGAATGTTTTAGAAGTTATTCACGTTTATTGATTTATACGAAACAGATGTTATTGTTGCATCTAGAGTTGATACTTATCAAGATGTATGAGTCCTATACAAATAAGTCGTTTTAACCTTTTAGGTTAGGTCAAGTTTTATCTCTAGGCTCTTGCTTGTTAGCATCGACTAATGGTTATCAACTCTTTGTAAAGGACTGACTAGAATGAAAACACCTATGGTAATTATAGCTGAATTATAATATATTTTTAAAATAATAT

mRNA sequence

ATGTGCACGCGCGGCTCGGCCCAGCAGCGCTGGCACGCGACCCATTGCAAGGGCACTGCCAGCTGCTGGCCTTGCCTTGCTCGCTGGGCCTGGCCTTGCTTCATGCTCGGATGGGCCTGCTTGCTTGGAGGGATGCGCTGCTGTTGCTGCTCGCTTGCACGGGCTTTGCTAGGCGCGGGCCTGGCTTCGTGCTGGGCCCTTGCGTCTAGCAAGCTCGTCCGATGTTTATTTCACTATGCTAACATCTTTCCTCTCTTGAATAATTTGATCGAACCAGTTTGGTATTCAACTTTTTCGGAGCTCGTACCTTTCCCACATTCCTGCTTGTTGAAAACTAATTTCCGGCCTTTGAGTTTTTCATCAGTTCATACTCTTTGGATTGGAGACTTGCAGTATTGGATGGACGGGAATTATATTTGCAATTATTTTGCCCATACCGGCGAGCTTGCAGATTTCCATGTCAATATCGTTCGTAATATACAAACCATGCAGTCTGAGTGTTACAAATTTCTTGAGTTTACTACTCATGTTGCTGCTGAGAGGATTCTGCAGACTCTGAATAATACTTTGATGCCATCTGCAGATGTTACTGATTGCACATTGCAAGAAACTTTTAGAGTTCGCTATCTGTCAGTTAAAGGGCGTGCAATGTGTATCGGAGCTGCTGCAAACAAGAAAAGTTTTGGTGGAACAGAAAGATAACTGAAATGGATACATCAAGCAAGAGACAAAAGAAGGCAATGGATCAACTAATTTACAACATTGCATGTGGACACCTGTGGTCTTTCGGACGAGGGATATGAGGATACAAATTCTGCCATTGATGTTCAAGTGCTTAATTACCAGAATGTTTTAGAAGTTATTCACGTTTATTGATTTATACGAAACAGATGTTATTGTTGCATCTAGAGTTGATACTTATCAAGATGTATGAGTCCTATACAAATAAGTCGTTTTAACCTTTTAGGTTAGGTCAAGTTTTATCTCTAGGCTCTTGCTTGTTAGCATCGACTAATGGTTATCAACTCTTTGTAAAGGACTGACTAGAATGAAAACACCTATGGTAATTATAGCTGAATTATAATATATTTTTAAAATAATAT

Coding sequence (CDS)

ATGTGCACGCGCGGCTCGGCCCAGCAGCGCTGGCACGCGACCCATTGCAAGGGCACTGCCAGCTGCTGGCCTTGCCTTGCTCGCTGGGCCTGGCCTTGCTTCATGCTCGGATGGGCCTGCTTGCTTGGAGGGATGCGCTGCTGTTGCTGCTCGCTTGCACGGGCTTTGCTAGGCGCGGGCCTGGCTTCGTGCTGGGCCCTTGCGTCTAGCAAGCTCGTCCGATGTTTATTTCACTATGCTAACATCTTTCCTCTCTTGAATAATTTGATCGAACCAGTTTGGTATTCAACTTTTTCGGAGCTCGTACCTTTCCCACATTCCTGCTTGTTGAAAACTAATTTCCGGCCTTTGAGTTTTTCATCAGTTCATACTCTTTGGATTGGAGACTTGCAGTATTGGATGGACGGGAATTATATTTGCAATTATTTTGCCCATACCGGCGAGCTTGCAGATTTCCATGTCAATATCGTTCGTAATATACAAACCATGCAGTCTGAGTGTTACAAATTTCTTGAGTTTACTACTCATGTTGCTGCTGAGAGGATTCTGCAGACTCTGAATAATACTTTGATGCCATCTGCAGATGTTACTGATTGCACATTGCAAGAAACTTTTAGAGTTCGCTATCTGTCAGTTAAAGGGCGTGCAATGTGTATCGGAGCTGCTGCAAACAAGAAAAGTTTTGGTGGAACAGAAAGATAA

Protein sequence

MCTRGSAQQRWHATHCKGTASCWPCLARWAWPCFMLGWACLLGGMRCCCCSLARALLGAGLASCWALASSKLVRCLFHYANIFPLLNNLIEPVWYSTFSELVPFPHSCLLKTNFRPLSFSSVHTLWIGDLQYWMDGNYICNYFAHTGELADFHVNIVRNIQTMQSECYKFLEFTTHVAAERILQTLNNTLMPSADVTDCTLQETFRVRYLSVKGRAMCIGAAANKKSFGGTER
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo08275Spo08275gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo08275.1Spo08275.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo08275.1.CDS.8Spo08275.1.CDS.8CDS
Spo08275.1.CDS.7Spo08275.1.CDS.7CDS
Spo08275.1.CDS.6Spo08275.1.CDS.6CDS
Spo08275.1.CDS.5Spo08275.1.CDS.5CDS
Spo08275.1.CDS.4Spo08275.1.CDS.4CDS
Spo08275.1.CDS.3Spo08275.1.CDS.3CDS
Spo08275.1.CDS.2Spo08275.1.CDS.2CDS
Spo08275.1.CDS.1Spo08275.1.CDS.1CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo08275.1.utr3p.1Spo08275.1.utr3p.1three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo08275.1.exon.8Spo08275.1.exon.8exon
Spo08275.1.exon.7Spo08275.1.exon.7exon
Spo08275.1.exon.6Spo08275.1.exon.6exon
Spo08275.1.exon.5Spo08275.1.exon.5exon
Spo08275.1.exon.4Spo08275.1.exon.4exon
Spo08275.1.exon.3Spo08275.1.exon.3exon
Spo08275.1.exon.2Spo08275.1.exon.2exon
Spo08275.1.exon.1Spo08275.1.exon.1exon


Homology
[Close]
BLAST of Spo08275.1 vs. NCBI nr
Match: gi|902184772|gb|KNA10364.1| (hypothetical protein SOVF_145010 isoform A [Spinacia oleracea])

HSP 1 Score: 136.3 bits (342), Expect = 6.600e-29
Identity = 89/189 (47.09%), Postives = 95/189 (50.26%), Query Frame = 1 

		  

Query: 116 PLSFSSVHTLWIGDLQYWMDGNYICNYFAHTGELADFHVNIVRNIQTMQSECYKFLEFTT 175
           P +   V TLWIGDLQYWMD NYI N FA TGEL++  V I+RN QTMQSECY FLEFTT
Sbjct: 77  PATAEEVRTLWIGDLQYWMDENYIRNCFAPTGELSN--VKIIRNKQTMQSECYGFLEFTT 136

Query: 176 HVAAERILQTLNNTLMPSADV---------------------------------TDCTLQ 232
           H AAERILQTLNNTLMP+ +                                  TD TLQ
Sbjct: 137 HAAAERILQTLNNTLMPNVEQNYRLNWAFYGTGEKRGEDASDYTIFVGDLAADVTDYTLQ 196
[Close]
BLAST of Spo08275.1 vs. NCBI nr
Match: gi|902228160|gb|KNA21001.1| (hypothetical protein SOVF_047040 isoform A [Spinacia oleracea])

HSP 1 Score: 126.7 bits (317), Expect = 5.200e-26
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 1 

		  

Query: 134 MDGNYICNYFAHTGELADFHVNIVRNIQTMQSECYKFLEFTTHVAAERILQTLNNTLMP 193
           MDGNYICNYFAHTGELADFHVNIVRNIQTMQSECYKFLEFTTHVAAERILQTLNNTLMP
Sbjct: 1   MDGNYICNYFAHTGELADFHVNIVRNIQTMQSECYKFLEFTTHVAAERILQTLNNTLMP 59
[Close]
BLAST of Spo08275.1 vs. NCBI nr
Match: gi|731369905|ref|XP_010665562.1| (PREDICTED: polyadenylate-binding protein RBP45-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 120.9 bits (302), Expect = 2.900e-24
Identity = 81/189 (42.86%), Postives = 91/189 (48.15%), Query Frame = 1 

		  

Query: 116 PLSFSSVHTLWIGDLQYWMDGNYICNYFAHTGELADFHVNIVRNIQTMQSECYKFLEFTT 175
           P +   + TLWIGDLQYWMD NYI   FA +GEL +  V I+RN QTMQSECY F+EF+T
Sbjct: 75  PANADEIRTLWIGDLQYWMDENYIRTCFAQSGELVN--VKIIRNKQTMQSECYGFIEFST 134

Query: 176 HVAAERILQTLNNTLMPSA-------------------DVTDCTLQ-------------- 232
           H AAERILQT NNTLMP+                    D +D T+               
Sbjct: 135 HAAAERILQTYNNTLMPNVEQNYRLNWAFYGSGEKRGEDASDYTIFVGDLAPDVTDYTLQ 194
[Close]
BLAST of Spo08275.1 vs. NCBI nr
Match: gi|1012004966|ref|XP_015941275.1| (PREDICTED: polyadenylate-binding protein RBP45 [Arachis duranensis])

HSP 1 Score: 116.7 bits (291), Expect = 5.400e-23
Identity = 69/149 (46.31%), Postives = 81/149 (54.36%), Query Frame = 1 

		  

Query: 115 RPLSFSSVHTLWIGDLQYWMDGNYICNYFAHTGELADFHVNIVRNIQTMQSECYKFLEFT 174
           +P S   V TLWIGDLQYWMD NY+   FAHTGE+A   V ++RN QT QSE Y F+EFT
Sbjct: 59  QPASADEVRTLWIGDLQYWMDENYLYTCFAHTGEMAS--VKVIRNKQTSQSEGYGFIEFT 118

Query: 175 THVAAERILQTLNNTLMPS---------------------------------ADVTDCTL 230
           +  AAERILQT N T+MP+                                 ADVTD  L
Sbjct: 119 SRAAAERILQTFNGTIMPNGGQNFRLNWATFSAGERRHDDSPDYTIFVGDLAADVTDYHL 178
[Close]
BLAST of Spo08275.1 vs. NCBI nr
Match: gi|1021472393|ref|XP_016196180.1| (PREDICTED: polyadenylate-binding protein RBP45 [Arachis ipaensis])

HSP 1 Score: 116.7 bits (291), Expect = 5.400e-23
Identity = 69/149 (46.31%), Postives = 81/149 (54.36%), Query Frame = 1 

		  

Query: 115 RPLSFSSVHTLWIGDLQYWMDGNYICNYFAHTGELADFHVNIVRNIQTMQSECYKFLEFT 174
           +P S   V TLWIGDLQYWMD NY+   FAHTGE+A   V ++RN QT QSE Y F+EFT
Sbjct: 59  QPASADEVRTLWIGDLQYWMDENYLYTCFAHTGEMAS--VKVIRNKQTSQSEGYGFIEFT 118

Query: 175 THVAAERILQTLNNTLMPS---------------------------------ADVTDCTL 230
           +  AAERILQT N T+MP+                                 ADVTD  L
Sbjct: 119 SRAAAERILQTFNGTIMPNGGQNFRLNWATFSAGERRHDDSPDYTIFVGDLAADVTDYHL 178
[Close]
BLAST of Spo08275.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QSW8_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_145010 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 4.600e-29
Identity = 89/189 (47.09%), Postives = 95/189 (50.26%), Query Frame = 1 

		  

Query: 116 PLSFSSVHTLWIGDLQYWMDGNYICNYFAHTGELADFHVNIVRNIQTMQSECYKFLEFTT 175
           P +   V TLWIGDLQYWMD NYI N FA TGEL++  V I+RN QTMQSECY FLEFTT
Sbjct: 77  PATAEEVRTLWIGDLQYWMDENYIRNCFAPTGELSN--VKIIRNKQTMQSECYGFLEFTT 136

Query: 176 HVAAERILQTLNNTLMPSADV---------------------------------TDCTLQ 232
           H AAERILQTLNNTLMP+ +                                  TD TLQ
Sbjct: 137 HAAAERILQTLNNTLMPNVEQNYRLNWAFYGTGEKRGEDASDYTIFVGDLAADVTDYTLQ 196
[Close]
BLAST of Spo08275.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RN99_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_047040 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 3.700e-26
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 1 

		  

Query: 134 MDGNYICNYFAHTGELADFHVNIVRNIQTMQSECYKFLEFTTHVAAERILQTLNNTLMP 193
           MDGNYICNYFAHTGELADFHVNIVRNIQTMQSECYKFLEFTTHVAAERILQTLNNTLMP
Sbjct: 1   MDGNYICNYFAHTGELADFHVNIVRNIQTMQSECYKFLEFTTHVAAERILQTLNNTLMP 59
[Close]
BLAST of Spo08275.1 vs. UniProtKB/TrEMBL
Match: A0A0J8E0W4_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_8g200490 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 2.000e-24
Identity = 81/189 (42.86%), Postives = 91/189 (48.15%), Query Frame = 1 

		  

Query: 116 PLSFSSVHTLWIGDLQYWMDGNYICNYFAHTGELADFHVNIVRNIQTMQSECYKFLEFTT 175
           P +   + TLWIGDLQYWMD NYI   FA +GEL +  V I+RN QTMQSECY F+EF+T
Sbjct: 75  PANADEIRTLWIGDLQYWMDENYIRTCFAQSGELVN--VKIIRNKQTMQSECYGFIEFST 134

Query: 176 HVAAERILQTLNNTLMPSA-------------------DVTDCTLQ-------------- 232
           H AAERILQT NNTLMP+                    D +D T+               
Sbjct: 135 HAAAERILQTYNNTLMPNVEQNYRLNWAFYGSGEKRGEDASDYTIFVGDLAPDVTDYTLQ 194
[Close]
BLAST of Spo08275.1 vs. UniProtKB/TrEMBL
Match: A0A0L9TTR8_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan01g337300 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 4.900e-23
Identity = 69/149 (46.31%), Postives = 80/149 (53.69%), Query Frame = 1 

		  

Query: 115 RPLSFSSVHTLWIGDLQYWMDGNYICNYFAHTGELADFHVNIVRNIQTMQSECYKFLEFT 174
           +P S   V TLWIGDLQYWMD NYI   FAHTGE+A   V ++RN QT QSE Y F+EFT
Sbjct: 54  QPTSADEVRTLWIGDLQYWMDENYIYTCFAHTGEVAS--VKVIRNKQTSQSEGYGFIEFT 113

Query: 175 THVAAERILQTLNNTLMPS---------------------------------ADVTDCTL 230
           +   AERILQT N T+MP+                                 ADVTD  L
Sbjct: 114 SRAGAERILQTYNGTIMPNGGQNFRLNWASFSAGDRRHDDSPDHTIFVGDLAADVTDYLL 173
[Close]
BLAST of Spo08275.1 vs. UniProtKB/TrEMBL
Match: A0A0S3RA38_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.01G549900 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 4.900e-23
Identity = 69/149 (46.31%), Postives = 80/149 (53.69%), Query Frame = 1 

		  

Query: 115 RPLSFSSVHTLWIGDLQYWMDGNYICNYFAHTGELADFHVNIVRNIQTMQSECYKFLEFT 174
           +P S   V TLWIGDLQYWMD NYI   FAHTGE+A   V ++RN QT QSE Y F+EFT
Sbjct: 54  QPTSADEVRTLWIGDLQYWMDENYIYTCFAHTGEVAS--VKVIRNKQTSQSEGYGFIEFT 113

Query: 175 THVAAERILQTLNNTLMPS---------------------------------ADVTDCTL 230
           +   AERILQT N T+MP+                                 ADVTD  L
Sbjct: 114 SRAGAERILQTYNGTIMPNGGQNFRLNWASFSAGDRRHDDSPDHTIFVGDLAADVTDYLL 173
[Close]
BLAST of Spo08275.1 vs. ExPASy Swiss-Prot
Match: RB45B_ARATH (Polyadenylate-binding protein RBP45B OS=Arabidopsis thaliana GN=RBP45B PE=1 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.100e-20
Identity = 59/149 (39.60%), Postives = 75/149 (50.34%), Query Frame = 1 

		  

Query: 115 RPLSFSSVHTLWIGDLQYWMDGNYICNYFAHTGELADFHVNIVRNIQTMQSECYKFLEFT 174
           +P +   + TLWIGDLQYWMD N++   FAHTGE+      ++RN QT Q E Y F+EF 
Sbjct: 54  QPTTADEIRTLWIGDLQYWMDENFLYGCFAHTGEMVS--AKVIRNKQTGQVEGYGFIEFA 113

Query: 175 THVAAERILQTLNNTLMP---------------------------------SADVTDCTL 230
           +H AAER+LQT NN  +P                                 +ADVTD  L
Sbjct: 114 SHAAAERVLQTFNNAPIPSFPDQLFRLNWASLSSGDKRDDSPDYTIFVGDLAADVTDYIL 173
[Close]
BLAST of Spo08275.1 vs. ExPASy Swiss-Prot
Match: R47BP_ARATH (Polyadenylate-binding protein RBP47B' OS=Arabidopsis thaliana GN=RBP47B' PE=2 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.300e-19
Identity = 57/131 (43.51%), Postives = 67/131 (51.15%), Query Frame = 1 

		  

Query: 116 PLSFSSVHTLWIGDLQYWMDGNYICNYFAHTGELADFHVNIVRNIQTMQSECYKFLEFTT 175
           P +   V TLWIGDLQYW+D NY+ + F+ TGEL    V ++RN  T Q E Y F+EF +
Sbjct: 17  PQTLEEVRTLWIGDLQYWVDENYLTSCFSQTGELVS--VKVIRNKITGQPEGYGFIEFIS 76

Query: 176 HVAAERILQTLNNTLMPSA--------------------------------DVTDCTLQE 215
           H AAER LQT N T MP                                  DVTD  LQE
Sbjct: 77  HAAAERTLQTYNGTQMPGTELTFRLNWASFGSGQKVDAGPDHSIFVGDLAPDVTDYLLQE 136
[Close]
BLAST of Spo08275.1 vs. ExPASy Swiss-Prot
Match: RBP45_NICPL (Polyadenylate-binding protein RBP45 OS=Nicotiana plumbaginifolia GN=RBP45 PE=1 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.100e-18
Identity = 48/93 (51.61%), Postives = 61/93 (65.59%), Query Frame = 1 

		  

Query: 120 SSVHTLWIGDLQYWMDGNYICNYFAHTGELADFHVNIVRNIQTMQSECYKFLEFTTHVAA 179
           + V +LWIGDLQYWMD NY+   F HTGEL      ++RN QT QSE Y FLEF +H AA
Sbjct: 81  NEVRSLWIGDLQYWMDENYLSTCFYHTGELVS--AKVIRNKQTGQSEGYGFLEFRSHAAA 140

Query: 180 ERILQTLNNTLMPSADVTDCTLQETFRVRYLSV 213
           E ILQT N TLMP+       +++ FR+ + S+
Sbjct: 141 ETILQTYNGTLMPN-------VEQNFRMNWASL 164
[Close]
BLAST of Spo08275.1 vs. ExPASy Swiss-Prot
Match: RBP47_NICPL (Polyadenylate-binding protein RBP47 OS=Nicotiana plumbaginifolia GN=RBP47 PE=1 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 3.400e-17
Identity = 53/140 (37.86%), Postives = 74/140 (52.86%), Query Frame = 1 

		  

Query: 124 TLWIGDLQYWMDGNYICNYFAHTGELADFHVNIVRNIQTMQSECYKFLEFTTHVAAERIL 183
           T+WIGDLQ WMD +Y+ + F+  GE+    V I+RN QT QSE Y F+EF TH AAE++L
Sbjct: 85  TIWIGDLQQWMDESYLHSCFSQAGEVIS--VKIIRNKQTGQSERYGFVEFNTHAAAEKVL 144

Query: 184 QTLNNTLMPS---------------------------------ADVTDCTLQETFRVRYL 230
           Q+ N T+MP+                                 +DVTD  L++TF  RY 
Sbjct: 145 QSYNGTMMPNTEQPFRLNWAGFSTGEKRAETGSDFSIFVGDLASDVTDTMLRDTFASRYP 204
[Close]
BLAST of Spo08275.1 vs. ExPASy Swiss-Prot
Match: RB45A_ARATH (Polyadenylate-binding protein RBP45A OS=Arabidopsis thaliana GN=RBP45A PE=2 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.400e-15
Identity = 43/82 (52.44%), Postives = 52/82 (63.41%), Query Frame = 1 

		  

Query: 116 PLSFSSVHTLWIGDLQYWMDGNYICNYFAHTGELADFHVNIVRNIQTMQSECYKFLEFTT 175
           P S S V +LWIGDLQ WMD NYI + FA +GE       ++RN  T QSE Y F+EF +
Sbjct: 53  PGSASDVKSLWIGDLQQWMDENYIMSVFAQSGEATS--AKVIRNKLTGQSEGYGFIEFVS 112

Query: 176 HVAAERILQTLNNTLMPSADVT 198
           H  AER+LQT N   MPS + T
Sbjct: 113 HSVAERVLQTYNGAPMPSTEQT 132
[Close]
BLAST of Spo08275.1 vs. TAIR (Arabidopsis)
Match: AT1G11650.2 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 101.7 bits (252), Expect = 6.400e-22
Identity = 59/149 (39.60%), Postives = 75/149 (50.34%), Query Frame = 1 

		  

Query: 115 RPLSFSSVHTLWIGDLQYWMDGNYICNYFAHTGELADFHVNIVRNIQTMQSECYKFLEFT 174
           +P +   + TLWIGDLQYWMD N++   FAHTGE+      ++RN QT Q E Y F+EF 
Sbjct: 54  QPTTADEIRTLWIGDLQYWMDENFLYGCFAHTGEMVS--AKVIRNKQTGQVEGYGFIEFA 113

Query: 175 THVAAERILQTLNNTLMP---------------------------------SADVTDCTL 230
           +H AAER+LQT NN  +P                                 +ADVTD  L
Sbjct: 114 SHAAAERVLQTFNNAPIPSFPDQLFRLNWASLSSGDKRDDSPDYTIFVGDLAADVTDYIL 173
[Close]
BLAST of Spo08275.1 vs. TAIR (Arabidopsis)
Match: AT5G19350.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 98.2 bits (243), Expect = 7.100e-21
Identity = 57/131 (43.51%), Postives = 67/131 (51.15%), Query Frame = 1 

		  

Query: 116 PLSFSSVHTLWIGDLQYWMDGNYICNYFAHTGELADFHVNIVRNIQTMQSECYKFLEFTT 175
           P +   V TLWIGDLQYW+D NY+ + F+ TGEL    V ++RN  T Q E Y F+EF +
Sbjct: 17  PQTLEEVRTLWIGDLQYWVDENYLTSCFSQTGELVS--VKVIRNKITGQPEGYGFIEFIS 76

Query: 176 HVAAERILQTLNNTLMPSA--------------------------------DVTDCTLQE 215
           H AAER LQT N T MP                                  DVTD  LQE
Sbjct: 77  HAAAERTLQTYNGTQMPGTELTFRLNWASFGSGQKVDAGPDHSIFVGDLAPDVTDYLLQE 136
[Close]
BLAST of Spo08275.1 vs. TAIR (Arabidopsis)
Match: AT5G54900.1 (RNA-binding protein 45A)

HSP 1 Score: 84.7 bits (208), Expect = 8.100e-17
Identity = 43/82 (52.44%), Postives = 52/82 (63.41%), Query Frame = 1 

		  

Query: 116 PLSFSSVHTLWIGDLQYWMDGNYICNYFAHTGELADFHVNIVRNIQTMQSECYKFLEFTT 175
           P S S V +LWIGDLQ WMD NYI + FA +GE       ++RN  T QSE Y F+EF +
Sbjct: 53  PGSASDVKSLWIGDLQQWMDENYIMSVFAQSGEATS--AKVIRNKLTGQSEGYGFIEFVS 112

Query: 176 HVAAERILQTLNNTLMPSADVT 198
           H  AER+LQT N   MPS + T
Sbjct: 113 HSVAERVLQTYNGAPMPSTEQT 132
[Close]
BLAST of Spo08275.1 vs. TAIR (Arabidopsis)
Match: AT3G19130.1 (RNA-binding protein 47B)

HSP 1 Score: 79.3 bits (194), Expect = 3.400e-15
Identity = 39/94 (41.49%), Postives = 59/94 (62.77%), Query Frame = 1 

		  

Query: 118 SFSSVHTLWIGDLQYWMDGNYICNYFAHTGELADFHVNIVRNIQTMQSECYKFLEFTTHV 177
           S   V TLW+GDL +WMD  Y+ + F+HTGE++   V ++RN  T QSE Y F+EF +  
Sbjct: 103 SGDDVKTLWVGDLLHWMDETYLHSCFSHTGEVSS--VKVIRNKLTSQSEGYGFVEFLSRA 162

Query: 178 AAERILQTLNNTLMPSADVTDCTLQETFRVRYLS 212
           AAE +LQ  + ++MP++D       + FR+ + S
Sbjct: 163 AAEEVLQNYSGSVMPNSD-------QPFRINWAS 187
[Close]
BLAST of Spo08275.1 vs. TAIR (Arabidopsis)
Match: AT4G27000.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 77.0 bits (188), Expect = 1.700e-14
Identity = 39/80 (48.75%), Postives = 47/80 (58.75%), Query Frame = 1 

		  

Query: 116 PLSFSSVHTLWIGDLQYWMDGNYICNYFAHTGELADFHVNIVRNIQTMQSECYKFLEFTT 175
           P S   + +LWIGDLQ WMD NY+ N F  TGE       ++RN Q   SE Y F+EF  
Sbjct: 73  PGSAGEIRSLWIGDLQPWMDENYLMNVFGLTGEAT--AAKVIRNKQNGYSEGYGFIEFVN 132

Query: 176 HVAAERILQTLNNTLMPSAD 196
           H  AER LQT N   MPS++
Sbjct: 133 HATAERNLQTYNGAPMPSSE 150
The following BLAST results are available for this feature:
BLAST of Spo08275.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902184772|gb|KNA10364.1|6.6e-2947.0hypothetical protein SOVF_1450... [more]
gi|902228160|gb|KNA21001.1|5.2e-26100.hypothetical protein SOVF_0470... [more]
gi|731369905|ref|XP_010665562.1|2.9e-2442.8PREDICTED: polyadenylate-bindi... [more]
gi|1012004966|ref|XP_015941275.1|5.4e-2346.3PREDICTED: polyadenylate-bindi... [more]
gi|1021472393|ref|XP_016196180.1|5.4e-2346.3PREDICTED: polyadenylate-bindi... [more]
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BLAST of Spo08275.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9QSW8_SPIOL4.6e-2947.0Uncharacterized protein OS=Spi... [more]
A0A0K9RN99_SPIOL3.7e-26100.Uncharacterized protein OS=Spi... [more]
A0A0J8E0W4_BETVU2.0e-2442.8Uncharacterized protein OS=Bet... [more]
A0A0L9TTR8_PHAAN4.9e-2346.3Uncharacterized protein OS=Pha... [more]
A0A0S3RA38_PHAAN4.9e-2346.3Uncharacterized protein OS=Vig... [more]
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BLAST of Spo08275.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RB45B_ARATH1.1e-2039.6Polyadenylate-binding protein ... [more]
R47BP_ARATH1.3e-1943.5Polyadenylate-binding protein ... [more]
RBP45_NICPL1.1e-1851.6Polyadenylate-binding protein ... [more]
RBP47_NICPL3.4e-1737.8Polyadenylate-binding protein ... [more]
RB45A_ARATH1.4e-1552.4Polyadenylate-binding protein ... [more]
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BLAST of Spo08275.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5
Match NameE-valueIdentityDescription
AT1G11650.26.4e-2239.6RNA-binding (RRM/RBD/RNP motif... [more]
AT5G19350.17.1e-2143.5RNA-binding (RRM/RBD/RNP motif... [more]
AT5G54900.18.1e-1752.4RNA-binding protein 45A[more]
AT3G19130.13.4e-1541.4RNA-binding protein 47B[more]
AT4G27000.11.7e-1448.7RNA-binding (RRM/RBD/RNP motif... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 125..192
score: 6.
IPR000504RNA recognition motif domainPROFILEPS50102RRMcoord: 123..224
score: 8
IPR012677Nucleotide-binding alpha-beta plait domainGENE3D3.30.70.330coord: 123..191
score: 3.
IPR012677Nucleotide-binding alpha-beta plait domainunknownSSF54928RNA-binding domain, RBDcoord: 108..191
score: 6.11

GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0000166 nucleotide binding